Wall clock time and date at job start Wed Apr 1 2020 04:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34237 * 116.99443 * 90.00402 * 13 3 2 15 15 O 1.20822 * 120.00184 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99347 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.47331 * 299.99474 * 16 14 13 18 18 N 1.46504 * 109.47031 * 179.97438 * 16 14 13 19 19 C 1.34770 * 120.00451 * 154.99532 * 18 16 14 20 20 O 1.21553 * 119.99693 * 0.02562 * 19 18 16 21 21 C 1.47841 * 120.00316 * 179.97438 * 19 18 16 22 22 C 1.39578 * 120.14144 * 359.72402 * 21 19 18 23 23 C 1.37968 * 119.85075 * 179.78801 * 22 21 19 24 24 C 1.38356 * 120.14376 * 0.49031 * 23 22 21 25 25 C 1.50702 * 119.85270 * 179.76321 * 24 23 22 26 26 C 1.38361 * 120.29290 * 359.74120 * 24 23 22 27 27 C 1.37950 * 120.14670 * 0.02562 * 26 24 23 28 28 C 1.52994 * 109.47665 * 59.99756 * 16 14 13 29 29 C 1.52997 * 109.47638 * 179.97438 * 28 16 14 30 30 C 1.53006 * 109.47207 * 300.00008 * 28 16 14 31 31 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 33 33 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 34 34 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 35 35 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 36 36 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 37 37 H 0.97004 * 119.99511 * 335.00105 * 18 16 14 38 38 H 1.07992 * 120.07625 * 0.02562 * 22 21 19 39 39 H 1.08000 * 119.92591 * 180.23020 * 23 22 21 40 40 H 1.08995 * 109.46967 * 269.97629 * 25 24 23 41 41 H 1.09003 * 109.47129 * 29.98044 * 25 24 23 42 42 H 1.09001 * 109.46849 * 149.98149 * 25 24 23 43 43 H 1.08003 * 119.92917 * 179.97438 * 26 24 23 44 44 H 1.08004 * 120.07730 * 179.97438 * 27 26 24 45 45 H 1.08999 * 109.46976 * 59.99500 * 28 16 14 46 46 H 1.08999 * 109.47040 * 59.99913 * 29 28 16 47 47 H 1.08993 * 109.47676 * 179.97438 * 29 28 16 48 48 H 1.09003 * 109.47309 * 300.00188 * 29 28 16 49 49 H 1.09002 * 109.46940 * 59.99800 * 30 28 16 50 50 H 1.09000 * 109.47166 * 179.97438 * 30 28 16 51 51 H 1.08999 * 109.46738 * 299.99638 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 8 1.6560 2.0916 -1.2408 14 6 0.4728 2.7255 -1.2560 15 8 -0.2191 2.7371 -0.2656 16 6 0.0072 3.4216 -2.5088 17 1 0.7241 4.1958 -2.7822 18 7 -1.3034 4.0315 -2.2702 19 6 -1.6979 5.0900 -3.0051 20 8 -0.9666 5.5386 -3.8662 21 6 -3.0207 5.7051 -2.7647 22 6 -3.8656 5.1882 -1.7813 23 6 -5.0969 5.7696 -1.5590 24 6 -5.4989 6.8562 -2.3152 25 6 -6.8475 7.4828 -2.0705 26 6 -4.6681 7.3704 -3.2949 27 6 -3.4324 6.8015 -3.5240 28 6 -0.1037 2.4046 -3.6463 29 6 -0.5770 3.1112 -4.9181 30 6 1.2647 1.7671 -3.8957 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3632 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.8288 -0.0530 2.9544 37 1 -1.8871 3.6733 -1.5832 38 1 -3.5547 4.3376 -1.1931 39 1 -5.7502 5.3729 -0.7959 40 1 -7.5929 6.9987 -2.7014 41 1 -7.1215 7.3577 -1.0229 42 1 -6.8033 8.5452 -2.3102 43 1 -4.9880 8.2186 -3.8820 44 1 -2.7850 7.2035 -4.2893 45 1 -0.8206 1.6304 -3.3729 46 1 0.1397 3.8856 -5.1916 47 1 -0.6556 2.3868 -5.7286 48 1 -1.5520 3.5650 -4.7402 49 1 1.6015 1.2635 -2.9896 50 1 1.1857 1.0422 -4.7059 51 1 1.9817 2.5413 -4.1691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188085218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:13 Heat of formation + Delta-G solvation = -114.654387 kcal Electronic energy + Delta-G solvation = -31435.499322 eV Core-core repulsion = 27299.388004 eV Total energy + Delta-G solvation = -4136.111318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79932 -39.81120 -38.67587 -36.33831 -35.72922 -33.81321 -33.46911 -32.71626 -31.42414 -31.18611 -28.47867 -27.63662 -26.88260 -26.32343 -23.35577 -22.93091 -22.63944 -21.43790 -20.54162 -20.07343 -19.62808 -18.42425 -16.95645 -16.78404 -16.20370 -15.93492 -15.68224 -15.40754 -15.17342 -15.02334 -14.82313 -14.50869 -14.09405 -13.86926 -13.66310 -13.36223 -13.17888 -12.88453 -12.59766 -12.55761 -12.47867 -12.28921 -12.15714 -11.95593 -11.79626 -11.57611 -11.49375 -11.30702 -11.26796 -11.21181 -11.01628 -10.82263 -10.69125 -10.49246 -10.24161 -9.97840 -9.87991 -9.72320 -9.38522 -9.26275 -9.12916 -8.91446 -8.88170 -8.48656 -6.22229 -4.29425 0.60842 1.11210 2.68685 2.78607 2.85927 3.24543 3.28442 3.31083 3.61557 3.69968 4.29758 4.42313 4.48650 4.62599 4.74086 4.87088 4.95229 5.05900 5.09237 5.10180 5.21850 5.30475 5.36785 5.41193 5.52603 5.54891 5.69284 5.73576 5.79559 5.91494 6.02076 6.05266 6.11564 6.15424 6.19695 6.21892 6.23905 6.27636 6.31047 6.38876 6.53947 6.62310 6.79053 6.82218 6.88227 7.10827 7.16043 7.43078 7.56373 7.67498 7.86081 8.09866 8.11891 8.51153 8.81634 9.35915 10.84379 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.002508 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.767210 B =11161.765604 C =11766.575751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.219 3.781 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.339 6.339 14 C 0.453 3.547 15 O -0.515 6.515 16 C 0.154 3.846 17 H 0.122 0.878 18 N -0.708 5.708 19 C 0.563 3.437 20 O -0.532 6.532 21 C -0.138 4.138 22 C -0.079 4.079 23 C -0.128 4.128 24 C -0.063 4.063 25 C -0.119 4.119 26 C -0.132 4.132 27 C -0.055 4.055 28 C -0.096 4.096 29 C -0.135 4.135 30 C -0.160 4.160 31 H 0.033 0.967 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.109 0.891 36 H 0.267 0.733 37 H 0.408 0.592 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.054 0.946 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.503 9.045 -10.363 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 O -0.254 6.254 14 C 0.295 3.705 15 O -0.405 6.405 16 C 0.048 3.952 17 H 0.139 0.861 18 N -0.362 5.362 19 C 0.351 3.649 20 O -0.410 6.410 21 C -0.141 4.141 22 C -0.098 4.098 23 C -0.146 4.146 24 C -0.064 4.064 25 C -0.175 4.175 26 C -0.150 4.150 27 C -0.074 4.074 28 C -0.115 4.115 29 C -0.193 4.193 30 C -0.218 4.218 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.246 0.754 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.110 0.890 50 H 0.073 0.927 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.097 9.221 -10.450 22.057 hybrid contribution 0.586 -0.308 0.755 1.004 sum -16.511 8.913 -9.695 21.120 Atomic orbital electron populations 1.21865 0.98461 0.99062 1.00616 1.22019 0.92539 0.99260 1.03467 1.20746 0.95116 0.88799 0.78646 0.93496 1.20993 0.89565 1.39248 1.06179 0.91277 1.24878 0.99225 0.94733 0.95043 1.69876 1.35500 1.37792 1.09382 0.86345 0.83873 0.78525 0.77479 1.19987 1.21067 1.19898 1.86545 1.33542 1.61798 1.43564 1.23102 0.81556 0.77064 0.88760 1.90595 1.55714 1.58538 1.35646 1.20595 0.86128 0.96825 0.91660 0.86083 1.45684 1.18594 1.32431 1.39489 1.18145 0.86340 0.79278 0.81136 1.90779 1.54920 1.62510 1.32756 1.19901 0.94865 0.99231 1.00066 1.21408 0.93711 0.98851 0.95819 1.21004 0.96538 0.96584 1.00507 1.20168 0.96306 0.95061 0.94830 1.20866 0.93362 1.00705 1.02587 1.21026 0.94158 1.00984 0.98791 1.21264 0.95561 0.93240 0.97312 1.21394 0.99581 0.96478 0.94080 1.21867 1.01618 0.99962 0.95813 1.22086 0.94863 1.01033 1.03776 0.94779 0.92857 0.95017 0.93855 0.87327 0.92319 0.75390 0.85286 0.85342 0.90783 0.91211 0.91265 0.85390 0.84531 0.90978 0.91521 0.93120 0.93078 0.88983 0.92707 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.57 37.16 0.32 -2.62 16 2 C -0.13 -3.18 5.49 -26.73 -0.15 -3.33 16 3 C 0.22 5.53 2.25 -27.88 -0.06 5.47 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -14.10 8.89 -34.44 -0.31 -14.40 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.47 11.30 55.43 0.63 -23.84 16 9 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 O -0.34 -7.44 6.73 -39.28 -0.26 -7.71 16 14 C 0.45 8.84 5.71 36.00 0.21 9.05 16 15 O -0.51 -10.88 12.98 -18.75 -0.24 -11.12 16 16 C 0.15 2.45 2.38 -69.08 -0.16 2.28 16 17 H 0.12 2.00 7.58 -51.93 -0.39 1.60 16 18 N -0.71 -10.03 4.79 -55.88 -0.27 -10.30 16 19 C 0.56 7.92 6.13 -12.33 -0.08 7.85 16 20 O -0.53 -8.60 13.47 5.32 0.07 -8.53 16 21 C -0.14 -1.63 5.87 -104.97 -0.62 -2.25 16 22 C -0.08 -0.81 9.54 -39.18 -0.37 -1.18 16 23 C -0.13 -1.12 9.68 -39.64 -0.38 -1.50 16 24 C -0.06 -0.52 5.89 -104.53 -0.62 -1.13 16 25 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16 26 C -0.13 -1.13 9.68 -39.64 -0.38 -1.52 16 27 C -0.05 -0.58 9.60 -39.19 -0.38 -0.96 16 28 C -0.10 -1.36 2.68 -90.62 -0.24 -1.60 16 29 C -0.14 -1.78 7.72 37.16 0.29 -1.50 16 30 C -0.16 -2.35 8.68 37.16 0.32 -2.03 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.15 7.80 -51.93 -0.40 0.75 16 33 H 0.03 0.61 6.06 -51.93 -0.31 0.30 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.11 2.82 5.96 -51.93 -0.31 2.51 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.41 5.42 5.83 -40.82 -0.24 5.18 16 38 H 0.13 1.20 6.41 -52.49 -0.34 0.87 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 42 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 43 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 44 H 0.14 1.43 7.65 -52.48 -0.40 1.02 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.69 5.77 -51.93 -0.30 0.39 16 49 H 0.09 1.60 5.32 -51.93 -0.28 1.32 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 402.62 15.07 6.07 6.07 Total: -1.00 -29.70 402.62 -9.30 -39.00 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -7.93 Total: 8.77 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.35 Total: -8.05 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.36 Total: -34.14 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.44 Total: -27.36 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.70 -9.30 -39.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188085218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.651 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds