Wall clock time and date at job start Wed Apr 1 2020 05:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47062 * 2 1 4 4 O 1.42899 * 109.47238 * 120.00307 * 2 1 3 5 5 C 1.35895 * 116.99830 * 275.32342 * 4 2 1 6 6 C 1.38745 * 120.06008 * 5.08591 * 5 4 2 7 7 C 1.38128 * 119.94617 * 179.69968 * 6 5 4 8 8 C 1.38283 * 120.05361 * 0.59819 * 7 6 5 9 9 C 1.38244 * 120.11097 * 359.67526 * 8 7 6 10 10 C 1.50699 * 119.96824 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47325 * 239.97814 * 10 9 8 12 12 C 1.52999 * 109.47334 * 359.97438 * 10 9 8 13 13 C 1.53004 * 109.46874 * 119.98067 * 10 9 8 14 14 C 1.38164 * 120.05754 * 0.02562 * 9 8 7 15 15 C 1.50702 * 109.46720 * 240.00554 * 2 1 3 16 16 O 1.21289 * 119.99451 * 244.99640 * 15 2 1 17 17 N 1.34772 * 120.00430 * 64.99953 * 15 2 1 18 18 C 1.47068 * 136.05692 * 179.97438 * 17 15 2 19 19 C 1.53504 * 88.04639 * 207.12199 * 18 17 15 20 20 O 1.42901 * 114.19916 * 87.54949 * 19 18 17 21 21 C 1.50695 * 114.20565 * 220.37457 * 19 18 17 22 22 H 1.07994 * 120.00258 * 0.02562 * 21 19 18 23 23 C 1.37883 * 119.99767 * 180.02562 * 21 19 18 24 24 N 1.31512 * 119.99990 * 180.02562 * 23 21 19 25 25 Si 1.86793 * 119.99964 * 359.97438 * 23 21 19 26 26 H 1.48497 * 109.47285 * 90.00458 * 25 23 21 27 27 H 1.48503 * 109.47330 * 210.00655 * 25 23 21 28 28 H 1.48506 * 109.47284 * 330.00516 * 25 23 21 29 29 C 1.47071 * 136.05567 * 0.04780 * 17 15 2 30 30 H 1.09002 * 109.46643 * 299.99375 * 1 2 3 31 31 H 1.08995 * 109.47123 * 59.99639 * 1 2 3 32 32 H 1.09001 * 109.47036 * 179.97438 * 1 2 3 33 33 H 1.08002 * 120.02789 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.97207 * 180.30031 * 7 6 5 35 35 H 1.07998 * 119.94209 * 179.70761 * 8 7 6 36 36 H 1.09001 * 109.46869 * 60.00110 * 11 10 9 37 37 H 1.09002 * 109.47704 * 180.02562 * 11 10 9 38 38 H 1.09006 * 109.47350 * 300.00811 * 11 10 9 39 39 H 1.08991 * 109.47187 * 59.99953 * 12 10 9 40 40 H 1.09002 * 109.46987 * 180.02562 * 12 10 9 41 41 H 1.08993 * 109.47033 * 299.99582 * 12 10 9 42 42 H 1.09004 * 109.47129 * 60.00140 * 13 10 9 43 43 H 1.08998 * 109.47117 * 179.97438 * 13 10 9 44 44 H 1.09001 * 109.47420 * 299.99986 * 13 10 9 45 45 H 1.07998 * 120.02948 * 180.02562 * 14 9 8 46 46 H 1.08997 * 113.46884 * 321.93517 * 18 17 15 47 47 H 1.09002 * 113.46876 * 92.31896 * 18 17 15 48 48 H 0.96704 * 113.99177 * 179.97438 * 20 19 18 49 49 H 0.96996 * 120.00051 * 179.97438 * 24 23 21 50 50 H 1.09002 * 113.46499 * 267.62761 * 29 17 15 51 51 H 1.08993 * 113.46651 * 38.00564 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1061 0.0608 2.3057 6 6 1.6544 1.3725 2.3286 7 6 1.7513 2.1149 3.4893 8 6 2.3092 1.5559 4.6245 9 6 2.7652 0.2510 4.6026 10 6 3.3721 -0.3551 5.8417 11 6 4.8127 -0.7791 5.5490 12 6 3.3638 0.6771 6.9710 13 6 2.5560 -1.5788 6.2630 14 6 2.6649 -0.4978 3.4458 15 6 2.0323 -0.7103 -1.2306 16 8 2.6530 -1.7466 -1.1216 17 7 1.7918 -0.1941 -2.4521 18 6 2.1012 -0.5694 -3.8400 19 6 2.0386 0.9211 -4.2016 20 8 3.2754 1.6170 -4.0339 21 6 1.3624 1.2099 -5.5170 22 1 0.9729 0.3984 -6.1136 23 6 1.2410 2.5104 -5.9588 24 7 0.6505 2.7625 -7.1065 25 14 1.9141 3.9142 -4.9265 26 1 3.3243 4.1783 -5.3094 27 1 1.1009 5.1346 -5.1601 28 1 1.8521 3.5457 -3.4892 29 6 1.1057 0.9933 -2.9835 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2234 1.8112 1.4408 34 1 1.3954 3.1344 3.5090 35 1 2.3883 2.1396 5.5297 36 1 5.3941 0.0927 5.2488 37 1 5.2516 -1.2180 6.4450 38 1 4.8187 -1.5144 4.7443 39 1 2.3376 0.9792 7.1796 40 1 3.8032 0.2387 7.8671 41 1 3.9453 1.5487 6.6708 42 1 2.5620 -2.3142 5.4584 43 1 2.9952 -2.0175 7.1589 44 1 1.5296 -1.2768 6.4716 45 1 3.0209 -1.5173 3.4294 46 1 3.0933 -1.0042 -3.9612 47 1 1.3198 -1.1640 -4.3133 48 1 3.2327 2.5556 -4.2629 49 1 0.5648 3.6774 -7.4172 50 1 0.0586 0.8160 -3.2288 51 1 1.2507 1.8866 -2.3761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188677916.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:31 Heat of formation + Delta-G solvation = -67.576903 kcal Electronic energy + Delta-G solvation = -30987.337585 eV Core-core repulsion = 26853.267699 eV Total energy + Delta-G solvation = -4134.069886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96933 -41.25809 -39.95438 -38.88589 -36.65434 -36.41719 -34.56261 -33.56457 -31.42226 -30.58404 -30.40462 -28.12764 -28.10847 -27.57764 -27.01763 -25.50594 -24.03999 -23.06377 -22.05187 -20.61922 -20.10551 -19.38603 -18.89372 -18.33798 -17.92075 -17.60007 -17.01915 -16.76165 -16.27585 -16.11199 -15.78200 -15.61146 -15.38122 -15.12372 -14.95252 -14.86265 -14.54835 -14.43765 -14.33161 -14.13042 -14.00609 -13.60345 -13.49018 -13.22605 -12.99731 -12.94120 -12.89135 -12.68181 -12.55545 -12.50653 -12.46023 -12.37589 -12.11978 -11.92716 -11.78131 -11.63171 -11.47347 -11.35154 -11.09757 -10.87181 -10.50780 -9.80070 -9.77427 -9.20039 -8.43059 -6.55610 0.33698 0.45411 1.24739 1.27458 1.31203 1.38126 1.41099 2.16757 2.33695 2.74167 2.76776 3.10980 3.28084 3.57945 3.63707 3.75972 3.76318 3.83580 3.95998 4.10992 4.12913 4.28102 4.33658 4.37329 4.39006 4.40912 4.48053 4.56271 4.59873 4.63605 4.65943 4.74968 4.76619 4.81489 4.89204 4.90049 4.98441 5.01582 5.02303 5.03739 5.15756 5.24831 5.25046 5.33781 5.36309 5.41378 5.52677 5.68971 5.81976 6.01745 6.34169 6.53143 6.60441 6.65652 6.91759 7.12271 8.71993 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.002375 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.416414 B =11788.771709 C =12407.528877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 H 0.110 0.890 4 O -0.313 6.313 5 C 0.108 3.892 6 C -0.223 4.223 7 C -0.076 4.076 8 C -0.160 4.160 9 C -0.034 4.034 10 C -0.030 4.030 11 C -0.140 4.140 12 C -0.140 4.140 13 C -0.138 4.138 14 C -0.163 4.163 15 C 0.537 3.463 16 O -0.580 6.580 17 N -0.632 5.632 18 C 0.120 3.880 19 C 0.184 3.816 20 O -0.559 6.559 21 C -0.538 4.538 22 H 0.061 0.939 23 C 0.029 3.971 24 N -0.920 5.920 25 Si 0.916 3.084 26 H -0.260 1.260 27 H -0.280 1.280 28 H -0.229 1.229 29 C 0.072 3.928 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.139 0.861 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.118 0.882 46 H 0.062 0.938 47 H 0.109 0.891 48 H 0.356 0.644 49 H 0.274 0.726 50 H 0.116 0.884 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 1.834 27.865 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 H 0.127 0.873 4 O -0.227 6.227 5 C 0.064 3.936 6 C -0.242 4.242 7 C -0.094 4.094 8 C -0.178 4.178 9 C -0.034 4.034 10 C -0.030 4.030 11 C -0.197 4.197 12 C -0.197 4.197 13 C -0.195 4.195 14 C -0.182 4.182 15 C 0.327 3.673 16 O -0.460 6.460 17 N -0.366 5.366 18 C -0.002 4.002 19 C 0.143 3.857 20 O -0.372 6.372 21 C -0.576 4.576 22 H 0.079 0.921 23 C -0.173 4.173 24 N -0.557 5.557 25 Si 0.741 3.259 26 H -0.186 1.186 27 H -0.207 1.207 28 H -0.153 1.153 29 C -0.050 4.050 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.136 0.864 46 H 0.081 0.919 47 H 0.127 0.873 48 H 0.209 0.791 49 H 0.084 0.916 50 H 0.134 0.866 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.647 0.540 28.161 28.173 hybrid contribution 0.047 0.922 -0.982 1.348 sum 0.695 1.462 27.178 27.227 Atomic orbital electron populations 1.22303 0.90223 1.04332 1.05469 1.22078 0.97309 0.96529 0.81958 0.87262 1.86144 1.81710 1.38408 1.16454 1.19329 0.96757 0.91395 0.86138 1.21504 1.07570 0.93715 1.01407 1.21296 0.96275 1.00353 0.91471 1.21421 1.01449 0.95082 0.99813 1.19864 0.95973 0.93855 0.93718 1.19590 0.95237 0.96309 0.91909 1.21907 0.94624 1.01159 1.02021 1.21945 1.02627 0.98136 0.97019 1.21890 0.99829 0.96242 1.01564 1.20330 1.04979 1.01358 0.91514 1.20168 0.79473 0.84338 0.83347 1.90666 1.43270 1.25712 1.86360 1.49529 1.55092 1.27736 1.04231 1.23211 1.01469 0.97168 0.78341 1.20280 0.82149 0.90685 0.92568 1.86486 1.35361 1.25155 1.90164 1.21188 1.38201 0.94250 1.03956 0.92104 1.25804 0.94270 1.01384 0.95802 1.69979 1.42692 1.21871 1.21193 0.86361 0.79124 0.79238 0.81134 1.18643 1.20682 1.15255 1.24441 0.99481 0.87048 0.94069 0.88573 0.88825 0.91570 0.84383 0.83018 0.83034 0.92795 0.90657 0.93607 0.91584 0.91119 0.91881 0.93493 0.90748 0.92424 0.86354 0.91906 0.87310 0.79058 0.91622 0.86643 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 9.09 71.98 0.65 -3.20 16 2 C 0.08 2.43 2.48 29.85 0.07 2.50 16 3 H 0.11 2.92 6.31 -2.39 -0.02 2.91 16 4 O -0.31 -10.42 9.34 -73.37 -0.69 -11.10 16 5 C 0.11 2.99 6.60 22.51 0.15 3.14 16 6 C -0.22 -4.94 8.23 22.36 0.18 -4.75 16 7 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 8 C -0.16 -2.68 8.97 22.28 0.20 -2.48 16 9 C -0.03 -0.66 4.76 -19.88 -0.09 -0.75 16 10 C -0.03 -0.45 0.85 -52.93 -0.05 -0.49 16 11 C -0.14 -2.10 8.29 71.98 0.60 -1.51 16 12 C -0.14 -1.42 7.13 71.98 0.51 -0.91 16 13 C -0.14 -1.93 8.29 71.98 0.60 -1.33 16 14 C -0.16 -4.11 8.65 22.37 0.19 -3.91 16 15 C 0.54 20.86 7.43 87.66 0.65 21.51 16 16 O -0.58 -27.40 17.28 15.93 0.28 -27.12 16 17 N -0.63 -23.82 3.66 -857.97 -3.14 -26.96 16 18 C 0.12 4.87 8.03 83.19 0.67 5.54 16 19 C 0.18 7.88 1.10 -11.17 -0.01 7.87 16 20 O -0.56 -24.79 13.32 -148.98 -1.98 -26.78 16 21 C -0.54 -26.84 9.27 25.60 0.24 -26.61 16 22 H 0.06 3.35 8.06 -2.91 -0.02 3.32 16 23 C 0.03 1.46 5.47 84.66 0.46 1.93 16 24 N -0.92 -50.66 13.96 21.45 0.30 -50.36 16 25 Si 0.92 36.19 24.42 68.60 1.68 37.86 16 26 H -0.26 -10.05 7.06 99.48 0.70 -9.35 16 27 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 28 H -0.23 -7.86 5.49 99.48 0.55 -7.32 16 29 C 0.07 2.51 5.98 83.22 0.50 3.01 16 30 H 0.10 1.80 6.91 -2.39 -0.02 1.78 16 31 H 0.09 1.96 6.84 -2.39 -0.02 1.94 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.14 2.68 5.43 -2.91 -0.02 2.66 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.15 1.74 5.89 -2.91 -0.02 1.72 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.04 0.81 7.39 -2.38 -0.02 0.79 16 39 H 0.07 0.60 7.51 -2.39 -0.02 0.58 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.61 7.51 -2.39 -0.02 0.60 16 42 H 0.05 0.77 7.39 -2.38 -0.02 0.75 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.12 3.10 7.10 -2.91 -0.02 3.08 16 46 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.11 4.08 8.10 -2.39 -0.02 4.06 16 48 H 0.36 14.67 3.16 -74.05 -0.23 14.44 16 49 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 50 H 0.12 3.66 8.10 -2.39 -0.02 3.64 16 51 H 0.09 2.68 7.14 -2.39 -0.02 2.66 16 Total: -1.00 -67.68 398.49 2.72 -64.96 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: 0.54 Total: 41.07 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 5.75 Total: -1.56 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -2.84 Total: -77.33 kcal Atomic # 8 Polarization: -62.61 SS G_CDS: -2.39 Total: -65.00 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 1.68 Total: 37.86 kcal Total: -67.68 2.72 -64.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188677916.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.620 kcal (2) G-P(sol) polarization free energy of solvation -67.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds