Wall clock time and date at job start Wed Apr 1 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46849 * 2 1 4 4 C 1.42906 * 113.99685 * 179.97438 * 3 2 1 5 5 H 1.08995 * 112.84593 * 21.69245 * 4 3 2 6 6 C 1.53786 * 113.61224 * 250.49742 * 4 3 2 7 7 C 1.53788 * 87.07520 * 219.93927 * 6 4 3 8 8 C 1.52996 * 113.61052 * 270.79878 * 7 6 4 9 9 O 1.42900 * 109.47305 * 284.01197 * 8 7 6 10 10 N 1.46501 * 113.61383 * 139.98480 * 7 6 4 11 11 C 1.34778 * 120.00109 * 185.56560 * 10 7 6 12 12 O 1.21550 * 119.99527 * 354.95404 * 11 10 7 13 13 C 1.47880 * 120.00059 * 174.95476 * 11 10 7 14 14 C 1.39927 * 120.02386 * 359.97438 * 13 11 10 15 15 C 1.38330 * 120.35477 * 180.30095 * 14 13 11 16 16 C 1.37755 * 120.41081 * 359.44497 * 15 14 13 17 17 C 1.40744 * 120.04206 * 0.55584 * 16 15 14 18 18 C 1.41434 * 120.17820 * 179.74004 * 17 16 15 19 19 H 1.07999 * 119.99766 * 28.16850 * 18 17 16 20 20 C 1.39933 * 120.00177 * 208.15723 * 18 17 16 21 21 N 1.30833 * 119.99851 * 11.09358 * 20 18 17 22 22 Si 1.86801 * 120.00133 * 191.08974 * 20 18 17 23 23 H 1.48500 * 109.47065 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47387 * 120.00292 * 22 20 18 25 25 H 1.48508 * 109.47179 * 240.00243 * 22 20 18 26 26 C 1.38993 * 120.02533 * 180.02562 * 13 11 10 27 27 C 1.53773 * 87.08407 * 25.43476 * 7 6 4 28 28 C 1.52998 * 113.61673 * 89.11731 * 27 7 6 29 29 C 1.53003 * 113.61316 * 220.02009 * 27 7 6 30 30 H 1.09001 * 109.46959 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47245 * 299.99880 * 1 2 3 32 32 H 1.09005 * 109.46837 * 60.00176 * 1 2 3 33 33 H 1.09001 * 109.47245 * 240.00120 * 2 1 3 34 34 H 1.09001 * 109.47299 * 119.99960 * 2 1 3 35 35 H 1.08995 * 113.61228 * 105.39169 * 6 4 3 36 36 H 1.09002 * 113.69254 * 334.49007 * 6 4 3 37 37 H 1.09000 * 109.47692 * 44.01420 * 8 7 6 38 38 H 1.09001 * 109.47395 * 164.01696 * 8 7 6 39 39 H 0.96707 * 114.00345 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99643 * 5.56607 * 10 7 6 41 41 H 1.07997 * 119.81890 * 0.02758 * 14 13 11 42 42 H 1.08004 * 119.79038 * 179.71011 * 15 14 13 43 43 H 1.07997 * 119.97697 * 180.29812 * 16 15 14 44 44 H 0.97005 * 119.99473 * 179.97438 * 21 20 18 45 45 H 1.07993 * 120.20175 * 359.95613 * 26 13 11 46 46 H 1.09000 * 109.47059 * 59.99735 * 28 27 7 47 47 H 1.09003 * 109.47030 * 180.02562 * 28 27 7 48 48 H 1.08996 * 109.47091 * 299.99870 * 28 27 7 49 49 H 1.09007 * 109.47006 * 60.00155 * 29 27 7 50 50 H 1.09001 * 109.47463 * 179.97438 * 29 27 7 51 51 H 1.08994 * 109.47370 * 299.99971 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9266 0.5631 -0.3703 6 6 4.0073 1.9779 1.3290 7 6 4.9929 2.8061 0.4877 8 6 6.2891 2.0642 0.1558 9 8 7.1305 2.0351 1.3104 10 7 5.2272 4.1527 1.0151 11 6 5.9803 5.0274 0.3192 12 8 6.5401 4.6714 -0.6993 13 6 6.1254 6.4201 0.7948 14 6 5.4807 6.8305 1.9669 15 6 5.6067 8.1333 2.4146 16 6 6.3771 9.0384 1.7184 17 6 7.0330 8.6440 0.5373 18 6 7.8204 9.5725 -0.1828 19 1 8.2976 10.3916 0.3346 20 6 7.9812 9.4296 -1.5655 21 7 7.2390 8.5782 -2.2259 22 14 9.2553 10.4546 -2.4684 23 1 9.9590 11.3344 -1.5009 24 1 10.2384 9.5561 -3.1254 25 1 8.5820 11.2879 -3.4968 26 6 6.9014 7.3228 0.0772 27 6 3.9480 2.7593 -0.6395 28 6 2.9410 3.9101 -0.5900 29 6 4.5548 2.5583 -2.0296 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.4874 1.2040 1.9278 36 1 3.3070 2.5843 1.9035 37 1 6.0560 1.0442 -0.1497 38 1 6.8041 2.5779 -0.6561 39 1 7.9719 1.5788 1.1727 40 1 4.8404 4.4147 1.8652 41 1 4.8779 6.1275 2.5226 42 1 5.1013 8.4414 3.3180 43 1 6.4745 10.0525 2.0769 44 1 7.3503 8.4796 -3.1844 45 1 7.4007 7.0104 -0.8280 46 1 3.4696 4.8594 -0.6757 47 1 2.2352 3.8110 -1.4147 48 1 2.4004 3.8794 0.3560 49 1 5.1023 1.6160 -2.0543 50 1 3.7586 2.5350 -2.7737 51 1 5.2356 3.3801 -2.2512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188875144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:27 Heat of formation + Delta-G solvation = -115.416602 kcal Electronic energy + Delta-G solvation = -31998.448123 eV Core-core repulsion = 27862.303753 eV Total energy + Delta-G solvation = -4136.144371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.25345 -40.21428 -38.75806 -37.93284 -36.98000 -35.59924 -34.43449 -32.05549 -31.99534 -31.31466 -31.15963 -29.19166 -27.47432 -27.05999 -24.98693 -23.90752 -23.42695 -23.04155 -22.66287 -21.04778 -19.55260 -19.29469 -18.35798 -18.02037 -17.63798 -16.99413 -16.60296 -16.46450 -16.43456 -16.02705 -15.98549 -15.68685 -15.14885 -15.04026 -14.71663 -14.45784 -14.31459 -14.24328 -14.06971 -13.82138 -13.45786 -13.38183 -13.19704 -13.09396 -12.98507 -12.93046 -12.80421 -12.63373 -12.51471 -12.22945 -12.17703 -12.14444 -11.86220 -11.82832 -11.52048 -11.50273 -11.36311 -11.14723 -11.10195 -10.32652 -10.25096 -9.91470 -9.42193 -9.33802 -8.59884 -6.39098 0.43283 1.01962 1.36163 1.45973 1.51980 2.17270 2.21525 2.23353 2.82428 2.84898 3.01277 3.29525 3.57440 3.61426 3.72693 3.94134 4.06132 4.18967 4.26020 4.26590 4.32955 4.40176 4.43440 4.46517 4.56206 4.58515 4.61997 4.72627 4.75460 4.85525 4.88730 4.91314 4.91555 5.01346 5.03856 5.08569 5.10652 5.12711 5.21326 5.31909 5.34341 5.34634 5.41765 5.54379 5.67731 5.88392 5.94499 6.07798 6.30430 6.36102 6.55663 6.76437 6.83766 6.90460 6.96124 7.45822 8.35506 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.002815 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.616993 B = 9943.593581 C =10204.142451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.382 6.382 4 C 0.088 3.912 5 H 0.109 0.891 6 C -0.140 4.140 7 C 0.155 3.845 8 C 0.084 3.916 9 O -0.580 6.580 10 N -0.692 5.692 11 C 0.569 3.431 12 O -0.572 6.572 13 C -0.140 4.140 14 C -0.194 4.194 15 C -0.100 4.100 16 C -0.214 4.214 17 C 0.064 3.936 18 C -0.497 4.497 19 H 0.081 0.919 20 C 0.026 3.974 21 N -0.832 5.832 22 Si 0.985 3.015 23 H -0.253 1.253 24 H -0.270 1.270 25 H -0.265 1.265 26 C -0.122 4.122 27 C -0.082 4.082 28 C -0.104 4.104 29 C -0.139 4.139 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.393 0.607 40 H 0.407 0.593 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.108 0.892 44 H 0.284 0.716 45 H 0.102 0.898 46 H 0.026 0.974 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 -18.908 4.595 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.301 6.301 4 C 0.029 3.971 5 H 0.127 0.873 6 C -0.178 4.178 7 C 0.069 3.931 8 C 0.006 3.994 9 O -0.388 6.388 10 N -0.343 5.343 11 C 0.359 3.641 12 O -0.452 6.452 13 C -0.143 4.143 14 C -0.214 4.214 15 C -0.118 4.118 16 C -0.234 4.234 17 C 0.062 3.938 18 C -0.527 4.527 19 H 0.099 0.901 20 C -0.188 4.188 21 N -0.458 5.458 22 Si 0.806 3.194 23 H -0.176 1.176 24 H -0.195 1.195 25 H -0.190 1.190 26 C -0.142 4.142 27 C -0.083 4.083 28 C -0.161 4.161 29 C -0.196 4.196 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.242 0.758 40 H 0.244 0.756 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.126 0.874 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.045 0.955 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.606 -18.774 3.903 21.447 hybrid contribution 1.144 0.495 -0.678 1.419 sum -8.462 -18.280 3.225 20.400 Atomic orbital electron populations 1.21759 0.93246 1.03205 1.02503 1.22729 0.96127 0.83115 1.00956 1.87963 1.19951 1.27704 1.94524 1.23563 0.81694 0.96746 0.95054 0.87311 1.23722 0.96745 0.99683 0.97621 1.21636 0.92965 0.82283 0.96260 1.22289 0.90284 0.98653 0.88218 1.86402 1.33840 1.81850 1.36666 1.45458 1.52479 1.12008 1.24366 1.18496 0.77380 0.85429 0.82776 1.90593 1.48433 1.79446 1.26767 1.19894 1.03072 0.93087 0.98284 1.20863 1.05893 0.97249 0.97412 1.20910 0.98331 0.93154 0.99402 1.21429 1.03059 0.99292 0.99619 1.17990 0.91451 0.91968 0.92440 1.19851 1.28507 1.11170 0.93158 0.90081 1.26833 0.96963 0.96231 0.98737 1.69895 1.34260 1.31699 1.09984 0.85117 0.77828 0.78316 0.78188 1.17592 1.19500 1.18998 1.21483 1.00180 0.92751 0.99810 1.22527 0.94675 0.96258 0.94858 1.21184 0.97098 0.95359 1.02478 1.21778 1.00513 1.01853 0.95429 0.89264 0.92373 0.92690 0.92521 0.92227 0.88684 0.88270 0.90456 0.93369 0.75836 0.75609 0.85171 0.84594 0.87432 0.90571 0.87963 0.95497 0.92136 0.91428 0.90948 0.92032 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.66 6.51 71.98 0.47 1.12 16 3 O -0.38 -7.75 9.45 -148.98 -1.41 -9.16 16 4 C 0.09 1.74 3.35 31.12 0.10 1.84 16 5 H 0.11 1.68 7.18 -2.39 -0.02 1.66 16 6 C -0.14 -2.87 6.84 31.12 0.21 -2.66 16 7 C 0.16 4.25 0.73 4.13 0.00 4.26 16 8 C 0.08 2.26 4.68 71.98 0.34 2.60 16 9 O -0.58 -15.62 13.54 -148.98 -2.02 -17.64 16 10 N -0.69 -23.04 4.16 -423.34 -1.76 -24.80 16 11 C 0.57 25.12 6.85 86.80 0.59 25.71 16 12 O -0.57 -28.42 12.88 -3.87 -0.05 -28.47 16 13 C -0.14 -6.80 5.87 -20.13 -0.12 -6.92 16 14 C -0.19 -8.01 9.55 22.70 0.22 -7.79 16 15 C -0.10 -4.13 10.01 22.18 0.22 -3.91 16 16 C -0.21 -10.32 9.78 22.77 0.22 -10.10 16 17 C 0.06 3.55 5.55 -21.32 -0.12 3.43 16 18 C -0.50 -27.66 9.06 23.47 0.21 -27.45 16 19 H 0.08 4.28 7.87 -2.91 -0.02 4.26 16 20 C 0.03 1.37 5.25 85.25 0.45 1.82 16 21 N -0.83 -47.20 10.82 21.82 0.24 -46.96 16 22 Si 0.98 40.53 29.57 68.60 2.03 42.56 16 23 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 26 C -0.12 -6.88 8.21 23.01 0.19 -6.70 16 27 C -0.08 -2.16 1.24 -51.66 -0.06 -2.22 16 28 C -0.10 -3.06 7.88 71.98 0.57 -2.50 16 29 C -0.14 -3.83 8.13 71.98 0.58 -3.25 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.10 2.02 7.66 -2.39 -0.02 2.00 16 37 H 0.08 1.51 6.96 -2.39 -0.02 1.49 16 38 H 0.05 1.65 5.74 -2.39 -0.01 1.63 16 39 H 0.39 7.21 9.12 -74.05 -0.68 6.53 16 40 H 0.41 11.93 6.69 -92.71 -0.62 11.31 16 41 H 0.13 4.23 6.39 -2.91 -0.02 4.21 16 42 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 44 H 0.28 14.84 8.30 -92.70 -0.77 14.07 16 45 H 0.10 6.42 5.76 -2.91 -0.02 6.40 16 46 H 0.03 0.96 7.18 -2.39 -0.02 0.95 16 47 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.07 1.82 7.19 -2.39 -0.02 1.81 16 49 H 0.07 1.62 6.99 -2.38 -0.02 1.60 16 50 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.04 1.47 6.78 -2.39 -0.02 1.46 16 Total: -1.00 -71.92 402.50 1.51 -70.41 By element: Atomic # 1 Polarization: 48.21 SS G_CDS: -0.34 Total: 47.87 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 4.82 Total: -33.80 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.53 Total: -71.77 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -3.47 Total: -55.27 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -71.92 1.51 -70.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188875144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.004 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds