Wall clock time and date at job start Wed Apr 1 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47233 * 2 1 4 4 C 1.42899 * 114.00021 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.85195 * 18.79518 * 4 3 2 6 6 C 1.53787 * 113.68722 * 247.53119 * 4 3 2 7 7 C 1.53775 * 87.08167 * 220.00673 * 6 4 3 8 8 O 1.42893 * 113.61647 * 270.88592 * 7 6 4 9 9 C 1.53001 * 113.61365 * 139.98029 * 7 6 4 10 10 N 1.46503 * 109.47086 * 82.50479 * 9 7 6 11 11 C 1.34778 * 120.00080 * 179.97438 * 10 9 7 12 12 O 1.21542 * 120.00040 * 0.02562 * 11 10 9 13 13 C 1.47886 * 119.99690 * 179.97438 * 11 10 9 14 14 C 1.39920 * 120.02938 * 0.02562 * 13 11 10 15 15 C 1.38327 * 120.35776 * 180.02562 * 14 13 11 16 16 C 1.37748 * 120.41406 * 359.97438 * 15 14 13 17 17 C 1.40748 * 120.04084 * 359.97438 * 16 15 14 18 18 C 1.41438 * 120.17965 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00053 * 24.35844 * 18 17 16 20 20 C 1.39938 * 119.99790 * 204.35701 * 18 17 16 21 21 N 1.30827 * 120.00298 * 17.74520 * 20 18 17 22 22 Si 1.86808 * 119.99740 * 197.73778 * 20 18 17 23 23 H 1.48500 * 109.46934 * 90.00406 * 22 20 18 24 24 H 1.48503 * 109.46841 * 210.00554 * 22 20 18 25 25 H 1.48496 * 109.46910 * 330.00567 * 22 20 18 26 26 C 1.38998 * 120.01972 * 179.72533 * 13 11 10 27 27 C 1.53776 * 113.61431 * 150.00039 * 4 3 2 28 28 C 1.52999 * 113.61367 * 254.60814 * 27 4 3 29 29 C 1.53001 * 113.61848 * 25.51388 * 27 4 3 30 30 H 1.08996 * 109.47226 * 300.00096 * 1 2 3 31 31 H 1.08999 * 109.47382 * 60.00152 * 1 2 3 32 32 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46758 * 239.99284 * 2 1 3 34 34 H 1.09000 * 109.46770 * 120.00290 * 2 1 3 35 35 H 1.08999 * 113.61466 * 334.55845 * 6 4 3 36 36 H 1.09004 * 113.61096 * 105.36936 * 6 4 3 37 37 H 0.96703 * 114.00279 * 277.49926 * 8 7 6 38 38 H 1.09004 * 109.47273 * 202.50405 * 9 7 6 39 39 H 1.09000 * 109.47033 * 322.50339 * 9 7 6 40 40 H 0.97001 * 119.99757 * 359.97438 * 10 9 7 41 41 H 1.08002 * 119.81472 * 0.02562 * 14 13 11 42 42 H 1.08004 * 119.78907 * 179.97438 * 15 14 13 43 43 H 1.08002 * 119.98218 * 179.97438 * 16 15 14 44 44 H 0.96997 * 119.99840 * 179.97438 * 21 20 18 45 45 H 1.07993 * 120.20387 * 0.02562 * 26 13 11 46 46 H 1.08999 * 109.47050 * 79.50341 * 28 27 4 47 47 H 1.09001 * 109.47206 * 199.50664 * 28 27 4 48 48 H 1.09002 * 109.47224 * 319.50593 * 28 27 4 49 49 H 1.09002 * 109.47032 * 40.49095 * 29 27 4 50 50 H 1.09000 * 109.47379 * 160.49578 * 29 27 4 51 51 H 1.09009 * 109.46653 * 280.49841 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9278 0.5456 -0.3245 6 6 4.0048 2.0452 1.3007 7 6 4.9914 2.8300 0.4201 8 8 6.2021 2.1222 0.1460 9 6 5.2344 4.2627 0.8990 10 7 6.2385 4.2573 1.9658 11 6 6.6146 5.4156 2.5431 12 8 6.1204 6.4646 2.1791 13 6 7.6278 5.4100 3.6204 14 6 8.1967 4.2026 4.0403 15 6 9.1445 4.1894 5.0476 16 6 9.5398 5.3641 5.6487 17 6 8.9794 6.5885 5.2390 18 6 9.3835 7.7965 5.8537 19 1 10.3514 7.8636 6.3281 20 6 8.5291 8.9047 5.8473 21 7 7.2546 8.7467 5.5979 22 14 9.2085 10.6098 6.1949 23 1 9.6335 11.2426 4.9204 24 1 8.1566 11.4410 6.8337 25 1 10.3754 10.5012 7.1068 26 6 8.0201 6.6049 4.2122 27 6 3.9483 2.7252 -0.7051 28 6 4.5575 2.4541 -2.0822 29 6 2.9406 3.8764 -0.7158 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3023 2.6793 1.8414 36 1 4.4830 1.3027 1.9396 37 1 6.8621 2.1844 0.8500 38 1 5.5922 4.8684 0.0663 39 1 4.3027 4.6817 1.2790 40 1 6.6327 3.4200 2.2565 41 1 7.8940 3.2760 3.5753 42 1 9.5774 3.2521 5.3649 43 1 10.2801 5.3457 6.4349 44 1 6.6624 9.5149 5.5938 45 1 7.5869 7.5396 3.8883 46 1 3.7598 2.3400 -2.8162 47 1 5.1970 3.2895 -2.3674 48 1 5.1496 1.5398 -2.0440 49 1 2.4361 3.9267 0.2491 50 1 3.4630 4.8148 -0.9020 51 1 2.2048 3.7078 -1.5022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191735677.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:27 Heat of formation + Delta-G solvation = -118.487773 kcal Electronic energy + Delta-G solvation = -30808.517010 eV Core-core repulsion = 26672.239464 eV Total energy + Delta-G solvation = -4136.277547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99819 -40.71673 -38.85692 -38.27708 -36.11131 -35.66278 -35.24052 -32.22997 -32.03203 -31.30833 -31.20637 -29.17197 -28.02340 -27.12791 -24.55310 -23.90216 -23.48610 -23.01971 -22.67266 -21.39544 -19.75932 -19.62494 -18.43200 -17.62687 -17.40688 -17.07803 -16.84010 -16.54294 -16.48958 -16.24534 -16.04007 -15.71774 -15.12209 -14.95530 -14.76893 -14.66330 -14.39051 -14.28407 -14.11992 -13.73104 -13.47668 -13.42318 -13.34850 -13.19106 -13.02834 -12.94892 -12.87671 -12.82065 -12.54241 -12.48976 -12.22547 -12.18984 -11.91535 -11.86127 -11.73410 -11.51268 -11.23628 -11.09213 -10.82131 -10.75834 -10.28413 -10.23176 -9.48338 -9.38968 -8.67508 -6.38857 0.36339 1.00415 1.35713 1.47458 1.50004 2.06838 2.08205 2.18408 2.71723 2.77248 2.83559 3.29737 3.50536 3.60153 3.67604 3.69660 4.00216 4.06422 4.18280 4.23212 4.31384 4.41055 4.41941 4.45884 4.52954 4.58457 4.61192 4.68742 4.77323 4.82592 4.87873 4.91583 4.93030 4.98301 5.05880 5.08264 5.09109 5.13702 5.18728 5.25785 5.29565 5.31620 5.44015 5.44235 5.51314 5.85092 5.91540 6.04977 6.27984 6.34965 6.43522 6.58548 6.65834 6.87383 6.94119 7.24872 8.29218 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.002193 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.053907 B =12763.960446 C =13176.587086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.386 6.386 4 C 0.086 3.914 5 H 0.101 0.899 6 C -0.177 4.177 7 C 0.114 3.886 8 O -0.535 6.535 9 C 0.112 3.888 10 N -0.710 5.710 11 C 0.563 3.437 12 O -0.587 6.587 13 C -0.138 4.138 14 C -0.195 4.195 15 C -0.095 4.095 16 C -0.216 4.216 17 C 0.066 3.934 18 C -0.497 4.497 19 H 0.084 0.916 20 C 0.029 3.971 21 N -0.825 5.825 22 Si 0.982 3.018 23 H -0.267 1.267 24 H -0.270 1.270 25 H -0.250 1.250 26 C -0.132 4.132 27 C -0.062 4.062 28 C -0.126 4.126 29 C -0.122 4.122 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.388 0.612 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.410 0.590 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.108 0.892 44 H 0.286 0.714 45 H 0.097 0.903 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -18.275 -11.646 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.305 6.305 4 C 0.028 3.972 5 H 0.119 0.881 6 C -0.215 4.215 7 C 0.072 3.928 8 O -0.343 6.343 9 C -0.012 4.012 10 N -0.365 5.365 11 C 0.353 3.647 12 O -0.468 6.468 13 C -0.142 4.142 14 C -0.215 4.215 15 C -0.113 4.113 16 C -0.236 4.236 17 C 0.064 3.936 18 C -0.526 4.526 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.451 5.451 22 Si 0.803 3.197 23 H -0.192 1.192 24 H -0.194 1.194 25 H -0.173 1.173 26 C -0.153 4.153 27 C -0.063 4.063 28 C -0.183 4.183 29 C -0.179 4.179 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.239 0.761 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.249 0.751 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.843 -17.432 -12.478 23.590 hybrid contribution 0.714 0.859 1.027 1.517 sum -9.128 -16.573 -11.452 22.117 Atomic orbital electron populations 1.21757 0.93159 1.03211 1.02558 1.22689 0.96169 0.83245 1.00684 1.87935 1.20523 1.27513 1.94525 1.23625 0.81069 0.97401 0.95099 0.88077 1.24172 0.98629 1.00681 0.97975 1.22105 0.85331 0.88234 0.97163 1.86482 1.26204 1.73487 1.48107 1.21851 0.92086 0.97627 0.89651 1.45575 1.43452 1.08938 1.38557 1.18737 0.81248 0.83286 0.81429 1.90684 1.57608 1.33281 1.65204 1.19744 0.99860 0.95738 0.98825 1.20853 1.02409 0.95380 1.02855 1.20938 0.96926 0.97575 0.95846 1.21418 1.06084 0.92462 1.03665 1.17959 0.91392 0.93890 0.90409 1.19870 1.03113 0.96172 1.33448 0.89795 1.26858 0.94157 1.05356 0.92262 1.69888 1.05035 1.34270 1.35898 0.85198 0.79265 0.75864 0.79394 1.19153 1.19440 1.17323 1.21454 1.00535 0.96524 0.96746 1.22259 0.93093 0.96226 0.94749 1.21557 1.00382 1.02166 0.94213 1.21471 0.97731 0.95861 1.02877 0.92634 0.92245 0.89366 0.92445 0.92931 0.89233 0.89174 0.76141 0.92096 0.91210 0.75139 0.84243 0.84180 0.87391 0.90333 0.88452 0.91642 0.92780 0.91698 0.92468 0.92570 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.05 0.66 6.50 71.98 0.47 1.13 16 3 O -0.39 -7.30 9.51 -148.98 -1.42 -8.72 16 4 C 0.09 1.52 3.66 31.12 0.11 1.64 16 5 H 0.10 1.59 7.73 -2.39 -0.02 1.57 16 6 C -0.18 -3.30 6.94 31.12 0.22 -3.08 16 7 C 0.11 2.29 1.29 -10.27 -0.01 2.28 16 8 O -0.54 -9.91 12.34 -148.98 -1.84 -11.75 16 9 C 0.11 3.02 4.18 86.38 0.36 3.38 16 10 N -0.71 -21.25 5.29 -465.92 -2.46 -23.71 16 11 C 0.56 24.23 7.77 86.80 0.67 24.91 16 12 O -0.59 -30.45 16.33 -3.85 -0.06 -30.51 16 13 C -0.14 -6.39 5.87 -20.13 -0.12 -6.51 16 14 C -0.20 -7.27 9.55 22.70 0.22 -7.05 16 15 C -0.09 -3.61 10.01 22.17 0.22 -3.39 16 16 C -0.22 -9.93 9.78 22.77 0.22 -9.71 16 17 C 0.07 3.55 5.57 -21.32 -0.12 3.43 16 18 C -0.50 -27.02 9.05 23.47 0.21 -26.81 16 19 H 0.08 4.31 7.91 -2.91 -0.02 4.28 16 20 C 0.03 1.50 5.14 85.25 0.44 1.94 16 21 N -0.83 -46.27 10.96 21.82 0.24 -46.03 16 22 Si 0.98 39.84 29.60 68.60 2.03 41.87 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 26 C -0.13 -7.29 8.24 23.01 0.19 -7.10 16 27 C -0.06 -1.20 1.27 -51.66 -0.07 -1.26 16 28 C -0.13 -2.23 8.69 71.98 0.63 -1.60 16 29 C -0.12 -2.47 7.19 71.98 0.52 -1.95 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 1.91 7.45 -2.39 -0.02 1.89 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.39 5.37 7.30 -74.06 -0.54 4.83 16 38 H 0.06 1.82 8.09 -2.39 -0.02 1.80 16 39 H 0.07 2.06 7.08 -2.39 -0.02 2.04 16 40 H 0.41 9.28 5.05 -92.71 -0.47 8.81 16 41 H 0.14 3.68 6.38 -2.91 -0.02 3.67 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 44 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 45 H 0.10 6.03 5.74 -2.91 -0.02 6.02 16 46 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 47 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 1.13 7.59 -2.39 -0.02 1.11 16 49 H 0.06 1.24 7.05 -2.39 -0.02 1.22 16 50 H 0.06 1.19 7.52 -2.39 -0.02 1.17 16 51 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -70.35 408.90 1.33 -69.02 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.06 Total: 40.62 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 4.90 Total: -30.78 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -2.22 Total: -69.74 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -3.32 Total: -50.98 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -70.35 1.33 -69.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191735677.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.464 kcal (2) G-P(sol) polarization free energy of solvation -70.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds