Wall clock time and date at job start Wed Apr 1 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46849 * 2 1 4 4 C 1.42906 * 113.99685 * 179.97438 * 3 2 1 5 5 H 1.08995 * 112.84593 * 21.69245 * 4 3 2 6 6 C 1.53786 * 113.61224 * 250.49742 * 4 3 2 7 7 C 1.53788 * 87.07520 * 219.93927 * 6 4 3 8 8 C 1.52996 * 113.61052 * 270.79878 * 7 6 4 9 9 O 1.42900 * 109.47305 * 284.01197 * 8 7 6 10 10 N 1.46501 * 113.61383 * 139.98480 * 7 6 4 11 11 C 1.34778 * 120.00109 * 185.56560 * 10 7 6 12 12 O 1.21550 * 119.99527 * 354.95404 * 11 10 7 13 13 C 1.47880 * 120.00059 * 174.95476 * 11 10 7 14 14 C 1.39927 * 120.02386 * 359.97438 * 13 11 10 15 15 C 1.38330 * 120.35477 * 180.30095 * 14 13 11 16 16 C 1.37755 * 120.41081 * 359.44497 * 15 14 13 17 17 C 1.40744 * 120.04206 * 0.55584 * 16 15 14 18 18 C 1.41434 * 120.17820 * 179.74004 * 17 16 15 19 19 H 1.07999 * 119.99766 * 28.16850 * 18 17 16 20 20 C 1.39933 * 120.00177 * 208.15723 * 18 17 16 21 21 N 1.30833 * 119.99851 * 11.09358 * 20 18 17 22 22 Si 1.86801 * 120.00133 * 191.08974 * 20 18 17 23 23 H 1.48500 * 109.47065 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47387 * 120.00292 * 22 20 18 25 25 H 1.48508 * 109.47179 * 240.00243 * 22 20 18 26 26 C 1.38993 * 120.02533 * 180.02562 * 13 11 10 27 27 C 1.53773 * 87.08407 * 25.43476 * 7 6 4 28 28 C 1.52998 * 113.61673 * 89.11731 * 27 7 6 29 29 C 1.53003 * 113.61316 * 220.02009 * 27 7 6 30 30 H 1.09001 * 109.46959 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47245 * 299.99880 * 1 2 3 32 32 H 1.09005 * 109.46837 * 60.00176 * 1 2 3 33 33 H 1.09001 * 109.47245 * 240.00120 * 2 1 3 34 34 H 1.09001 * 109.47299 * 119.99960 * 2 1 3 35 35 H 1.08995 * 113.61228 * 105.39169 * 6 4 3 36 36 H 1.09002 * 113.69254 * 334.49007 * 6 4 3 37 37 H 1.09000 * 109.47692 * 44.01420 * 8 7 6 38 38 H 1.09001 * 109.47395 * 164.01696 * 8 7 6 39 39 H 0.96707 * 114.00345 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99643 * 5.56607 * 10 7 6 41 41 H 1.07997 * 119.81890 * 0.02758 * 14 13 11 42 42 H 1.08004 * 119.79038 * 179.71011 * 15 14 13 43 43 H 1.07997 * 119.97697 * 180.29812 * 16 15 14 44 44 H 0.97005 * 119.99473 * 179.97438 * 21 20 18 45 45 H 1.07993 * 120.20175 * 359.95613 * 26 13 11 46 46 H 1.09000 * 109.47059 * 59.99735 * 28 27 7 47 47 H 1.09003 * 109.47030 * 180.02562 * 28 27 7 48 48 H 1.08996 * 109.47091 * 299.99870 * 28 27 7 49 49 H 1.09007 * 109.47006 * 60.00155 * 29 27 7 50 50 H 1.09001 * 109.47463 * 179.97438 * 29 27 7 51 51 H 1.08994 * 109.47370 * 299.99971 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9266 0.5631 -0.3703 6 6 4.0073 1.9779 1.3290 7 6 4.9929 2.8061 0.4877 8 6 6.2891 2.0642 0.1558 9 8 7.1305 2.0351 1.3104 10 7 5.2272 4.1527 1.0151 11 6 5.9803 5.0274 0.3192 12 8 6.5401 4.6714 -0.6993 13 6 6.1254 6.4201 0.7948 14 6 5.4807 6.8305 1.9669 15 6 5.6067 8.1333 2.4146 16 6 6.3771 9.0384 1.7184 17 6 7.0330 8.6440 0.5373 18 6 7.8204 9.5725 -0.1828 19 1 8.2976 10.3916 0.3346 20 6 7.9812 9.4296 -1.5655 21 7 7.2390 8.5782 -2.2259 22 14 9.2553 10.4546 -2.4684 23 1 9.9590 11.3344 -1.5009 24 1 10.2384 9.5561 -3.1254 25 1 8.5820 11.2879 -3.4968 26 6 6.9014 7.3228 0.0772 27 6 3.9480 2.7593 -0.6395 28 6 2.9410 3.9101 -0.5900 29 6 4.5548 2.5583 -2.0296 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.4874 1.2040 1.9278 36 1 3.3070 2.5843 1.9035 37 1 6.0560 1.0442 -0.1497 38 1 6.8041 2.5779 -0.6561 39 1 7.9719 1.5788 1.1727 40 1 4.8404 4.4147 1.8652 41 1 4.8779 6.1275 2.5226 42 1 5.1013 8.4414 3.3180 43 1 6.4745 10.0525 2.0769 44 1 7.3503 8.4796 -3.1844 45 1 7.4007 7.0104 -0.8280 46 1 3.4696 4.8594 -0.6757 47 1 2.2352 3.8110 -1.4147 48 1 2.4004 3.8794 0.3560 49 1 5.1023 1.6160 -2.0543 50 1 3.7586 2.5350 -2.7737 51 1 5.2356 3.3801 -2.2512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188875144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:28 Heat of formation + Delta-G solvation = -95.034777 kcal Electronic energy + Delta-G solvation = -31997.564301 eV Core-core repulsion = 27862.303753 eV Total energy + Delta-G solvation = -4135.260548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.10006 -38.66153 -37.36145 -36.57578 -35.94180 -33.73472 -32.94127 -31.27610 -30.59687 -29.80567 -29.37643 -28.06771 -26.21370 -25.24757 -23.64300 -23.02660 -22.47526 -21.67182 -20.86982 -19.40524 -18.17711 -17.69813 -17.21884 -17.02023 -16.05349 -15.81358 -15.29636 -15.23381 -14.94985 -14.75974 -14.65136 -14.28052 -13.70776 -13.55436 -13.35663 -13.16825 -13.00592 -12.94534 -12.64896 -12.51081 -12.44046 -12.25081 -12.05675 -11.86384 -11.65518 -11.58088 -11.37255 -11.32751 -11.14042 -11.07126 -10.74712 -10.67722 -10.56332 -10.45974 -10.32748 -10.08068 -9.77173 -9.65153 -9.41265 -9.23346 -8.73508 -8.47694 -7.57507 -7.43593 -6.70737 -4.39186 2.26518 2.84636 3.10103 3.14947 3.16337 3.40138 3.82751 3.93028 3.96450 4.07656 4.32383 4.51782 4.63227 4.72554 4.83832 4.88565 5.04328 5.13083 5.18575 5.31013 5.35989 5.42237 5.48575 5.61701 5.64273 5.67615 5.72343 5.82367 5.88190 5.92709 5.94123 6.04674 6.07723 6.12544 6.19487 6.27545 6.32124 6.53803 6.57791 6.74834 6.99136 7.04311 7.07702 7.13792 7.26882 7.43350 7.72684 7.74212 7.82027 7.97482 8.18684 8.26055 8.55952 8.85998 8.87787 9.07001 10.22900 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.002815 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.616993 B = 9943.593581 C =10204.142451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.071 3.929 5 H 0.086 0.914 6 C -0.153 4.153 7 C 0.172 3.828 8 C 0.081 3.919 9 O -0.564 6.564 10 N -0.709 5.709 11 C 0.573 3.427 12 O -0.544 6.544 13 C -0.129 4.129 14 C -0.210 4.210 15 C -0.102 4.102 16 C -0.207 4.207 17 C 0.096 3.904 18 C -0.461 4.461 19 H 0.079 0.921 20 C 0.071 3.929 21 N -0.792 5.792 22 Si 0.911 3.089 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.086 4.086 27 C -0.072 4.072 28 C -0.111 4.111 29 C -0.143 4.143 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.375 0.625 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.282 0.718 45 H 0.137 0.863 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.050 0.950 50 H 0.054 0.946 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.911 -16.755 2.765 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.013 3.987 5 H 0.104 0.896 6 C -0.191 4.191 7 C 0.084 3.916 8 C 0.002 3.998 9 O -0.369 6.369 10 N -0.362 5.362 11 C 0.364 3.636 12 O -0.422 6.422 13 C -0.133 4.133 14 C -0.230 4.230 15 C -0.121 4.121 16 C -0.227 4.227 17 C 0.094 3.906 18 C -0.491 4.491 19 H 0.097 0.903 20 C -0.147 4.147 21 N -0.417 5.417 22 Si 0.736 3.264 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.106 4.106 27 C -0.074 4.074 28 C -0.168 4.168 29 C -0.200 4.200 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.221 0.779 40 H 0.235 0.765 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.154 0.846 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.200 -16.592 2.034 18.619 hybrid contribution 0.849 -0.056 -0.228 0.881 sum -7.351 -16.648 1.806 18.288 Atomic orbital electron populations 1.21738 0.93882 1.02017 1.03186 1.22493 0.95545 0.84392 0.99788 1.87980 1.20232 1.25644 1.94519 1.23723 0.81205 0.97554 0.96248 0.89604 1.23766 0.97851 1.00020 0.97450 1.21241 0.91956 0.83528 0.94887 1.22368 0.90850 0.97292 0.89244 1.86462 1.32609 1.81202 1.36621 1.45622 1.54310 1.11402 1.24830 1.18706 0.76679 0.85510 0.82733 1.90594 1.47040 1.79103 1.25504 1.19523 1.03872 0.92045 0.97824 1.20394 1.07454 0.96435 0.98725 1.20443 0.99438 0.93669 0.98504 1.21145 1.03158 0.98029 1.00360 1.17631 0.90278 0.91750 0.90962 1.19588 1.26902 1.10431 0.92141 0.90252 1.25930 0.95333 0.95185 0.98223 1.69777 1.32450 1.29800 1.09718 0.86210 0.80705 0.80014 0.79486 1.18481 1.19724 1.19976 1.21695 0.97719 0.91601 0.99559 1.22479 0.94856 0.94933 0.95098 1.21283 0.97076 0.96551 1.01902 1.21846 1.00941 1.02396 0.94849 0.91352 0.91852 0.91845 0.93579 0.93585 0.90389 0.88509 0.94045 0.89981 0.77853 0.76476 0.89271 0.88955 0.88662 0.90726 0.84576 0.91865 0.92419 0.92311 0.93145 0.92704 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.48 6.51 37.16 0.24 0.72 16 3 O -0.37 -4.27 9.45 -35.23 -0.33 -4.60 16 4 C 0.07 0.82 3.35 -25.92 -0.09 0.73 16 5 H 0.09 0.86 7.18 -51.93 -0.37 0.49 16 6 C -0.15 -1.83 6.84 -25.91 -0.18 -2.01 16 7 C 0.17 2.48 0.73 -131.01 -0.10 2.39 16 8 C 0.08 1.15 4.68 37.16 0.17 1.32 16 9 O -0.56 -8.07 13.54 -35.23 -0.48 -8.55 16 10 N -0.71 -12.07 4.16 -47.77 -0.20 -12.27 16 11 C 0.57 12.27 6.85 -12.31 -0.08 12.18 16 12 O -0.54 -12.74 12.88 5.32 0.07 -12.67 16 13 C -0.13 -3.06 5.87 -105.04 -0.62 -3.67 16 14 C -0.21 -4.48 9.55 -38.92 -0.37 -4.85 16 15 C -0.10 -2.21 10.01 -39.72 -0.40 -2.61 16 16 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 17 C 0.10 2.56 5.55 -106.87 -0.59 1.97 16 18 C -0.46 -12.21 9.06 -37.73 -0.34 -12.55 16 19 H 0.08 2.01 7.87 -52.49 -0.41 1.59 16 20 C 0.07 1.80 5.25 -17.34 -0.09 1.71 16 21 N -0.79 -21.05 10.82 55.55 0.60 -20.45 16 22 Si 0.91 19.00 29.57 -169.99 -5.03 13.97 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.09 -2.28 8.21 -38.44 -0.32 -2.60 16 27 C -0.07 -0.99 1.24 -153.70 -0.19 -1.19 16 28 C -0.11 -1.65 7.88 37.16 0.29 -1.36 16 29 C -0.14 -1.99 8.13 37.16 0.30 -1.69 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.10 1.16 7.66 -51.93 -0.40 0.76 16 37 H 0.04 0.47 6.96 -51.93 -0.36 0.11 16 38 H 0.08 1.37 5.74 -51.93 -0.30 1.08 16 39 H 0.38 3.72 9.12 45.56 0.42 4.14 16 40 H 0.40 6.27 6.69 -40.82 -0.27 5.99 16 41 H 0.09 1.60 6.39 -52.49 -0.34 1.27 16 42 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.28 6.88 8.30 -40.82 -0.34 6.55 16 45 H 0.14 3.92 5.76 -52.49 -0.30 3.62 16 46 H 0.06 1.11 7.18 -51.93 -0.37 0.74 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.83 7.19 -51.93 -0.37 0.46 16 49 H 0.05 0.60 6.99 -51.93 -0.36 0.23 16 50 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.08 1.39 6.78 -51.93 -0.35 1.04 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -30.50 402.50 -8.81 -39.31 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -7.16 Total: 16.79 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -2.35 Total: -17.60 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.40 Total: -32.72 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.74 Total: -25.82 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.50 -8.81 -39.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188875144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.728 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds