Wall clock time and date at job start Wed Apr 1 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47395 * 2 1 4 4 C 1.42904 * 114.00065 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.90313 * 338.24444 * 4 3 2 6 6 C 1.53775 * 113.61922 * 109.50128 * 4 3 2 7 7 C 1.53784 * 87.08363 * 89.11414 * 6 4 3 8 8 O 1.42895 * 113.61332 * 270.80553 * 7 6 4 9 9 C 1.53000 * 113.61574 * 139.98032 * 7 6 4 10 10 N 1.46505 * 109.46749 * 80.86497 * 9 7 6 11 11 C 1.34776 * 119.99503 * 179.97438 * 10 9 7 12 12 O 1.21544 * 120.00472 * 359.72613 * 11 10 9 13 13 C 1.47887 * 119.99619 * 179.97438 * 11 10 9 14 14 C 1.39913 * 120.02665 * 0.02562 * 13 11 10 15 15 C 1.38335 * 120.36116 * 179.97438 * 14 13 11 16 16 C 1.37756 * 120.40633 * 0.02562 * 15 14 13 17 17 C 1.40743 * 120.04221 * 0.02562 * 16 15 14 18 18 C 1.41438 * 120.17710 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00166 * 24.33640 * 18 17 16 20 20 C 1.39941 * 119.99880 * 204.34510 * 18 17 16 21 21 N 1.30820 * 120.00125 * 17.71827 * 20 18 17 22 22 Si 1.86798 * 119.99718 * 197.72012 * 20 18 17 23 23 H 1.48495 * 109.47373 * 94.69064 * 22 20 18 24 24 H 1.48508 * 109.47074 * 214.68727 * 22 20 18 25 25 H 1.48505 * 109.47514 * 334.68823 * 22 20 18 26 26 C 1.38998 * 120.02568 * 179.72429 * 13 11 10 27 27 C 1.53785 * 87.16893 * 25.39297 * 7 6 4 28 28 C 1.52991 * 113.61582 * 89.15893 * 27 7 6 29 29 C 1.53000 * 113.60956 * 220.06156 * 27 7 6 30 30 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46885 * 300.00400 * 1 2 3 32 32 H 1.08997 * 109.46934 * 60.00151 * 1 2 3 33 33 H 1.09003 * 109.47046 * 239.99427 * 2 1 3 34 34 H 1.09007 * 109.47055 * 119.99691 * 2 1 3 35 35 H 1.09004 * 113.61590 * 334.56928 * 6 4 3 36 36 H 1.08995 * 113.61946 * 203.66537 * 6 4 3 37 37 H 0.96708 * 113.99987 * 279.13292 * 8 7 6 38 38 H 1.08998 * 109.46921 * 320.86563 * 9 7 6 39 39 H 1.08998 * 109.47224 * 200.86531 * 9 7 6 40 40 H 0.96997 * 120.00062 * 0.02562 * 10 9 7 41 41 H 1.07996 * 119.82499 * 359.95640 * 14 13 11 42 42 H 1.07991 * 119.79604 * 179.97438 * 15 14 13 43 43 H 1.07999 * 119.97204 * 179.97438 * 16 15 14 44 44 H 0.97000 * 120.00181 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.19918 * 0.02562 * 26 13 11 46 46 H 1.09006 * 109.47600 * 59.99759 * 28 27 7 47 47 H 1.08997 * 109.47537 * 179.97438 * 28 27 7 48 48 H 1.09001 * 109.47155 * 300.00178 * 28 27 7 49 49 H 1.09000 * 109.47609 * 60.00165 * 29 27 7 50 50 H 1.09003 * 109.47011 * 179.97438 * 29 27 7 51 51 H 1.09002 * 109.47371 * 299.99857 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.9276 0.5638 0.3712 6 6 4.0075 1.9777 -1.3289 7 6 3.8422 3.3958 -0.7573 8 8 2.5657 3.9774 -1.0296 9 6 5.0053 4.3313 -1.0930 10 7 4.8357 4.8533 -2.4514 11 6 5.7464 5.7037 -2.9650 12 8 6.7057 6.0416 -2.2995 13 6 5.5755 6.2301 -4.3364 14 6 4.4685 5.8461 -5.1009 15 6 4.3015 6.3347 -6.3843 16 6 5.2231 7.2043 -6.9246 17 6 6.3437 7.6011 -6.1711 18 6 7.2914 8.4943 -6.7229 19 1 7.0007 9.1687 -7.5147 20 6 8.6059 8.5040 -6.2429 21 7 9.0579 7.4885 -5.5530 22 14 9.7151 9.9670 -6.5873 23 1 9.6592 10.9110 -5.4424 24 1 11.1114 9.4966 -6.7731 25 1 9.2568 10.6564 -7.8201 26 6 6.5113 7.1118 -4.8646 27 6 3.9449 2.7621 0.6402 28 6 5.3788 2.6630 1.1642 29 6 2.9785 3.3678 1.6601 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 3.3695 1.7768 -2.1896 36 1 5.0462 1.6922 -1.4949 37 1 2.4873 4.3569 -1.9157 38 1 5.9441 3.7810 -1.0298 39 1 5.0213 5.1598 -0.3848 40 1 4.0677 4.5873 -2.9808 41 1 3.7404 5.1642 -4.6870 42 1 3.4438 6.0318 -6.9664 43 1 5.0861 7.5811 -7.9274 44 1 9.9689 7.4953 -5.2200 45 1 7.3651 7.4145 -4.2765 46 1 5.8127 3.6610 1.2269 47 1 5.3732 2.2068 2.1542 48 1 5.9723 2.0508 0.4851 49 1 1.9536 3.2308 1.3154 50 1 3.1074 2.8713 2.6219 51 1 3.1859 4.4323 1.7696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191735694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:32 Heat of formation + Delta-G solvation = -114.600317 kcal Electronic energy + Delta-G solvation = -30977.876336 eV Core-core repulsion = 26841.767362 eV Total energy + Delta-G solvation = -4136.108974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.96082 -40.71061 -38.84856 -38.10503 -36.11036 -35.65903 -35.20215 -32.23672 -32.02895 -31.30576 -31.15969 -28.92658 -28.07985 -27.14079 -24.56337 -23.93972 -23.37399 -23.03291 -22.68598 -21.37220 -19.74946 -19.60405 -18.34243 -17.51890 -17.36520 -17.10485 -16.82158 -16.55034 -16.39901 -16.24111 -16.05724 -15.72364 -15.14327 -14.93574 -14.85268 -14.69705 -14.32576 -14.25331 -14.00729 -13.65671 -13.47855 -13.44661 -13.30114 -13.10354 -12.99640 -12.95322 -12.82192 -12.76121 -12.53906 -12.45239 -12.25683 -12.18938 -11.91139 -11.73336 -11.64004 -11.51175 -11.18266 -11.09421 -10.78008 -10.60300 -10.29708 -10.21075 -9.48460 -9.39447 -8.67656 -6.38959 0.36231 0.99904 1.35863 1.47134 1.50464 2.07727 2.11554 2.18529 2.59420 2.77363 2.93596 3.41932 3.55793 3.63005 3.69389 3.74028 4.00769 4.19841 4.23706 4.24421 4.34688 4.36573 4.41690 4.52349 4.54854 4.57843 4.63112 4.73640 4.77611 4.80515 4.87634 4.90668 4.98772 5.01435 5.07592 5.08225 5.08963 5.17383 5.18216 5.26634 5.30376 5.32172 5.45608 5.51134 5.57244 5.84888 5.91364 6.04512 6.27569 6.40669 6.44853 6.62776 6.71491 6.87226 6.93703 7.25354 8.29302 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002276 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.408732 B =12299.033009 C =13230.307995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.368 6.368 4 C 0.083 3.917 5 H 0.093 0.907 6 C -0.182 4.182 7 C 0.114 3.886 8 O -0.532 6.532 9 C 0.107 3.893 10 N -0.711 5.711 11 C 0.563 3.437 12 O -0.587 6.587 13 C -0.138 4.138 14 C -0.196 4.196 15 C -0.095 4.095 16 C -0.217 4.217 17 C 0.066 3.934 18 C -0.497 4.497 19 H 0.084 0.916 20 C 0.029 3.971 21 N -0.825 5.825 22 Si 0.983 3.017 23 H -0.267 1.267 24 H -0.268 1.268 25 H -0.250 1.250 26 C -0.132 4.132 27 C -0.066 4.066 28 C -0.134 4.134 29 C -0.120 4.120 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.380 0.620 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.409 0.591 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.108 0.892 44 H 0.286 0.714 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 -15.769 11.645 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.287 6.287 4 C 0.025 3.975 5 H 0.111 0.889 6 C -0.220 4.220 7 C 0.072 3.928 8 O -0.338 6.338 9 C -0.016 4.016 10 N -0.365 5.365 11 C 0.353 3.647 12 O -0.468 6.468 13 C -0.141 4.141 14 C -0.216 4.216 15 C -0.113 4.113 16 C -0.236 4.236 17 C 0.064 3.936 18 C -0.526 4.526 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.192 1.192 24 H -0.193 1.193 25 H -0.174 1.174 26 C -0.152 4.152 27 C -0.066 4.066 28 C -0.191 4.191 29 C -0.177 4.177 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.229 0.771 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.247 0.753 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.116 0.884 46 H 0.079 0.921 47 H 0.102 0.898 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.991 -15.699 12.853 23.568 hybrid contribution 0.843 0.744 -1.061 1.546 sum -11.147 -14.955 11.793 22.068 Atomic orbital electron populations 1.21730 0.93259 1.03072 1.02449 1.22696 0.96079 0.83377 1.00633 1.87981 1.19442 1.26935 1.94372 1.22987 0.82031 0.97329 0.95146 0.88926 1.24209 1.02726 0.95955 0.99140 1.22406 0.82085 0.90425 0.97884 1.86578 1.31243 1.78065 1.37960 1.21981 0.99509 0.97461 0.82685 1.45605 1.26921 1.47377 1.16605 1.18721 0.81496 0.77853 0.86644 1.90677 1.32799 1.60720 1.62581 1.19750 0.98675 1.02185 0.93534 1.20835 0.98392 1.06357 0.96025 1.20931 0.98509 0.96622 0.95235 1.21413 0.98636 1.04035 0.99558 1.17956 0.93018 0.91670 0.90963 1.19872 0.94628 1.18939 1.19142 0.89812 1.26856 1.00296 0.98752 0.92713 1.69884 1.17828 1.29442 1.27880 0.85183 0.76900 0.77717 0.79895 1.19249 1.19302 1.17354 1.21449 0.98585 0.99589 0.95586 1.22261 0.97253 0.94478 0.92658 1.21708 0.92084 1.02908 1.02361 1.21361 0.99352 0.99524 0.97443 0.89348 0.92477 0.92733 0.92979 0.92421 0.90034 0.87598 0.77073 0.90580 0.92607 0.75312 0.84542 0.84299 0.87375 0.90299 0.88378 0.92129 0.89789 0.91086 0.92136 0.91784 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.05 0.67 6.51 71.98 0.47 1.14 16 3 O -0.37 -7.18 8.39 -144.88 -1.22 -8.39 16 4 C 0.08 1.43 3.78 31.18 0.12 1.54 16 5 H 0.09 1.22 7.86 -2.39 -0.02 1.20 16 6 C -0.18 -3.30 6.95 31.12 0.22 -3.09 16 7 C 0.11 2.43 1.26 -10.27 -0.01 2.41 16 8 O -0.53 -12.20 11.98 -144.88 -1.74 -13.93 16 9 C 0.11 2.90 4.14 86.38 0.36 3.26 16 10 N -0.71 -21.83 5.29 -465.93 -2.47 -24.30 16 11 C 0.56 24.44 7.77 86.80 0.67 25.11 16 12 O -0.59 -30.39 16.33 -3.86 -0.06 -30.45 16 13 C -0.14 -6.46 5.87 -20.13 -0.12 -6.58 16 14 C -0.20 -7.51 9.55 22.70 0.22 -7.29 16 15 C -0.10 -3.69 10.01 22.18 0.22 -3.47 16 16 C -0.22 -10.05 9.78 22.77 0.22 -9.82 16 17 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 18 C -0.50 -27.08 9.05 23.47 0.21 -26.87 16 19 H 0.08 4.32 7.91 -2.91 -0.02 4.29 16 20 C 0.03 1.51 5.14 85.26 0.44 1.95 16 21 N -0.82 -46.09 10.96 21.82 0.24 -45.85 16 22 Si 0.98 39.80 29.59 68.60 2.03 41.83 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 26 C -0.13 -7.30 8.24 23.01 0.19 -7.11 16 27 C -0.07 -1.23 1.28 -51.60 -0.07 -1.30 16 28 C -0.13 -2.12 7.86 71.98 0.57 -1.56 16 29 C -0.12 -2.41 8.50 71.98 0.61 -1.80 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.11 1.76 7.51 -2.39 -0.02 1.75 16 37 H 0.38 7.00 7.42 -74.05 -0.55 6.45 16 38 H 0.08 2.10 7.08 -2.39 -0.02 2.08 16 39 H 0.06 1.71 8.11 -2.39 -0.02 1.69 16 40 H 0.41 9.98 5.14 -92.71 -0.48 9.50 16 41 H 0.14 3.83 6.38 -2.91 -0.02 3.81 16 42 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 43 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.29 14.73 8.30 -92.71 -0.77 13.96 16 45 H 0.10 6.08 5.75 -2.91 -0.02 6.07 16 46 H 0.06 1.11 7.36 -2.38 -0.02 1.09 16 47 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 1.01 7.26 -2.39 -0.02 1.00 16 49 H 0.06 1.42 6.66 -2.39 -0.02 1.41 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -71.33 407.50 1.65 -69.68 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: -0.08 Total: 42.48 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 4.94 Total: -31.06 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -2.23 Total: -70.15 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -3.01 Total: -52.78 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -71.33 1.65 -69.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191735694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.917 kcal (2) G-P(sol) polarization free energy of solvation -71.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds