Wall clock time and date at job start Wed Apr 1 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47395 * 2 1 4 4 C 1.42904 * 114.00065 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.90313 * 338.24444 * 4 3 2 6 6 C 1.53775 * 113.61922 * 109.50128 * 4 3 2 7 7 C 1.53784 * 87.08363 * 89.11414 * 6 4 3 8 8 O 1.42895 * 113.61332 * 270.80553 * 7 6 4 9 9 C 1.53000 * 113.61574 * 139.98032 * 7 6 4 10 10 N 1.46505 * 109.46749 * 80.86497 * 9 7 6 11 11 C 1.34776 * 119.99503 * 179.97438 * 10 9 7 12 12 O 1.21544 * 120.00472 * 359.72613 * 11 10 9 13 13 C 1.47887 * 119.99619 * 179.97438 * 11 10 9 14 14 C 1.39913 * 120.02665 * 0.02562 * 13 11 10 15 15 C 1.38335 * 120.36116 * 179.97438 * 14 13 11 16 16 C 1.37756 * 120.40633 * 0.02562 * 15 14 13 17 17 C 1.40743 * 120.04221 * 0.02562 * 16 15 14 18 18 C 1.41438 * 120.17710 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00166 * 24.33640 * 18 17 16 20 20 C 1.39941 * 119.99880 * 204.34510 * 18 17 16 21 21 N 1.30820 * 120.00125 * 17.71827 * 20 18 17 22 22 Si 1.86798 * 119.99718 * 197.72012 * 20 18 17 23 23 H 1.48495 * 109.47373 * 94.69064 * 22 20 18 24 24 H 1.48508 * 109.47074 * 214.68727 * 22 20 18 25 25 H 1.48505 * 109.47514 * 334.68823 * 22 20 18 26 26 C 1.38998 * 120.02568 * 179.72429 * 13 11 10 27 27 C 1.53785 * 87.16893 * 25.39297 * 7 6 4 28 28 C 1.52991 * 113.61582 * 89.15893 * 27 7 6 29 29 C 1.53000 * 113.60956 * 220.06156 * 27 7 6 30 30 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46885 * 300.00400 * 1 2 3 32 32 H 1.08997 * 109.46934 * 60.00151 * 1 2 3 33 33 H 1.09003 * 109.47046 * 239.99427 * 2 1 3 34 34 H 1.09007 * 109.47055 * 119.99691 * 2 1 3 35 35 H 1.09004 * 113.61590 * 334.56928 * 6 4 3 36 36 H 1.08995 * 113.61946 * 203.66537 * 6 4 3 37 37 H 0.96708 * 113.99987 * 279.13292 * 8 7 6 38 38 H 1.08998 * 109.46921 * 320.86563 * 9 7 6 39 39 H 1.08998 * 109.47224 * 200.86531 * 9 7 6 40 40 H 0.96997 * 120.00062 * 0.02562 * 10 9 7 41 41 H 1.07996 * 119.82499 * 359.95640 * 14 13 11 42 42 H 1.07991 * 119.79604 * 179.97438 * 15 14 13 43 43 H 1.07999 * 119.97204 * 179.97438 * 16 15 14 44 44 H 0.97000 * 120.00181 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.19918 * 0.02562 * 26 13 11 46 46 H 1.09006 * 109.47600 * 59.99759 * 28 27 7 47 47 H 1.08997 * 109.47537 * 179.97438 * 28 27 7 48 48 H 1.09001 * 109.47155 * 300.00178 * 28 27 7 49 49 H 1.09000 * 109.47609 * 60.00165 * 29 27 7 50 50 H 1.09003 * 109.47011 * 179.97438 * 29 27 7 51 51 H 1.09002 * 109.47371 * 299.99857 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.9276 0.5638 0.3712 6 6 4.0075 1.9777 -1.3289 7 6 3.8422 3.3958 -0.7573 8 8 2.5657 3.9774 -1.0296 9 6 5.0053 4.3313 -1.0930 10 7 4.8357 4.8533 -2.4514 11 6 5.7464 5.7037 -2.9650 12 8 6.7057 6.0416 -2.2995 13 6 5.5755 6.2301 -4.3364 14 6 4.4685 5.8461 -5.1009 15 6 4.3015 6.3347 -6.3843 16 6 5.2231 7.2043 -6.9246 17 6 6.3437 7.6011 -6.1711 18 6 7.2914 8.4943 -6.7229 19 1 7.0007 9.1687 -7.5147 20 6 8.6059 8.5040 -6.2429 21 7 9.0579 7.4885 -5.5530 22 14 9.7151 9.9670 -6.5873 23 1 9.6592 10.9110 -5.4424 24 1 11.1114 9.4966 -6.7731 25 1 9.2568 10.6564 -7.8201 26 6 6.5113 7.1118 -4.8646 27 6 3.9449 2.7621 0.6402 28 6 5.3788 2.6630 1.1642 29 6 2.9785 3.3678 1.6601 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 3.3695 1.7768 -2.1896 36 1 5.0462 1.6922 -1.4949 37 1 2.4873 4.3569 -1.9157 38 1 5.9441 3.7810 -1.0298 39 1 5.0213 5.1598 -0.3848 40 1 4.0677 4.5873 -2.9808 41 1 3.7404 5.1642 -4.6870 42 1 3.4438 6.0318 -6.9664 43 1 5.0861 7.5811 -7.9274 44 1 9.9689 7.4953 -5.2200 45 1 7.3651 7.4145 -4.2765 46 1 5.8127 3.6610 1.2269 47 1 5.3732 2.2068 2.1542 48 1 5.9723 2.0508 0.4851 49 1 1.9536 3.2308 1.3154 50 1 3.1074 2.8713 2.6219 51 1 3.1859 4.4323 1.7696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191735694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:33 Heat of formation + Delta-G solvation = -94.805813 kcal Electronic energy + Delta-G solvation = -30977.017981 eV Core-core repulsion = 26841.767362 eV Total energy + Delta-G solvation = -4135.250620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.03689 -39.09375 -37.41856 -36.91588 -35.14917 -33.98004 -33.62034 -31.42567 -30.61641 -30.16242 -29.46464 -27.78511 -27.19403 -25.29536 -23.29738 -23.11742 -22.63031 -21.70674 -20.93461 -19.73499 -18.82119 -17.99956 -16.81802 -16.73959 -16.13025 -15.77969 -15.62043 -15.48030 -15.04266 -14.78015 -14.67378 -14.41467 -14.10791 -13.62871 -13.49719 -13.21571 -13.19273 -12.76018 -12.72091 -12.64492 -12.57830 -12.49989 -12.33254 -12.20038 -11.95177 -11.70140 -11.62069 -11.55944 -11.18906 -11.10583 -10.98264 -10.87563 -10.75011 -10.52004 -10.24112 -10.04601 -9.74711 -9.68979 -9.56956 -9.24271 -9.05307 -8.73429 -7.65777 -7.54770 -6.82366 -4.43679 2.17884 2.79200 3.06668 3.10243 3.13907 3.27470 3.53500 3.75983 3.85124 3.90568 4.25427 4.43896 4.56193 4.59433 4.62205 4.79709 4.90622 4.99260 5.07181 5.09608 5.16705 5.37914 5.41682 5.49757 5.54688 5.58198 5.61549 5.63358 5.68250 5.73592 5.77335 5.85160 5.86630 5.92158 5.99482 6.06336 6.18983 6.23809 6.43232 6.69131 6.75302 6.96277 6.98811 7.08775 7.18800 7.35537 7.55460 7.66604 7.72131 7.89286 8.03205 8.15995 8.48235 8.77980 8.80940 8.89890 10.12439 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002276 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.408732 B =12299.033009 C =13230.307995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.348 6.348 4 C 0.079 3.921 5 H 0.073 0.927 6 C -0.187 4.187 7 C 0.114 3.886 8 O -0.522 6.522 9 C 0.105 3.895 10 N -0.737 5.737 11 C 0.566 3.434 12 O -0.544 6.544 13 C -0.128 4.128 14 C -0.219 4.219 15 C -0.097 4.097 16 C -0.212 4.212 17 C 0.098 3.902 18 C -0.459 4.459 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.911 3.089 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.092 4.092 27 C -0.064 4.064 28 C -0.134 4.134 29 C -0.124 4.124 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.373 0.627 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.394 0.606 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.284 0.716 45 H 0.134 0.866 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.048 0.952 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.708 -13.809 11.624 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.021 3.979 5 H 0.090 0.910 6 C -0.225 4.225 7 C 0.072 3.928 8 O -0.327 6.327 9 C -0.019 4.019 10 N -0.392 5.392 11 C 0.356 3.644 12 O -0.421 6.421 13 C -0.131 4.131 14 C -0.239 4.239 15 C -0.115 4.115 16 C -0.232 4.232 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.100 0.900 20 C -0.146 4.146 21 N -0.407 5.407 22 Si 0.735 3.265 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.112 4.112 27 C -0.065 4.065 28 C -0.191 4.191 29 C -0.181 4.181 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.221 0.779 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.151 0.849 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.067 0.933 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.033 -13.704 12.843 21.293 hybrid contribution 0.483 0.268 -1.104 1.235 sum -9.549 -13.435 11.739 20.236 Atomic orbital electron populations 1.21718 0.93731 1.01998 1.03255 1.22516 0.95626 0.84326 0.99744 1.87998 1.19017 1.25273 1.94319 1.23002 0.82089 0.96996 0.95839 0.90952 1.24211 1.02167 0.97342 0.98766 1.22338 0.83497 0.90618 0.96373 1.86568 1.31053 1.77839 1.37261 1.21844 0.97991 0.97503 0.84588 1.45869 1.28069 1.49485 1.15799 1.18840 0.81148 0.77190 0.87178 1.90698 1.30762 1.58929 1.61759 1.19452 0.98474 1.02899 0.92288 1.20304 0.99325 1.07622 0.96616 1.20435 0.98017 0.98198 0.94869 1.21101 0.99097 1.03865 0.99099 1.17608 0.91567 0.90700 0.90532 1.19611 0.93607 1.17673 1.17899 0.90018 1.25974 0.99065 0.96331 0.93267 1.69788 1.17369 1.27393 1.26183 0.86253 0.78772 0.81532 0.79942 1.19186 1.20189 1.18507 1.21643 0.97835 0.96648 0.95099 1.22163 0.96536 0.94252 0.93558 1.21690 0.93035 1.03232 1.01139 1.21424 1.00191 0.99958 0.96535 0.91331 0.91897 0.91745 0.93601 0.93668 0.90033 0.88377 0.77855 0.90644 0.91128 0.77024 0.89399 0.88877 0.88598 0.90438 0.84855 0.90937 0.91565 0.91887 0.90551 0.93298 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.45 6.51 37.16 0.24 0.69 16 3 O -0.35 -3.77 8.39 -39.52 -0.33 -4.10 16 4 C 0.08 0.78 3.78 -25.83 -0.10 0.68 16 5 H 0.07 0.60 7.86 -51.93 -0.41 0.20 16 6 C -0.19 -1.93 6.95 -25.92 -0.18 -2.11 16 7 C 0.11 1.31 1.26 -89.80 -0.11 1.20 16 8 O -0.52 -6.45 11.98 -39.52 -0.47 -6.92 16 9 C 0.11 1.47 4.14 -4.04 -0.02 1.45 16 10 N -0.74 -11.81 5.29 -61.24 -0.32 -12.13 16 11 C 0.57 12.19 7.77 -12.31 -0.10 12.10 16 12 O -0.54 -13.54 16.33 5.33 0.09 -13.45 16 13 C -0.13 -2.98 5.87 -105.04 -0.62 -3.60 16 14 C -0.22 -4.49 9.55 -38.92 -0.37 -4.86 16 15 C -0.10 -2.04 10.01 -39.72 -0.40 -2.43 16 16 C -0.21 -4.98 9.78 -38.81 -0.38 -5.36 16 17 C 0.10 2.59 5.57 -106.88 -0.60 1.99 16 18 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 19 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 20 C 0.07 1.83 5.14 -17.34 -0.09 1.75 16 21 N -0.78 -20.66 10.96 55.55 0.61 -20.05 16 22 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 26 C -0.09 -2.44 8.24 -38.44 -0.32 -2.76 16 27 C -0.06 -0.66 1.28 -153.61 -0.20 -0.86 16 28 C -0.13 -1.19 7.86 37.15 0.29 -0.89 16 29 C -0.12 -1.33 8.50 37.16 0.32 -1.01 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.96 7.51 -51.93 -0.39 0.57 16 37 H 0.37 3.89 7.42 45.56 0.34 4.23 16 38 H 0.08 1.07 7.08 -51.93 -0.37 0.70 16 39 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 40 H 0.39 5.38 5.14 -40.82 -0.21 5.18 16 41 H 0.09 1.46 6.38 -52.49 -0.33 1.13 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 44 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 45 H 0.13 3.83 5.75 -52.48 -0.30 3.53 16 46 H 0.07 0.69 7.36 -51.93 -0.38 0.31 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.52 7.26 -51.93 -0.38 0.14 16 49 H 0.08 0.94 6.66 -51.93 -0.35 0.59 16 50 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 407.50 15.07 6.14 6.14 Total: -1.00 -30.73 407.50 -9.30 -40.03 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -7.40 Total: 13.85 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.57 Total: -17.07 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.28 Total: -32.18 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.72 Total: -24.47 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.73 -9.30 -40.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191735694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.775 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds