Wall clock time and date at job start Wed Apr 1 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46896 * 111.00292 * 2 1 4 4 C 1.46909 * 110.99835 * 123.95040 * 2 1 3 5 5 C 1.52999 * 109.46816 * 66.04399 * 4 2 1 6 6 N 1.46504 * 109.46758 * 180.02562 * 5 4 2 7 7 C 1.34971 * 125.97381 * 125.01988 * 6 5 4 8 8 C 1.35237 * 107.85734 * 179.71432 * 7 6 5 9 9 C 1.40403 * 107.86903 * 0.39633 * 8 7 6 10 10 N 1.40187 * 125.97567 * 179.86739 * 9 8 7 11 11 C 1.34774 * 119.99816 * 359.70876 * 10 9 8 12 12 O 1.21603 * 119.99982 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00029 * 179.97438 * 11 10 9 14 14 C 1.40191 * 119.99918 * 179.97438 * 13 11 10 15 15 C 1.40395 * 125.97261 * 0.02562 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.71403 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.97121 * 179.97438 * 14 13 11 28 28 N 1.31209 * 108.05540 * 359.59758 * 9 8 7 29 29 H 1.08995 * 109.47654 * 296.05359 * 1 2 3 30 30 H 1.09004 * 109.47120 * 56.04784 * 1 2 3 31 31 H 1.09005 * 109.47349 * 176.04750 * 1 2 3 32 32 H 1.08997 * 109.47296 * 183.95154 * 3 2 1 33 33 H 1.09004 * 109.46772 * 303.95050 * 3 2 1 34 34 H 1.08997 * 109.47390 * 63.94685 * 3 2 1 35 35 H 1.09003 * 109.46883 * 306.04897 * 4 2 1 36 36 H 1.08993 * 109.47029 * 186.04602 * 4 2 1 37 37 H 1.09003 * 109.46988 * 60.00562 * 5 4 2 38 38 H 1.08993 * 109.47488 * 299.99923 * 5 4 2 39 39 H 1.08000 * 126.06748 * 359.96036 * 7 6 5 40 40 H 1.08002 * 126.06998 * 180.26516 * 8 7 6 41 41 H 0.96998 * 120.00364 * 179.71243 * 10 9 8 42 42 H 0.96998 * 120.00152 * 0.02562 * 13 11 10 43 43 H 1.07999 * 126.07114 * 359.97438 * 15 14 13 44 44 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 45 45 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 46 46 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 47 47 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9705 6 7 2.1558 -3.0063 2.1054 7 6 1.4387 -3.8080 2.9208 8 6 2.2853 -4.3335 3.8351 9 6 3.5687 -3.8272 3.5749 10 7 4.7329 -4.1233 4.2976 11 6 4.6766 -4.9601 5.3526 12 8 3.6160 -5.4586 5.6773 13 7 5.7959 -5.2452 6.0471 14 6 5.7372 -6.1152 7.1448 15 6 4.5857 -6.7570 7.6278 16 6 4.9462 -7.5116 8.6906 17 7 6.2722 -7.3493 8.8828 18 6 7.0739 -7.9841 9.9318 19 6 8.2230 -8.7300 9.3039 20 1 8.3442 -8.7307 8.2307 21 6 9.1196 -9.4115 10.0993 22 7 8.9750 -9.4062 11.4065 23 14 10.5443 -10.3354 9.3210 24 1 11.3604 -10.9740 10.3847 25 1 10.0165 -11.3805 8.4074 26 1 11.3887 -9.3863 8.5520 27 7 6.7490 -6.4728 7.8998 28 7 3.4892 -3.0330 2.5336 29 1 -0.3634 0.4513 0.9232 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0253 -0.0708 32 1 3.0827 1.3431 -0.0708 33 1 1.5898 1.9162 -0.8525 34 1 1.7043 1.8724 0.9232 35 1 1.5609 -0.3872 2.0629 36 1 3.0796 -0.6611 1.1757 37 1 2.0657 -2.6214 0.0453 38 1 0.5471 -2.3474 0.9325 39 1 0.3779 -3.9992 2.8524 40 1 2.0207 -5.0192 4.6265 41 1 5.5789 -3.7259 4.0384 42 1 6.6419 -4.8479 5.7879 43 1 3.5896 -6.6675 7.2202 44 1 4.2891 -8.1318 9.2824 45 1 6.4516 -8.6814 10.4929 46 1 7.4615 -7.2200 10.6055 47 1 8.2353 -8.9263 11.8107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186606098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:08 Heat of formation + Delta-G solvation = 135.824282 kcal Electronic energy + Delta-G solvation = -28644.544460 eV Core-core repulsion = 24480.339871 eV Total energy + Delta-G solvation = -4164.204589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.59167 -42.13468 -40.90338 -38.65662 -36.67007 -36.09633 -35.58302 -33.76023 -32.53277 -31.12133 -31.01083 -29.37427 -28.51139 -28.15474 -25.68046 -25.04041 -23.89090 -22.67157 -22.46384 -21.97477 -21.21996 -21.21288 -19.25814 -19.10368 -18.57545 -18.10401 -17.23958 -17.10763 -16.62391 -16.43520 -16.34549 -15.99170 -15.91495 -15.68398 -15.51586 -15.23653 -14.93467 -14.59376 -14.28044 -14.11002 -13.93216 -13.89778 -13.63382 -13.42136 -13.21530 -13.12748 -12.66082 -12.63902 -12.58990 -12.21393 -12.10611 -11.94592 -11.82867 -11.68672 -11.59811 -11.08243 -10.99834 -10.67889 -9.92066 -9.83065 -9.46677 -9.34731 -9.08579 -8.75371 -6.54088 0.64956 0.74111 1.03941 1.46421 1.51109 1.52673 1.58665 1.80131 1.92867 2.02563 2.40023 2.49802 2.86189 3.02930 3.06099 3.56484 3.83561 3.92717 3.97227 4.13165 4.16418 4.24131 4.32047 4.46182 4.52123 4.56231 4.62249 4.65391 4.68037 4.78572 4.81060 4.84685 4.86711 4.86887 4.94948 4.98205 5.04612 5.35083 5.50994 5.62164 5.74683 5.83794 5.89364 5.95461 5.97439 6.15173 6.29012 6.38400 6.43977 6.79897 7.02068 7.19951 7.21566 8.60268 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.001517 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.475898 B =18455.590739 C =18861.388015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.554 5.554 3 C 0.024 3.976 4 C 0.051 3.949 5 C 0.142 3.858 6 N -0.365 5.365 7 C 0.084 3.916 8 C -0.296 4.296 9 C 0.302 3.698 10 N -0.631 5.631 11 C 0.727 3.273 12 O -0.565 6.565 13 N -0.628 5.628 14 C 0.287 3.713 15 C -0.286 4.286 16 C 0.057 3.943 17 N -0.343 5.343 18 C 0.259 3.741 19 C -0.622 4.622 20 H 0.046 0.954 21 C -0.018 4.018 22 N -0.924 5.924 23 Si 1.119 2.881 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.276 1.276 27 N -0.345 5.345 28 N -0.343 5.343 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.220 0.780 40 H 0.159 0.841 41 H 0.426 0.574 42 H 0.424 0.576 43 H 0.174 0.826 44 H 0.203 0.797 45 H 0.055 0.945 46 H 0.017 0.983 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.797 18.601 -23.626 36.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.278 5.278 3 C -0.124 4.124 4 C -0.078 4.078 5 C 0.021 3.979 6 N -0.149 5.149 7 C -0.062 4.062 8 C -0.327 4.327 9 C 0.046 3.954 10 N -0.283 5.283 11 C 0.425 3.575 12 O -0.439 6.439 13 N -0.279 5.279 14 C 0.031 3.969 15 C -0.318 4.318 16 C -0.091 4.091 17 N -0.125 5.125 18 C 0.140 3.860 19 C -0.660 4.660 20 H 0.064 0.936 21 C -0.218 4.218 22 N -0.560 5.560 23 Si 0.940 3.060 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.201 1.201 27 N -0.176 5.176 28 N -0.173 5.173 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.147 0.853 39 H 0.236 0.764 40 H 0.176 0.824 41 H 0.264 0.736 42 H 0.262 0.738 43 H 0.191 0.809 44 H 0.220 0.780 45 H 0.073 0.927 46 H 0.035 0.965 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.372 17.907 -23.987 34.610 hybrid contribution -1.683 1.243 0.995 2.317 sum -19.055 19.151 -22.992 35.476 Atomic orbital electron populations 1.22606 0.85963 1.03565 1.01293 1.61946 1.09331 1.14726 1.41813 1.22420 1.00968 0.87878 1.01154 1.22216 1.00868 0.92821 0.91886 1.21876 1.00655 0.89728 0.85614 1.48358 1.03787 1.37171 1.25626 1.23150 1.00255 0.92495 0.90323 1.21912 0.91053 1.12033 1.07693 1.18954 0.87379 0.96499 0.92521 1.41193 1.10126 1.47804 1.29154 1.15281 0.83318 0.79479 0.79373 1.90790 1.28553 1.55252 1.69335 1.41144 1.11391 1.47085 1.28326 1.18971 0.93124 0.94456 0.90309 1.21734 1.00554 1.07286 1.02177 1.23194 0.85564 1.00882 0.99481 1.48553 1.06576 1.34066 1.23302 1.19423 0.91073 0.91620 0.83875 1.22307 1.13168 1.35281 0.95286 0.93604 1.27240 1.02942 0.96762 0.94818 1.70946 1.32279 1.41817 1.10920 0.82884 0.72717 0.75582 0.74795 1.20033 1.19660 1.20145 1.77274 1.21407 1.14434 1.04477 1.77238 0.98824 1.25741 1.15530 0.95417 0.90181 0.89715 0.91466 0.89813 0.95622 0.94900 0.91070 0.88759 0.85282 0.76390 0.82350 0.73618 0.73829 0.80878 0.78042 0.92705 0.96543 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.32 127.69 1.19 1.27 16 2 N -0.55 -5.48 5.02 -948.85 -4.76 -10.24 16 3 C 0.02 0.21 9.57 127.69 1.22 1.43 16 4 C 0.05 0.61 5.14 86.30 0.44 1.05 16 5 C 0.14 1.42 6.43 86.38 0.56 1.97 16 6 N -0.37 -6.15 3.68 -348.10 -1.28 -7.43 16 7 C 0.08 1.33 11.44 83.52 0.96 2.28 16 8 C -0.30 -7.04 9.61 22.10 0.21 -6.83 16 9 C 0.30 7.55 8.11 133.32 1.08 8.63 16 10 N -0.63 -14.61 5.45 -321.23 -1.75 -16.37 16 11 C 0.73 21.00 8.50 179.06 1.52 22.53 16 12 O -0.56 -19.02 10.60 -4.04 -0.04 -19.07 16 13 N -0.63 -18.81 5.45 -321.23 -1.75 -20.57 16 14 C 0.29 11.29 8.11 133.31 1.08 12.37 16 15 C -0.29 -10.92 9.60 22.10 0.21 -10.71 16 16 C 0.06 2.19 11.44 83.52 0.96 3.15 16 17 N -0.34 -16.00 3.67 -351.84 -1.29 -17.29 16 18 C 0.26 13.30 5.57 85.64 0.48 13.77 16 19 C -0.62 -35.40 9.24 25.60 0.24 -35.16 16 20 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 21 C -0.02 -1.00 5.46 84.65 0.46 -0.54 16 22 N -0.92 -53.95 13.65 21.45 0.29 -53.66 16 23 Si 1.12 49.76 29.90 68.60 2.05 51.82 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 27 N -0.35 -15.98 12.42 -54.44 -0.68 -16.66 16 28 N -0.34 -7.90 12.43 -54.44 -0.68 -8.57 16 29 H 0.03 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.08 0.35 8.12 -2.38 -0.02 0.33 16 31 H 0.08 0.23 6.47 -2.38 -0.02 0.22 16 32 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 33 H 0.08 0.53 8.12 -2.38 -0.02 0.51 16 34 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.03 0.44 8.12 -2.39 -0.02 0.42 16 36 H 0.07 1.13 8.06 -2.39 -0.02 1.11 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.13 0.46 6.48 -2.39 -0.02 0.44 16 39 H 0.22 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.16 4.33 5.91 -2.91 -0.02 4.32 16 41 H 0.43 7.27 8.84 -92.71 -0.82 6.45 16 42 H 0.42 10.09 8.84 -92.71 -0.82 9.27 16 43 H 0.17 6.27 5.91 -2.91 -0.02 6.26 16 44 H 0.20 6.08 8.06 -2.91 -0.02 6.05 16 45 H 0.06 2.69 7.94 -2.39 -0.02 2.67 16 46 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 47 H 0.26 15.06 7.22 -92.71 -0.67 14.39 16 Total: -1.00 -76.69 395.64 0.20 -76.48 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.52 Total: 26.33 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 10.61 Total: 15.22 kcal Atomic # 7 Polarization: -138.89 SS G_CDS: -11.90 Total: -150.78 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.04 Total: -19.07 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.82 kcal Total: -76.69 0.20 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186606098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.308 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds