Wall clock time and date at job start Wed Apr 1 2020 04:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46983 * 2 1 4 4 H 1.09001 * 109.47314 * 54.99804 * 3 2 1 5 5 C 1.50696 * 109.47340 * 174.99919 * 3 2 1 6 6 H 1.08003 * 120.00415 * 119.99742 * 5 3 2 7 7 C 1.37884 * 119.99808 * 299.99939 * 5 3 2 8 8 N 1.31506 * 120.00196 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99928 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47203 * 120.00009 * 9 7 5 12 12 H 1.48504 * 109.47310 * 240.00252 * 9 7 5 13 13 O 1.45203 * 109.46979 * 294.99740 * 3 2 1 14 14 C 1.34228 * 116.99709 * 90.00080 * 13 3 2 15 15 O 1.20827 * 120.00290 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99890 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.47034 * 59.99985 * 16 14 13 18 18 N 1.46496 * 109.47429 * 180.02562 * 16 14 13 19 19 C 1.34772 * 120.00235 * 205.00359 * 18 16 14 20 20 O 1.21549 * 119.99923 * 359.97438 * 19 18 16 21 21 C 1.47846 * 120.00002 * 179.97438 * 19 18 16 22 22 C 1.39578 * 120.14099 * 179.97438 * 21 19 18 23 23 C 1.37966 * 119.84976 * 179.97438 * 22 21 19 24 24 C 1.38355 * 120.14503 * 0.27870 * 23 22 21 25 25 C 1.50701 * 119.85310 * 179.69903 * 24 23 22 26 26 C 1.38364 * 120.29045 * 359.44583 * 24 23 22 27 27 C 1.37949 * 120.14776 * 0.55105 * 26 24 23 28 28 C 1.52999 * 109.47128 * 299.99867 * 16 14 13 29 29 C 1.52992 * 109.47375 * 179.97438 * 28 16 14 30 30 C 1.53000 * 109.47159 * 300.00241 * 28 16 14 31 31 H 1.09009 * 109.46976 * 60.00263 * 1 2 3 32 32 H 1.08998 * 109.46809 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47370 * 300.00314 * 1 2 3 34 34 H 1.08999 * 109.47628 * 240.00160 * 2 1 3 35 35 H 1.08996 * 109.47090 * 119.99464 * 2 1 3 36 36 H 0.96994 * 120.00415 * 179.97438 * 8 7 5 37 37 H 0.97009 * 120.00003 * 24.99862 * 18 16 14 38 38 H 1.08000 * 120.07643 * 359.95474 * 22 21 19 39 39 H 1.08002 * 119.92372 * 179.97438 * 23 22 21 40 40 H 1.08993 * 109.47260 * 90.00353 * 25 24 23 41 41 H 1.08999 * 109.47185 * 210.00152 * 25 24 23 42 42 H 1.09000 * 109.47229 * 329.99812 * 25 24 23 43 43 H 1.08009 * 119.92388 * 180.27618 * 26 24 23 44 44 H 1.07996 * 120.07923 * 179.75018 * 27 26 24 45 45 H 1.09009 * 109.46769 * 60.00036 * 28 16 14 46 46 H 1.09002 * 109.47600 * 180.02562 * 29 28 16 47 47 H 1.09008 * 109.47402 * 300.00080 * 29 28 16 48 48 H 1.09001 * 109.47262 * 60.00215 * 29 28 16 49 49 H 1.08996 * 109.47400 * 59.99777 * 30 28 16 50 50 H 1.09002 * 109.46899 * 180.02562 * 30 28 16 51 51 H 1.09001 * 109.46888 * 299.99424 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8786 1.2281 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8802 1.3813 10 1 6.5987 1.5455 0.1938 11 1 6.3999 1.6160 2.6093 12 1 6.4962 -0.5188 1.4628 13 8 1.6558 2.0917 -1.2408 14 6 0.4727 2.7254 -1.2560 15 8 -0.2189 2.7377 -0.2653 16 6 0.0074 3.4225 -2.5085 17 1 -0.0712 2.6985 -3.3194 18 7 -1.3027 4.0330 -2.2697 19 6 -2.1380 4.2618 -3.3023 20 8 -1.8041 3.9619 -4.4319 21 6 -3.4603 4.8774 -3.0611 22 6 -4.3275 5.1161 -4.1285 23 6 -5.5603 5.6904 -3.8965 24 6 -5.9353 6.0348 -2.6101 25 6 -7.2807 6.6680 -2.3650 26 6 -5.0827 5.7957 -1.5469 27 6 -3.8473 5.2220 -1.7651 28 6 1.0138 4.5095 -2.8910 29 6 0.5418 5.2168 -4.1629 30 6 1.1242 5.5258 -1.7526 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 3.8292 -0.0617 2.9495 37 1 -1.5691 4.2726 -1.3681 38 1 -4.0340 4.8521 -5.1338 39 1 -6.2320 5.8760 -4.7216 40 1 -8.0200 5.8893 -2.1775 41 1 -7.2198 7.3272 -1.4991 42 1 -7.5755 7.2455 -3.2412 43 1 -5.3833 6.0628 -0.5445 44 1 -3.1810 5.0395 -0.9349 45 1 1.9889 4.0556 -3.0687 46 1 1.2591 5.9910 -4.4357 47 1 0.4636 4.4926 -4.9738 48 1 -0.4332 5.6707 -3.9857 49 1 1.4607 5.0216 -0.8468 50 1 1.8409 6.3005 -2.0254 51 1 0.1492 5.9797 -1.5751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188085265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:19 Heat of formation + Delta-G solvation = -131.099754 kcal Electronic energy + Delta-G solvation = -31446.488919 eV Core-core repulsion = 27309.664476 eV Total energy + Delta-G solvation = -4136.824443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12881 -41.06775 -39.67085 -37.99179 -37.08055 -35.54033 -34.60362 -33.46568 -33.36641 -31.91469 -29.86841 -29.02580 -28.19722 -27.71443 -25.25718 -23.73242 -23.60978 -22.97159 -21.89694 -21.37626 -20.73535 -19.63111 -18.73221 -18.20160 -17.87284 -17.20162 -17.06730 -16.56198 -16.44924 -16.15225 -15.85174 -15.55742 -15.15838 -14.96840 -14.79494 -14.67039 -14.58515 -14.44570 -14.23730 -13.88716 -13.55400 -13.38146 -13.19411 -13.13234 -13.02600 -13.01299 -12.85166 -12.80222 -12.58168 -12.56582 -12.44919 -12.15235 -12.12682 -11.95576 -11.84660 -11.77876 -11.48577 -11.26417 -11.08859 -10.84291 -10.54759 -10.30095 -9.97859 -9.67549 -8.28156 -6.44087 -0.18829 0.39939 1.19880 1.40207 1.41903 1.49080 1.58326 1.78937 2.22997 2.42137 2.84467 3.01934 3.51622 3.61337 3.74759 3.82966 3.85135 3.98710 4.02291 4.12405 4.34086 4.34495 4.36185 4.39405 4.42945 4.51586 4.57405 4.73080 4.74737 4.78838 4.81248 4.85463 4.87335 4.93274 5.01048 5.05667 5.07298 5.15873 5.17959 5.23223 5.27558 5.31506 5.35547 5.37765 5.39664 5.51038 5.59122 5.65064 5.93134 5.94162 6.08881 6.33422 6.58679 6.87972 7.03830 7.26656 8.78695 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.002511 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.227982 B =11147.294949 C =11797.637730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.132 4.132 3 C 0.228 3.772 4 H 0.013 0.987 5 C -0.546 4.546 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.977 3.023 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.273 1.273 13 O -0.355 6.355 14 C 0.454 3.546 15 O -0.531 6.531 16 C 0.166 3.834 17 H 0.118 0.882 18 N -0.702 5.702 19 C 0.565 3.435 20 O -0.558 6.558 21 C -0.160 4.160 22 C -0.065 4.065 23 C -0.132 4.132 24 C -0.059 4.059 25 C -0.118 4.118 26 C -0.133 4.133 27 C -0.086 4.086 28 C -0.098 4.098 29 C -0.124 4.124 30 C -0.145 4.145 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.270 0.730 37 H 0.412 0.588 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.150 0.850 44 H 0.131 0.869 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.031 0.969 50 H 0.079 0.921 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.699 13.380 -9.809 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.170 4.170 3 C 0.175 3.825 4 H 0.030 0.970 5 C -0.584 4.584 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.801 3.199 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.199 1.199 13 O -0.270 6.270 14 C 0.298 3.702 15 O -0.421 6.421 16 C 0.059 3.941 17 H 0.136 0.864 18 N -0.357 5.357 19 C 0.355 3.645 20 O -0.437 6.437 21 C -0.163 4.163 22 C -0.084 4.084 23 C -0.149 4.149 24 C -0.059 4.059 25 C -0.174 4.174 26 C -0.151 4.151 27 C -0.105 4.105 28 C -0.117 4.117 29 C -0.181 4.181 30 C -0.202 4.202 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.250 0.750 38 H 0.150 0.850 39 H 0.171 0.829 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.167 0.833 44 H 0.149 0.851 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.050 0.950 50 H 0.098 0.902 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.598 13.034 -10.098 24.115 hybrid contribution 0.972 -0.461 1.073 1.519 sum -16.626 12.573 -9.025 22.714 Atomic orbital electron populations 1.21705 0.96322 1.00579 1.00009 1.21894 0.94404 0.98287 1.02384 1.20417 0.94585 0.89125 0.78404 0.96964 1.21331 0.90438 1.39816 1.06779 0.91587 1.25745 1.03961 0.93941 0.94439 1.69999 1.37267 1.37956 1.09896 0.85212 0.78059 0.78247 0.78381 1.18832 1.20151 1.19865 1.86463 1.35088 1.62625 1.42858 1.23756 0.80134 0.76270 0.90072 1.90581 1.55629 1.59261 1.36644 1.20430 0.84845 0.96223 0.92589 0.86400 1.45627 1.15622 1.62689 1.11712 1.18502 0.84321 0.77712 0.83962 1.90753 1.76799 1.53208 1.22988 1.19810 0.94428 1.06342 0.95756 1.21359 0.93250 0.95216 0.98577 1.21322 0.96071 0.99758 0.97792 1.20565 0.97223 0.95238 0.92871 1.20940 0.91777 1.00851 1.03865 1.21306 0.93308 1.00036 1.00414 1.21503 0.97429 0.96231 0.95308 1.21493 0.97936 0.94964 0.97321 1.21749 1.00782 1.00270 0.95313 1.21820 1.02676 0.99027 0.96659 0.94860 0.92181 0.94130 0.93739 0.89375 0.92052 0.74955 0.85019 0.82943 0.89803 0.90215 0.89999 0.83273 0.85132 0.89149 0.91131 0.92448 0.93284 0.95013 0.90216 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 8.57 71.98 0.62 -4.99 16 2 C -0.13 -6.57 5.49 30.59 0.17 -6.40 16 3 C 0.23 12.10 2.25 29.85 0.07 12.16 16 4 H 0.01 0.74 7.16 -2.39 -0.02 0.73 16 5 C -0.55 -30.39 8.90 25.60 0.23 -30.16 16 6 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -51.37 11.29 21.45 0.24 -51.13 16 9 Si 0.98 42.44 29.54 68.60 2.03 44.47 16 10 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 O -0.35 -16.60 9.71 -51.40 -0.50 -17.10 16 14 C 0.45 18.35 4.51 71.24 0.32 18.67 16 15 O -0.53 -23.09 12.98 21.96 0.29 -22.81 16 16 C 0.17 5.33 2.52 44.25 0.11 5.45 16 17 H 0.12 3.88 7.58 -2.39 -0.02 3.86 16 18 N -0.70 -19.88 4.02 -448.99 -1.81 -21.68 16 19 C 0.57 15.79 6.13 86.79 0.53 16.32 16 20 O -0.56 -17.98 13.47 -3.87 -0.05 -18.03 16 21 C -0.16 -3.73 5.87 -20.09 -0.12 -3.84 16 22 C -0.07 -1.32 9.60 22.53 0.22 -1.11 16 23 C -0.13 -1.97 9.68 22.23 0.22 -1.76 16 24 C -0.06 -0.80 5.89 -19.81 -0.12 -0.92 16 25 C -0.12 -0.87 10.00 71.24 0.71 -0.16 16 26 C -0.13 -2.05 9.68 22.23 0.22 -1.83 16 27 C -0.09 -1.69 9.54 22.53 0.21 -1.47 16 28 C -0.10 -2.79 2.74 -10.80 -0.03 -2.82 16 29 C -0.12 -3.14 7.72 71.98 0.56 -2.59 16 30 C -0.14 -3.97 8.79 71.98 0.63 -3.34 16 31 H 0.03 1.40 6.06 -2.38 -0.01 1.38 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 1.84 7.80 -2.39 -0.02 1.82 16 34 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.09 4.80 5.95 -2.39 -0.01 4.78 16 36 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.41 11.11 5.83 -92.70 -0.54 10.57 16 38 H 0.13 2.72 7.65 -2.91 -0.02 2.70 16 39 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 42 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 43 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.13 2.40 6.41 -2.91 -0.02 2.39 16 45 H 0.09 2.71 8.11 -2.38 -0.02 2.69 16 46 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 47 H 0.06 1.56 7.53 -2.38 -0.02 1.54 16 48 H 0.05 1.29 5.77 -2.39 -0.01 1.27 16 49 H 0.03 1.04 7.22 -2.39 -0.02 1.03 16 50 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 51 H 0.06 1.60 7.60 -2.39 -0.02 1.58 16 Total: -1.00 -65.83 405.27 5.58 -60.25 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.39 Total: 33.32 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 4.99 Total: -7.30 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -1.56 Total: -72.81 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -0.27 Total: -57.93 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -65.83 5.58 -60.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188085265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.851 kcal (2) G-P(sol) polarization free energy of solvation -65.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds