Wall clock time and date at job start Wed Apr 1 2020 04:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46983 * 2 1 4 4 H 1.09001 * 109.47314 * 54.99804 * 3 2 1 5 5 C 1.50696 * 109.47340 * 174.99919 * 3 2 1 6 6 H 1.08003 * 120.00415 * 119.99742 * 5 3 2 7 7 C 1.37884 * 119.99808 * 299.99939 * 5 3 2 8 8 N 1.31506 * 120.00196 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99928 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47203 * 120.00009 * 9 7 5 12 12 H 1.48504 * 109.47310 * 240.00252 * 9 7 5 13 13 O 1.45203 * 109.46979 * 294.99740 * 3 2 1 14 14 C 1.34228 * 116.99709 * 90.00080 * 13 3 2 15 15 O 1.20827 * 120.00290 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99890 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.47034 * 59.99985 * 16 14 13 18 18 N 1.46496 * 109.47429 * 180.02562 * 16 14 13 19 19 C 1.34772 * 120.00235 * 205.00359 * 18 16 14 20 20 O 1.21549 * 119.99923 * 359.97438 * 19 18 16 21 21 C 1.47846 * 120.00002 * 179.97438 * 19 18 16 22 22 C 1.39578 * 120.14099 * 179.97438 * 21 19 18 23 23 C 1.37966 * 119.84976 * 179.97438 * 22 21 19 24 24 C 1.38355 * 120.14503 * 0.27870 * 23 22 21 25 25 C 1.50701 * 119.85310 * 179.69903 * 24 23 22 26 26 C 1.38364 * 120.29045 * 359.44583 * 24 23 22 27 27 C 1.37949 * 120.14776 * 0.55105 * 26 24 23 28 28 C 1.52999 * 109.47128 * 299.99867 * 16 14 13 29 29 C 1.52992 * 109.47375 * 179.97438 * 28 16 14 30 30 C 1.53000 * 109.47159 * 300.00241 * 28 16 14 31 31 H 1.09009 * 109.46976 * 60.00263 * 1 2 3 32 32 H 1.08998 * 109.46809 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47370 * 300.00314 * 1 2 3 34 34 H 1.08999 * 109.47628 * 240.00160 * 2 1 3 35 35 H 1.08996 * 109.47090 * 119.99464 * 2 1 3 36 36 H 0.96994 * 120.00415 * 179.97438 * 8 7 5 37 37 H 0.97009 * 120.00003 * 24.99862 * 18 16 14 38 38 H 1.08000 * 120.07643 * 359.95474 * 22 21 19 39 39 H 1.08002 * 119.92372 * 179.97438 * 23 22 21 40 40 H 1.08993 * 109.47260 * 90.00353 * 25 24 23 41 41 H 1.08999 * 109.47185 * 210.00152 * 25 24 23 42 42 H 1.09000 * 109.47229 * 329.99812 * 25 24 23 43 43 H 1.08009 * 119.92388 * 180.27618 * 26 24 23 44 44 H 1.07996 * 120.07923 * 179.75018 * 27 26 24 45 45 H 1.09009 * 109.46769 * 60.00036 * 28 16 14 46 46 H 1.09002 * 109.47600 * 180.02562 * 29 28 16 47 47 H 1.09008 * 109.47402 * 300.00080 * 29 28 16 48 48 H 1.09001 * 109.47262 * 60.00215 * 29 28 16 49 49 H 1.08996 * 109.47400 * 59.99777 * 30 28 16 50 50 H 1.09002 * 109.46899 * 180.02562 * 30 28 16 51 51 H 1.09001 * 109.46888 * 299.99424 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8786 1.2281 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8802 1.3813 10 1 6.5987 1.5455 0.1938 11 1 6.3999 1.6160 2.6093 12 1 6.4962 -0.5188 1.4628 13 8 1.6558 2.0917 -1.2408 14 6 0.4727 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2653 16 6 0.0074 3.4225 -2.5085 17 1 -0.0712 2.6985 -3.3194 18 7 -1.3027 4.0330 -2.2697 19 6 -2.1380 4.2618 -3.3023 20 8 -1.8041 3.9619 -4.4319 21 6 -3.4603 4.8774 -3.0611 22 6 -4.3275 5.1161 -4.1285 23 6 -5.5603 5.6904 -3.8965 24 6 -5.9353 6.0348 -2.6101 25 6 -7.2807 6.6680 -2.3650 26 6 -5.0827 5.7957 -1.5469 27 6 -3.8473 5.2220 -1.7651 28 6 1.0138 4.5095 -2.8910 29 6 0.5418 5.2168 -4.1629 30 6 1.1242 5.5258 -1.7526 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 3.8292 -0.0617 2.9495 37 1 -1.5691 4.2726 -1.3681 38 1 -4.0340 4.8521 -5.1338 39 1 -6.2320 5.8760 -4.7216 40 1 -8.0200 5.8893 -2.1775 41 1 -7.2198 7.3272 -1.4991 42 1 -7.5755 7.2455 -3.2412 43 1 -5.3833 6.0628 -0.5445 44 1 -3.1810 5.0395 -0.9349 45 1 1.9889 4.0556 -3.0687 46 1 1.2591 5.9910 -4.4357 47 1 0.4636 4.4926 -4.9738 48 1 -0.4332 5.6707 -3.9857 49 1 1.4607 5.0216 -0.8468 50 1 1.8409 6.3005 -2.0254 51 1 0.1492 5.9797 -1.5751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188085265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:20 Heat of formation + Delta-G solvation = -116.840097 kcal Electronic energy + Delta-G solvation = -31445.870574 eV Core-core repulsion = 27309.664476 eV Total energy + Delta-G solvation = -4136.206098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82613 -39.77940 -38.69093 -36.47803 -35.58140 -33.72335 -33.47326 -32.62310 -31.40751 -31.17769 -28.53961 -27.53524 -27.03968 -26.60624 -23.35503 -22.93455 -22.72465 -21.42452 -20.70724 -19.85319 -19.40095 -18.40729 -16.93543 -16.59580 -16.47932 -15.93277 -15.68122 -15.38937 -15.12366 -15.00626 -14.74243 -14.28468 -14.16711 -13.88972 -13.82571 -13.56034 -13.28024 -13.04541 -12.88548 -12.58833 -12.38411 -12.25145 -11.96750 -11.93340 -11.82059 -11.56545 -11.39334 -11.28375 -11.24481 -11.21153 -11.00594 -10.90986 -10.70076 -10.68634 -10.31872 -9.98854 -9.85501 -9.70656 -9.44069 -9.26389 -9.12863 -8.91640 -8.85888 -8.50402 -6.23003 -4.30061 0.60891 1.11114 2.69166 2.80137 2.87837 3.20812 3.28372 3.33214 3.62104 3.71215 4.28953 4.42581 4.48512 4.62751 4.74314 4.85289 4.95026 5.03672 5.09101 5.09141 5.19547 5.22126 5.36055 5.41228 5.51818 5.61004 5.69809 5.73489 5.75768 5.81317 5.98551 6.02367 6.06667 6.11637 6.14825 6.18280 6.23834 6.24575 6.32097 6.39579 6.48065 6.49571 6.62143 6.80907 6.90194 7.10673 7.17149 7.43813 7.56577 7.67756 7.86385 8.09809 8.12435 8.52119 8.81959 9.35337 10.83762 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.002511 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.227982 B =11147.294949 C =11797.637730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.347 6.347 14 C 0.455 3.545 15 O -0.515 6.515 16 C 0.156 3.844 17 H 0.120 0.880 18 N -0.705 5.705 19 C 0.563 3.437 20 O -0.533 6.533 21 C -0.137 4.137 22 C -0.055 4.055 23 C -0.132 4.132 24 C -0.063 4.063 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.079 4.079 28 C -0.100 4.100 29 C -0.136 4.136 30 C -0.150 4.150 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.110 0.890 36 H 0.266 0.734 37 H 0.408 0.592 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.052 0.948 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 12.107 -9.199 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.262 6.262 14 C 0.297 3.703 15 O -0.406 6.406 16 C 0.049 3.951 17 H 0.138 0.862 18 N -0.359 5.359 19 C 0.351 3.649 20 O -0.411 6.411 21 C -0.140 4.140 22 C -0.074 4.074 23 C -0.150 4.150 24 C -0.064 4.064 25 C -0.175 4.175 26 C -0.146 4.146 27 C -0.098 4.098 28 C -0.120 4.120 29 C -0.193 4.193 30 C -0.207 4.207 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.246 0.754 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.115 0.885 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.428 11.749 -9.486 22.314 hybrid contribution 0.754 -0.118 0.874 1.160 sum -15.674 11.632 -8.612 21.334 Atomic orbital electron populations 1.21854 0.98380 0.99098 1.00608 1.22035 0.92612 0.99342 1.03492 1.20738 0.95129 0.88745 0.78377 0.93444 1.21068 0.89541 1.38977 1.06249 0.91181 1.24881 0.99252 0.94725 0.95065 1.69889 1.35332 1.37806 1.09507 0.86238 0.83874 0.77927 0.78239 1.19428 1.20768 1.20700 1.86481 1.33342 1.62009 1.44365 1.23045 0.81319 0.76978 0.88941 1.90596 1.55500 1.58883 1.35578 1.20498 0.83507 0.95925 0.95144 0.86212 1.45657 1.16233 1.62736 1.11278 1.18136 0.83812 0.78350 0.84598 1.90775 1.76163 1.51994 1.22154 1.19903 0.95192 1.04410 0.94541 1.21264 0.92432 0.94628 0.99058 1.21027 0.96646 1.00692 0.96603 1.20166 0.96264 0.96590 0.93342 1.20864 0.93441 1.00459 1.02756 1.21001 0.93933 1.00662 0.99031 1.21402 0.96529 0.95954 0.95906 1.21487 0.98762 0.95296 0.96422 1.21865 1.00560 1.00263 0.96610 1.21862 1.01611 0.98985 0.98250 0.95101 0.94754 0.92822 0.93873 0.87242 0.92412 0.75359 0.84546 0.85404 0.90756 0.91232 0.91281 0.85350 0.85303 0.88500 0.93073 0.91632 0.92890 0.92130 0.92098 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.57 37.16 0.32 -2.75 16 2 C -0.14 -3.33 5.49 -26.73 -0.15 -3.48 16 3 C 0.22 5.69 2.25 -27.88 -0.06 5.63 16 4 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 5 C -0.52 -14.13 8.90 -34.44 -0.31 -14.43 16 6 H 0.07 1.89 7.81 -52.48 -0.41 1.47 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.52 11.29 55.43 0.63 -23.89 16 9 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 O -0.35 -7.84 9.71 -39.25 -0.38 -8.22 16 14 C 0.46 8.91 4.51 36.01 0.16 9.07 16 15 O -0.52 -10.85 12.98 -18.75 -0.24 -11.09 16 16 C 0.16 2.46 2.52 -69.08 -0.17 2.28 16 17 H 0.12 1.93 7.58 -51.93 -0.39 1.53 16 18 N -0.70 -9.85 4.02 -55.88 -0.22 -10.08 16 19 C 0.56 7.81 6.13 -12.33 -0.08 7.73 16 20 O -0.53 -8.50 13.47 5.32 0.07 -8.43 16 21 C -0.14 -1.61 5.87 -104.97 -0.62 -2.23 16 22 C -0.05 -0.58 9.60 -39.18 -0.38 -0.95 16 23 C -0.13 -1.12 9.68 -39.64 -0.38 -1.51 16 24 C -0.06 -0.51 5.89 -104.53 -0.62 -1.13 16 25 C -0.12 -0.64 10.00 36.01 0.36 -0.28 16 26 C -0.13 -1.11 9.68 -39.64 -0.38 -1.50 16 27 C -0.08 -0.81 9.54 -39.19 -0.37 -1.18 16 28 C -0.10 -1.43 2.74 -90.62 -0.25 -1.68 16 29 C -0.14 -1.77 7.72 37.15 0.29 -1.49 16 30 C -0.15 -2.07 8.79 37.16 0.33 -1.75 16 31 H 0.03 0.64 6.06 -51.92 -0.31 0.33 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.20 7.80 -51.93 -0.40 0.79 16 34 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.41 5.41 5.83 -40.82 -0.24 5.18 16 38 H 0.14 1.41 7.65 -52.49 -0.40 1.01 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 42 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 43 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.13 1.20 6.41 -52.49 -0.34 0.86 16 45 H 0.10 1.44 8.11 -51.92 -0.42 1.02 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.90 7.53 -51.92 -0.39 0.51 16 48 H 0.05 0.71 5.77 -51.93 -0.30 0.42 16 49 H 0.06 0.98 7.22 -51.93 -0.37 0.60 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.05 0.68 7.60 -51.93 -0.39 0.28 16 LS Contribution 405.27 15.07 6.11 6.11 Total: -1.00 -29.99 405.27 -9.46 -39.45 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.99 Total: 8.53 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.40 Total: -8.03 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.40 Total: -33.97 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.55 Total: -27.74 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.99 -9.46 -39.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188085265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.390 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds