Wall clock time and date at job start Wed Apr 1 2020 04:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 H 1.09000 * 109.47137 * 306.79211 * 3 2 1 5 5 C 1.50702 * 109.47228 * 186.79019 * 3 2 1 6 6 H 1.07996 * 120.00081 * 244.35775 * 5 3 2 7 7 C 1.37882 * 119.99874 * 64.35272 * 5 3 2 8 8 N 1.31509 * 119.99746 * 197.57003 * 7 5 3 9 9 Si 1.86804 * 119.99938 * 17.57354 * 7 5 3 10 10 H 1.48501 * 109.46972 * 92.19592 * 9 7 5 11 11 H 1.48494 * 109.46850 * 212.19506 * 9 7 5 12 12 H 1.48496 * 109.47073 * 332.19389 * 9 7 5 13 13 O 1.45201 * 109.47265 * 66.79014 * 3 2 1 14 14 C 1.34230 * 116.99942 * 264.33037 * 13 3 2 15 15 O 1.20828 * 120.00015 * 5.78054 * 14 13 3 16 16 C 1.50693 * 119.99897 * 185.78043 * 14 13 3 17 17 H 1.08994 * 109.47648 * 56.12910 * 16 14 13 18 18 N 1.46502 * 109.47111 * 176.13315 * 16 14 13 19 19 C 1.34777 * 119.99598 * 205.00052 * 18 16 14 20 20 O 1.21552 * 120.00316 * 359.97438 * 19 18 16 21 21 C 1.47847 * 119.99762 * 180.02562 * 19 18 16 22 22 C 1.39577 * 120.14469 * 179.97438 * 21 19 18 23 23 C 1.37961 * 119.85269 * 179.97438 * 22 21 19 24 24 C 1.38361 * 120.14008 * 0.27867 * 23 22 21 25 25 C 1.50707 * 119.84836 * 179.70224 * 24 23 22 26 26 C 1.38354 * 120.29687 * 359.44297 * 24 23 22 27 27 C 1.37959 * 120.14477 * 0.55861 * 26 24 23 28 28 C 1.53007 * 109.46960 * 296.12910 * 16 14 13 29 29 C 1.53007 * 109.47134 * 176.35168 * 28 16 14 30 30 C 1.52994 * 109.47140 * 296.35445 * 28 16 14 31 31 H 1.08997 * 109.47001 * 183.91821 * 1 2 3 32 32 H 1.08999 * 109.47220 * 303.91994 * 1 2 3 33 33 H 1.09006 * 109.47029 * 63.92242 * 1 2 3 34 34 H 1.09000 * 109.47008 * 239.99930 * 2 1 3 35 35 H 1.08996 * 109.47187 * 120.00002 * 2 1 3 36 36 H 0.97005 * 119.99901 * 180.02562 * 8 7 5 37 37 H 0.96997 * 119.99863 * 24.99933 * 18 16 14 38 38 H 1.08000 * 120.07435 * 359.95669 * 22 21 19 39 39 H 1.07998 * 119.92751 * 180.02562 * 23 22 21 40 40 H 1.08996 * 109.47391 * 89.99946 * 25 24 23 41 41 H 1.08995 * 109.47006 * 209.99957 * 25 24 23 42 42 H 1.08999 * 109.47216 * 329.99928 * 25 24 23 43 43 H 1.07997 * 119.92926 * 180.27666 * 26 24 23 44 44 H 1.07999 * 120.07568 * 179.74424 * 27 26 24 45 45 H 1.09003 * 109.46737 * 56.35935 * 28 16 14 46 46 H 1.08996 * 109.47001 * 300.00477 * 29 28 16 47 47 H 1.09004 * 109.46656 * 60.00184 * 29 28 16 48 48 H 1.08990 * 109.47097 * 180.02562 * 29 28 16 49 49 H 1.08997 * 109.47201 * 66.92727 * 30 28 16 50 50 H 1.09004 * 109.46523 * 186.92655 * 30 28 16 51 51 H 1.08997 * 109.46949 * 306.92154 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5808 1.9902 -0.8230 5 6 3.5376 1.4458 -0.1680 6 1 4.1691 1.8182 0.6250 7 6 4.1016 0.9734 -1.3341 8 7 5.3760 0.6501 -1.3642 9 14 3.0555 0.7925 -2.8711 10 1 3.1442 2.0352 -3.6793 11 1 3.5486 -0.3558 -3.6732 12 1 1.6421 0.5545 -2.4827 13 8 1.6927 2.0787 1.2582 14 6 0.5674 2.8101 1.2809 15 8 -0.1592 2.8310 0.3158 16 6 0.2104 3.6052 2.5103 17 1 1.0295 4.2808 2.7566 18 7 -1.0039 4.3834 2.2529 19 6 -1.2430 5.5102 2.9526 20 8 -0.4515 5.8806 3.7974 21 6 -2.4688 6.2952 2.6933 22 6 -2.7198 7.4623 3.4165 23 6 -3.8652 8.1905 3.1693 24 6 -4.7669 7.7629 2.2109 25 6 -6.0194 8.5597 1.9509 26 6 -4.5214 6.6100 1.4866 27 6 -3.3798 5.8725 1.7240 28 6 -0.0337 2.6514 3.6814 29 6 -0.3069 3.4614 4.9505 30 6 -1.2412 1.7638 3.3731 31 1 -0.3633 -1.0252 0.0702 32 1 -0.3633 0.5735 0.8528 33 1 -0.3633 0.4518 -0.9231 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 5.7729 0.3180 -2.1847 37 1 -1.6357 4.0876 1.5790 38 1 -2.0190 7.7945 4.1681 39 1 -4.0604 9.0939 3.7278 40 1 -5.8243 9.3006 1.1757 41 1 -6.8142 7.8903 1.6220 42 1 -6.3256 9.0646 2.8671 43 1 -5.2271 6.2841 0.7368 44 1 -3.1913 4.9705 1.1608 45 1 0.8473 2.0273 3.8314 46 1 0.5534 4.0937 5.1700 47 1 -1.1878 4.0856 4.8005 48 1 -0.4803 2.7819 5.7848 49 1 -1.0009 1.0987 2.5437 50 1 -1.4908 1.1714 4.2535 51 1 -2.0921 2.3891 3.1028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188085286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:23 Heat of formation + Delta-G solvation = -127.109194 kcal Electronic energy + Delta-G solvation = -31542.081699 eV Core-core repulsion = 27405.430300 eV Total energy + Delta-G solvation = -4136.651399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18313 -41.11654 -39.68556 -38.09034 -37.11199 -35.51049 -34.62108 -33.89753 -33.46465 -31.91612 -30.01339 -29.29177 -28.15933 -27.78268 -24.92939 -23.75736 -23.62586 -23.03630 -21.99591 -21.44478 -20.74252 -19.78078 -18.92556 -18.42320 -17.74161 -17.39264 -17.15761 -16.77883 -16.29494 -16.11719 -15.87343 -15.59744 -15.19612 -15.01166 -14.82978 -14.73707 -14.60849 -14.48080 -14.26967 -14.04488 -13.97758 -13.62050 -13.27643 -13.18474 -13.03248 -13.01459 -12.92560 -12.80724 -12.62961 -12.56459 -12.44230 -12.13854 -11.98870 -11.95673 -11.83555 -11.64019 -11.55354 -11.32359 -11.10501 -10.99624 -10.72368 -10.31869 -9.97889 -9.67771 -8.47340 -6.49943 -0.19058 0.39880 1.09447 1.26358 1.31928 1.40761 1.44127 1.78070 2.21701 2.22217 2.84155 2.84947 3.47271 3.58951 3.69581 3.82142 3.85352 3.98601 4.01691 4.08709 4.20805 4.24186 4.32932 4.35031 4.39492 4.43166 4.57471 4.58897 4.74703 4.75490 4.80950 4.84995 4.87000 4.93193 4.99815 5.01308 5.05541 5.07012 5.07368 5.22004 5.23274 5.29531 5.31807 5.36607 5.38347 5.39696 5.48024 5.59079 5.63423 5.93929 6.11709 6.33477 6.51746 6.76504 7.03580 7.12537 8.68678 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.002714 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.073557 B =10314.941687 C =10984.904371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.205 3.795 4 H 0.034 0.966 5 C -0.551 4.551 6 H 0.042 0.958 7 C 0.039 3.961 8 N -0.920 5.920 9 Si 0.919 3.081 10 H -0.274 1.274 11 H -0.269 1.269 12 H -0.232 1.232 13 O -0.347 6.347 14 C 0.457 3.543 15 O -0.524 6.524 16 C 0.164 3.836 17 H 0.113 0.887 18 N -0.701 5.701 19 C 0.564 3.436 20 O -0.558 6.558 21 C -0.160 4.160 22 C -0.067 4.067 23 C -0.133 4.133 24 C -0.059 4.059 25 C -0.118 4.118 26 C -0.132 4.132 27 C -0.084 4.084 28 C -0.098 4.098 29 C -0.126 4.126 30 C -0.147 4.147 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.275 0.725 37 H 0.414 0.586 38 H 0.130 0.870 39 H 0.151 0.849 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.151 0.849 44 H 0.135 0.865 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.071 0.929 49 H 0.046 0.954 50 H 0.080 0.920 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.853 10.706 8.417 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.151 3.849 4 H 0.052 0.948 5 C -0.589 4.589 6 H 0.060 0.940 7 C -0.162 4.162 8 N -0.557 5.557 9 Si 0.741 3.259 10 H -0.199 1.199 11 H -0.194 1.194 12 H -0.155 1.155 13 O -0.262 6.262 14 C 0.300 3.700 15 O -0.414 6.414 16 C 0.057 3.943 17 H 0.130 0.870 18 N -0.356 5.356 19 C 0.354 3.646 20 O -0.438 6.438 21 C -0.163 4.163 22 C -0.086 4.086 23 C -0.150 4.150 24 C -0.059 4.059 25 C -0.175 4.175 26 C -0.150 4.150 27 C -0.103 4.103 28 C -0.118 4.118 29 C -0.184 4.184 30 C -0.205 4.205 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.148 0.852 39 H 0.169 0.831 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.169 0.831 44 H 0.153 0.847 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.065 0.935 50 H 0.099 0.901 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.305 10.826 8.591 28.833 hybrid contribution 0.558 -0.323 -1.294 1.445 sum -24.747 10.503 7.297 27.857 Atomic orbital electron populations 1.21854 0.94675 1.01941 1.01506 1.22170 0.96179 0.96792 1.02193 1.20684 0.94028 0.90339 0.79870 0.94849 1.20940 0.90057 1.44599 1.03258 0.93956 1.25498 0.96178 0.93185 1.01386 1.70049 1.14377 1.42203 1.29104 0.86252 0.81462 0.78740 0.79421 1.19920 1.19413 1.15518 1.86484 1.40168 1.59186 1.40400 1.23774 0.79541 0.77369 0.89350 1.90564 1.51060 1.62369 1.37379 1.20424 0.90019 0.93495 0.90362 0.86953 1.45603 1.23132 1.25116 1.41738 1.18539 0.86296 0.79546 0.80265 1.90769 1.48727 1.69978 1.34319 1.19800 0.95655 0.98615 1.02240 1.21355 0.97260 0.92587 0.97372 1.21311 0.93588 1.00900 0.99231 1.20566 0.96812 0.94771 0.93773 1.20942 0.93236 0.99782 1.03495 1.21317 0.97610 0.95270 1.00805 1.21516 0.93660 0.99725 0.95379 1.21507 1.00936 0.96069 0.93268 1.21760 1.01878 0.99154 0.95571 1.21899 0.97047 0.99147 1.02367 0.90992 0.92956 0.93465 0.91726 0.91707 0.91591 0.74674 0.85233 0.83119 0.89862 0.90100 0.90100 0.83096 0.84743 0.89248 0.93046 0.93065 0.91050 0.93542 0.90144 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 8.82 71.98 0.63 -4.32 16 2 C -0.14 -5.75 4.93 30.59 0.15 -5.60 16 3 C 0.20 9.96 1.74 29.85 0.05 10.01 16 4 H 0.03 1.69 5.65 -2.39 -0.01 1.67 16 5 C -0.55 -31.91 9.32 25.60 0.24 -31.67 16 6 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 7 C 0.04 2.20 5.29 84.66 0.45 2.65 16 8 N -0.92 -55.68 13.96 21.45 0.30 -55.39 16 9 Si 0.92 42.44 25.81 68.60 1.77 44.21 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.23 -9.93 5.64 99.48 0.56 -9.37 16 13 O -0.35 -15.39 9.71 -51.42 -0.50 -15.89 16 14 C 0.46 17.02 5.09 71.23 0.36 17.38 16 15 O -0.52 -20.19 13.33 21.96 0.29 -19.90 16 16 C 0.16 5.00 2.48 44.25 0.11 5.11 16 17 H 0.11 3.72 7.58 -2.39 -0.02 3.71 16 18 N -0.70 -18.49 3.84 -448.98 -1.73 -20.22 16 19 C 0.56 15.24 6.28 86.79 0.55 15.79 16 20 O -0.56 -17.95 13.47 -3.88 -0.05 -18.00 16 21 C -0.16 -3.56 5.87 -20.09 -0.12 -3.67 16 22 C -0.07 -1.33 9.60 22.53 0.22 -1.12 16 23 C -0.13 -1.93 9.68 22.23 0.22 -1.72 16 24 C -0.06 -0.76 5.89 -19.81 -0.12 -0.87 16 25 C -0.12 -0.79 10.00 71.24 0.71 -0.08 16 26 C -0.13 -1.85 9.68 22.23 0.22 -1.64 16 27 C -0.08 -1.51 9.54 22.53 0.21 -1.29 16 28 C -0.10 -2.56 2.74 -10.79 -0.03 -2.59 16 29 C -0.13 -3.07 7.77 71.98 0.56 -2.51 16 30 C -0.15 -3.33 8.79 71.98 0.63 -2.70 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.76 4.12 -2.39 -0.01 1.75 16 33 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 2.80 5.19 -2.39 -0.01 2.79 16 35 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 37 H 0.41 9.91 5.73 -92.71 -0.53 9.38 16 38 H 0.13 2.68 7.65 -2.91 -0.02 2.66 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 42 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 43 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 44 H 0.13 2.13 6.41 -2.91 -0.02 2.11 16 45 H 0.09 2.47 8.12 -2.39 -0.02 2.45 16 46 H 0.05 1.39 7.76 -2.39 -0.02 1.37 16 47 H 0.05 1.30 5.68 -2.38 -0.01 1.28 16 48 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.05 1.18 5.65 -2.39 -0.01 1.16 16 50 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 51 H 0.06 1.33 7.24 -2.39 -0.02 1.31 16 Total: -1.00 -69.61 397.74 5.40 -64.21 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.27 Total: 29.83 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.04 Total: -8.86 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.43 Total: -75.60 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.26 Total: -53.79 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.77 Total: 44.21 kcal Total: -69.61 5.40 -64.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188085286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.900 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds