Wall clock time and date at job start Wed Apr 1 2020 04:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34237 * 116.99443 * 90.00402 * 13 3 2 15 15 O 1.20822 * 120.00184 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99347 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.47331 * 299.99474 * 16 14 13 18 18 N 1.46504 * 109.47031 * 179.97438 * 16 14 13 19 19 C 1.34770 * 120.00451 * 154.99532 * 18 16 14 20 20 O 1.21553 * 119.99693 * 0.02562 * 19 18 16 21 21 C 1.47841 * 120.00316 * 179.97438 * 19 18 16 22 22 C 1.39578 * 120.14144 * 359.72402 * 21 19 18 23 23 C 1.37968 * 119.85075 * 179.78801 * 22 21 19 24 24 C 1.38356 * 120.14376 * 0.49031 * 23 22 21 25 25 C 1.50702 * 119.85270 * 179.76321 * 24 23 22 26 26 C 1.38361 * 120.29290 * 359.74120 * 24 23 22 27 27 C 1.37950 * 120.14670 * 0.02562 * 26 24 23 28 28 C 1.52994 * 109.47665 * 59.99756 * 16 14 13 29 29 C 1.52997 * 109.47638 * 179.97438 * 28 16 14 30 30 C 1.53006 * 109.47207 * 300.00008 * 28 16 14 31 31 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 33 33 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 34 34 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 35 35 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 36 36 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 37 37 H 0.97004 * 119.99511 * 335.00105 * 18 16 14 38 38 H 1.07992 * 120.07625 * 0.02562 * 22 21 19 39 39 H 1.08000 * 119.92591 * 180.23020 * 23 22 21 40 40 H 1.08995 * 109.46967 * 269.97629 * 25 24 23 41 41 H 1.09003 * 109.47129 * 29.98044 * 25 24 23 42 42 H 1.09001 * 109.46849 * 149.98149 * 25 24 23 43 43 H 1.08003 * 119.92917 * 179.97438 * 26 24 23 44 44 H 1.08004 * 120.07730 * 179.97438 * 27 26 24 45 45 H 1.08999 * 109.46976 * 59.99500 * 28 16 14 46 46 H 1.08999 * 109.47040 * 59.99913 * 29 28 16 47 47 H 1.08993 * 109.47676 * 179.97438 * 29 28 16 48 48 H 1.09003 * 109.47309 * 300.00188 * 29 28 16 49 49 H 1.09002 * 109.46940 * 59.99800 * 30 28 16 50 50 H 1.09000 * 109.47166 * 179.97438 * 30 28 16 51 51 H 1.08999 * 109.46738 * 299.99638 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 8 1.6560 2.0916 -1.2408 14 6 0.4728 2.7255 -1.2560 15 8 -0.2191 2.7371 -0.2656 16 6 0.0072 3.4216 -2.5088 17 1 0.7241 4.1958 -2.7822 18 7 -1.3034 4.0315 -2.2702 19 6 -1.6979 5.0900 -3.0051 20 8 -0.9666 5.5386 -3.8662 21 6 -3.0207 5.7051 -2.7647 22 6 -3.8656 5.1882 -1.7813 23 6 -5.0969 5.7696 -1.5590 24 6 -5.4989 6.8562 -2.3152 25 6 -6.8475 7.4828 -2.0705 26 6 -4.6681 7.3704 -3.2949 27 6 -3.4324 6.8015 -3.5240 28 6 -0.1037 2.4046 -3.6463 29 6 -0.5770 3.1112 -4.9181 30 6 1.2647 1.7671 -3.8957 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3632 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.8288 -0.0530 2.9544 37 1 -1.8871 3.6733 -1.5832 38 1 -3.5547 4.3376 -1.1931 39 1 -5.7502 5.3729 -0.7959 40 1 -7.5929 6.9987 -2.7014 41 1 -7.1215 7.3577 -1.0229 42 1 -6.8033 8.5452 -2.3102 43 1 -4.9880 8.2186 -3.8820 44 1 -2.7850 7.2035 -4.2893 45 1 -0.8206 1.6304 -3.3729 46 1 0.1397 3.8856 -5.1916 47 1 -0.6556 2.3868 -5.7286 48 1 -1.5520 3.5650 -4.7402 49 1 1.6015 1.2635 -2.9896 50 1 1.1857 1.0422 -4.7059 51 1 1.9817 2.5413 -4.1691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188085218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:12 Heat of formation + Delta-G solvation = -129.000440 kcal Electronic energy + Delta-G solvation = -31436.121414 eV Core-core repulsion = 27299.388004 eV Total energy + Delta-G solvation = -4136.733410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.11618 -41.08195 -39.64798 -37.90218 -37.16311 -35.53214 -34.72292 -33.53950 -33.34022 -31.92772 -29.78810 -29.03375 -28.17523 -27.39601 -25.23537 -23.70013 -23.58915 -22.91102 -21.71520 -21.39766 -21.18612 -19.64983 -18.70157 -18.36518 -17.49782 -17.41992 -17.12600 -16.50096 -16.32351 -16.16983 -16.05624 -15.71579 -15.08816 -14.77355 -14.69425 -14.65496 -14.43121 -14.30111 -14.09092 -13.86118 -13.62489 -13.33499 -13.30688 -13.13326 -13.01947 -13.01443 -12.85749 -12.81351 -12.63651 -12.54863 -12.44792 -12.18962 -11.96058 -11.86930 -11.80773 -11.73097 -11.42893 -11.20995 -11.08413 -10.82997 -10.50176 -10.31497 -9.98489 -9.68260 -8.27024 -6.42879 -0.19798 0.39303 1.18646 1.39858 1.44377 1.47705 1.55439 1.77338 2.22015 2.42258 2.83538 3.02915 3.51054 3.60680 3.78460 3.83530 3.85761 3.98218 4.01953 4.24383 4.28769 4.37786 4.39620 4.41409 4.41929 4.55445 4.61927 4.74239 4.80540 4.83228 4.84462 4.87209 4.93278 5.04395 5.05529 5.08002 5.13458 5.14474 5.22362 5.22842 5.31838 5.36634 5.36772 5.42211 5.51312 5.58498 5.60184 5.68792 5.93542 5.95524 6.11125 6.32093 6.59299 6.88344 7.02467 7.27668 8.79086 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.002508 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.767210 B =11161.765604 C =11766.575751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.127 4.127 3 C 0.224 3.776 4 H 0.008 0.992 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.975 3.025 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.264 1.264 13 O -0.340 6.340 14 C 0.450 3.550 15 O -0.532 6.532 16 C 0.164 3.836 17 H 0.115 0.885 18 N -0.706 5.706 19 C 0.564 3.436 20 O -0.558 6.558 21 C -0.161 4.161 22 C -0.086 4.086 23 C -0.133 4.133 24 C -0.059 4.059 25 C -0.118 4.118 26 C -0.132 4.132 27 C -0.066 4.066 28 C -0.089 4.089 29 C -0.125 4.125 30 C -0.156 4.156 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.270 0.730 37 H 0.412 0.588 38 H 0.132 0.868 39 H 0.150 0.850 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.153 0.847 44 H 0.131 0.869 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.045 0.955 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.049 9.418 -11.356 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.025 0.975 5 C -0.585 4.585 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.799 3.201 10 H -0.197 1.197 11 H -0.203 1.203 12 H -0.189 1.189 13 O -0.256 6.256 14 C 0.294 3.706 15 O -0.423 6.423 16 C 0.058 3.942 17 H 0.132 0.868 18 N -0.360 5.360 19 C 0.354 3.646 20 O -0.438 6.438 21 C -0.164 4.164 22 C -0.105 4.105 23 C -0.150 4.150 24 C -0.059 4.059 25 C -0.174 4.174 26 C -0.150 4.150 27 C -0.085 4.085 28 C -0.109 4.109 29 C -0.182 4.182 30 C -0.214 4.214 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.251 0.749 38 H 0.150 0.850 39 H 0.168 0.832 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.171 0.829 44 H 0.149 0.851 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.670 9.599 -11.448 23.912 hybrid contribution 0.952 -0.339 1.072 1.473 sum -17.718 9.259 -10.376 22.524 Atomic orbital electron populations 1.21717 0.96180 1.00628 1.00181 1.21841 0.94522 0.97815 1.02361 1.20421 0.94396 0.89443 0.78650 0.97458 1.21287 0.90639 1.39955 1.06660 0.91671 1.25725 1.03817 0.94028 0.94480 1.69998 1.37311 1.37996 1.09726 0.85343 0.78257 0.78636 0.77857 1.19688 1.20332 1.18904 1.86572 1.34938 1.62265 1.41778 1.23818 0.80554 0.76454 0.89792 1.90583 1.55941 1.59073 1.36660 1.20540 0.86843 0.96737 0.90110 0.86780 1.45669 1.17807 1.32689 1.39866 1.18532 0.87009 0.78653 0.80401 1.90755 1.55929 1.63183 1.33894 1.19814 0.94180 1.00503 1.01941 1.21519 0.94273 0.99144 0.95514 1.21316 0.96116 0.96639 1.00978 1.20573 0.97300 0.94329 0.93686 1.20943 0.91731 1.01264 1.03486 1.21319 0.93239 1.01385 0.99007 1.21358 0.96556 0.93232 0.97308 1.21384 0.99597 0.96091 0.93808 1.21755 1.00854 0.99955 0.95607 1.22028 0.94914 1.01304 1.03132 0.92136 0.94483 0.94165 0.93401 0.89765 0.92102 0.74883 0.85008 0.83186 0.89545 0.90300 0.90114 0.82930 0.85063 0.90360 0.92563 0.91040 0.93571 0.91703 0.90487 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.57 71.98 0.62 -4.73 16 2 C -0.13 -6.13 5.49 30.59 0.17 -5.96 16 3 C 0.22 11.73 2.25 29.85 0.07 11.79 16 4 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 5 C -0.55 -30.38 8.89 25.60 0.23 -30.16 16 6 H 0.07 3.56 7.81 -2.91 -0.02 3.54 16 7 C 0.02 1.06 5.30 84.66 0.45 1.51 16 8 N -0.91 -51.34 11.30 21.45 0.24 -51.10 16 9 Si 0.98 42.64 29.54 68.60 2.03 44.66 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 13 O -0.34 -15.41 6.73 -51.48 -0.35 -15.75 16 14 C 0.45 18.05 5.71 71.23 0.41 18.46 16 15 O -0.53 -23.15 12.98 21.98 0.29 -22.87 16 16 C 0.16 5.30 2.38 44.24 0.11 5.40 16 17 H 0.11 3.88 7.58 -2.39 -0.02 3.86 16 18 N -0.71 -20.28 4.79 -449.00 -2.15 -22.43 16 19 C 0.56 16.12 6.13 86.79 0.53 16.65 16 20 O -0.56 -18.40 13.47 -3.88 -0.05 -18.45 16 21 C -0.16 -3.82 5.87 -20.09 -0.12 -3.94 16 22 C -0.09 -1.70 9.54 22.53 0.21 -1.48 16 23 C -0.13 -2.06 9.68 22.23 0.22 -1.84 16 24 C -0.06 -0.81 5.89 -19.81 -0.12 -0.93 16 25 C -0.12 -0.88 10.01 71.24 0.71 -0.17 16 26 C -0.13 -2.01 9.68 22.23 0.22 -1.80 16 27 C -0.07 -1.36 9.60 22.53 0.22 -1.15 16 28 C -0.09 -2.48 2.68 -10.79 -0.03 -2.51 16 29 C -0.12 -3.15 7.72 71.98 0.56 -2.59 16 30 C -0.16 -4.49 8.68 71.98 0.62 -3.87 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.62 7.80 -2.39 -0.02 1.60 16 33 H 0.04 1.56 6.06 -2.39 -0.01 1.54 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 4.49 5.96 -2.39 -0.01 4.48 16 36 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 37 H 0.41 11.11 5.83 -92.71 -0.54 10.57 16 38 H 0.13 2.42 6.41 -2.91 -0.02 2.40 16 39 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 40 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 42 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 43 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 44 H 0.13 2.77 7.65 -2.91 -0.02 2.75 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.06 1.55 7.53 -2.39 -0.02 1.53 16 47 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.05 1.22 5.77 -2.39 -0.01 1.20 16 49 H 0.06 2.26 5.32 -2.39 -0.01 2.25 16 50 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -65.67 402.62 5.46 -60.20 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.40 Total: 33.05 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.06 Total: -7.31 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -1.91 Total: -73.53 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -0.11 Total: -57.07 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -65.67 5.46 -60.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188085218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.800 kcal (2) G-P(sol) polarization free energy of solvation -65.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds