Wall clock time and date at job start Wed Apr 1 2020 05:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35899 * 116.99727 * 2 1 4 4 C 1.38738 * 120.04996 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.93858 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.06011 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94652 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47473 * 89.99874 * 7 6 5 9 9 C 1.53005 * 109.47110 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46927 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46927 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47160 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99855 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00197 * 180.02562 * 12 11 10 15 15 C 1.47581 * 134.49354 * 180.02562 * 14 12 11 16 16 C 1.53945 * 86.11895 * 155.35947 * 15 14 12 17 17 O 1.42904 * 113.73986 * 269.15696 * 16 15 14 18 18 C 1.50694 * 113.74220 * 137.95139 * 16 15 14 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.47582 * 134.48982 * 359.97438 * 14 12 11 27 27 C 1.38271 * 120.10769 * 0.25441 * 6 5 4 28 28 C 1.38138 * 120.05874 * 359.44892 * 27 6 5 29 29 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46989 * 299.99439 * 1 2 3 31 31 H 1.09002 * 109.46989 * 59.99894 * 1 2 3 32 32 H 1.07992 * 120.03137 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.96941 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.46802 * 329.99259 * 7 6 5 35 35 H 1.08998 * 109.46986 * 210.00457 * 7 6 5 36 36 H 1.08994 * 109.47285 * 60.00271 * 8 7 6 37 37 H 1.09001 * 109.47042 * 300.00031 * 8 7 6 38 38 H 1.09008 * 109.46756 * 60.00307 * 9 8 7 39 39 H 1.09001 * 109.47279 * 299.99991 * 9 8 7 40 40 H 1.09008 * 109.46834 * 60.00744 * 10 9 8 41 41 H 1.09001 * 109.47451 * 300.00274 * 10 9 8 42 42 H 1.08994 * 109.46740 * 60.00432 * 11 10 9 43 43 H 1.09001 * 109.47279 * 300.00380 * 11 10 9 44 44 H 1.09001 * 113.77016 * 41.05438 * 15 14 12 45 45 H 1.09005 * 113.86980 * 269.67513 * 15 14 12 46 46 H 0.96699 * 113.99284 * 178.07513 * 17 16 15 47 47 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 48 48 H 1.09002 * 113.76615 * 90.34214 * 26 14 12 49 49 H 1.08991 * 113.77327 * 318.94082 * 26 14 12 50 50 H 1.08005 * 119.96695 * 179.70518 * 27 6 5 51 51 H 1.07999 * 120.03487 * 180.25249 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 6 4.2171 5.4745 -1.4392 9 6 4.9111 6.8381 -1.4379 10 6 5.1426 7.2938 -2.8800 11 6 5.8361 8.6577 -2.8788 12 6 6.0636 9.1069 -4.2991 13 8 5.7058 8.4055 -5.2216 14 7 6.6646 10.2880 -4.5443 15 6 7.0378 11.0243 -5.7676 16 6 6.9666 12.2938 -4.8996 17 8 5.6799 12.9155 -4.8942 18 6 8.0884 13.2670 -5.1549 19 1 8.8437 13.0392 -5.8925 20 6 8.1506 14.4485 -4.4468 21 7 7.2306 14.7262 -3.5490 22 14 9.5416 15.6546 -4.7627 23 1 9.3808 16.8379 -3.8799 24 1 10.8418 14.9965 -4.4774 25 1 9.5075 16.0886 -6.1825 26 6 7.2129 11.3650 -3.6972 27 6 1.9211 3.6047 0.0080 28 6 1.2915 2.3752 0.0013 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0209 0.3799 -0.0014 33 1 5.1345 2.5750 0.0000 34 1 4.9443 4.9376 0.5162 35 1 3.3584 5.7456 0.5177 36 1 3.2590 5.5555 -1.9526 37 1 4.8449 4.7473 -1.9541 38 1 5.8693 6.7576 -0.9244 39 1 4.2829 7.5651 -0.9232 40 1 4.1846 7.3743 -3.3939 41 1 5.7710 6.5668 -3.3945 42 1 6.7939 8.5777 -2.3648 43 1 5.2073 9.3845 -2.3644 44 1 6.2817 10.9853 -6.5518 45 1 8.0398 10.7964 -6.1313 46 1 5.6231 13.6966 -4.3269 47 1 7.2745 15.5572 -3.0506 48 1 8.2667 11.2362 -3.4502 49 1 6.5966 11.5980 -2.8290 50 1 1.3343 4.5114 0.0140 51 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193979956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:55 Heat of formation + Delta-G solvation = -107.609913 kcal Electronic energy + Delta-G solvation = -28628.393729 eV Core-core repulsion = 24492.587881 eV Total energy + Delta-G solvation = -4135.805847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.18150 -41.07049 -39.22732 -38.80402 -36.68852 -35.79441 -34.12143 -33.85497 -32.02546 -31.24010 -30.06252 -28.50033 -27.52633 -26.98044 -26.36170 -23.85396 -23.50217 -22.04992 -21.68793 -21.44813 -19.84492 -19.19097 -19.08909 -17.85522 -17.32132 -17.22442 -16.97732 -16.65514 -16.57089 -16.29019 -16.08769 -15.89283 -15.31834 -15.09560 -14.78872 -14.58662 -14.47302 -14.30965 -14.13262 -13.98006 -13.65242 -13.46492 -13.37998 -13.26897 -12.86840 -12.81173 -12.75629 -12.66724 -12.61655 -12.24365 -12.20166 -12.06429 -11.89052 -11.76264 -11.62933 -11.57397 -11.36763 -11.32343 -10.88896 -10.60938 -10.22469 -9.94788 -9.54784 -9.01193 -8.25590 -6.42514 0.39720 0.45542 1.48888 1.51278 1.58158 1.68180 2.00618 2.38953 2.41935 2.78791 2.97108 3.48313 3.79432 3.83425 3.85074 3.95904 4.03851 4.12045 4.19448 4.22548 4.28766 4.33767 4.36284 4.47044 4.48025 4.52056 4.58762 4.62420 4.62836 4.69229 4.76088 4.78852 4.83834 4.92151 4.92585 4.96164 5.02666 5.03690 5.10209 5.15626 5.26517 5.33051 5.36720 5.42297 5.43947 5.55225 5.73812 5.75990 5.86241 5.94382 6.45018 6.62367 6.90002 7.18592 7.31399 7.48436 8.80171 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.030742 B = 0.001323 C = 0.001313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.582980 B =21153.424943 C =21322.922851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.102 3.898 4 C -0.166 4.166 5 C -0.084 4.084 6 C -0.124 4.124 7 C -0.071 4.071 8 C -0.109 4.109 9 C -0.110 4.110 10 C -0.096 4.096 11 C -0.124 4.124 12 C 0.516 3.484 13 O -0.603 6.603 14 N -0.637 5.637 15 C 0.107 3.893 16 C 0.217 3.783 17 O -0.588 6.588 18 C -0.559 4.559 19 H 0.071 0.929 20 C 0.036 3.964 21 N -0.916 5.916 22 Si 0.967 3.033 23 H -0.282 1.282 24 H -0.267 1.267 25 H -0.277 1.277 26 C 0.094 3.906 27 C -0.087 4.087 28 C -0.212 4.212 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.388 0.612 47 H 0.276 0.724 48 H 0.094 0.906 49 H 0.071 0.929 50 H 0.138 0.862 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 -21.980 13.442 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.057 3.943 4 C -0.184 4.184 5 C -0.102 4.102 6 C -0.125 4.125 7 C -0.108 4.108 8 C -0.147 4.147 9 C -0.148 4.148 10 C -0.134 4.134 11 C -0.163 4.163 12 C 0.308 3.692 13 O -0.486 6.486 14 N -0.370 5.370 15 C -0.016 4.016 16 C 0.176 3.824 17 O -0.400 6.400 18 C -0.597 4.597 19 H 0.089 0.911 20 C -0.165 4.165 21 N -0.556 5.556 22 Si 0.792 3.208 23 H -0.207 1.207 24 H -0.192 1.192 25 H -0.202 1.202 26 C -0.029 4.029 27 C -0.105 4.105 28 C -0.230 4.230 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.118 0.882 46 H 0.243 0.757 47 H 0.086 0.914 48 H 0.112 0.888 49 H 0.090 0.910 50 H 0.156 0.844 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.908 -23.059 12.747 27.813 hybrid contribution 0.353 1.258 -0.122 1.312 sum -8.555 -21.801 12.625 26.606 Atomic orbital electron populations 1.23304 0.76667 1.05437 1.02089 1.86033 1.23310 1.27116 1.88901 1.19283 0.92852 0.84652 0.97523 1.20661 0.91685 0.99313 1.06753 1.21118 1.00778 0.90814 0.97465 1.20066 0.93822 0.95956 1.02623 1.20542 1.00957 0.92482 0.96835 1.21513 1.00434 0.96343 0.96361 1.21566 1.01725 0.96852 0.94638 1.21282 0.99903 0.94108 0.98121 1.21645 1.04194 0.99466 0.91043 1.21282 0.76462 0.78332 0.93111 1.90601 1.54626 1.54852 1.48535 1.50275 1.57021 1.18222 1.11491 1.23437 0.99693 0.88785 0.89678 1.20130 0.82569 0.88864 0.90833 1.86047 1.33088 1.48568 1.72338 1.21714 1.10203 1.04490 1.23244 0.91124 1.25713 0.98392 0.98981 0.93432 1.69369 1.35458 1.26120 1.24654 0.85462 0.79361 0.77927 0.78004 1.20706 1.19185 1.20209 1.24083 0.98400 0.83299 0.97076 1.21127 0.94380 0.97610 0.97378 1.21453 1.00925 0.92152 1.08501 0.86445 0.91770 0.92055 0.84740 0.83863 0.89962 0.90241 0.92704 0.92348 0.90423 0.90908 0.93191 0.92563 0.87151 0.88183 0.92751 0.88202 0.75660 0.91378 0.88828 0.91014 0.84449 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.98 10.50 -92.41 -0.97 -6.95 16 3 C 0.10 1.89 6.69 22.51 0.15 2.04 16 4 C -0.17 -2.96 9.99 22.37 0.22 -2.74 16 5 C -0.08 -1.36 9.69 22.25 0.22 -1.15 16 6 C -0.12 -2.03 5.13 -19.85 -0.10 -2.13 16 7 C -0.07 -0.98 5.34 29.84 0.16 -0.82 16 8 C -0.11 -1.81 5.20 30.59 0.16 -1.65 16 9 C -0.11 -1.93 5.21 30.60 0.16 -1.77 16 10 C -0.10 -2.42 4.50 30.60 0.14 -2.28 16 11 C -0.12 -3.49 5.45 29.85 0.16 -3.33 16 12 C 0.52 20.50 8.06 87.66 0.71 21.21 16 13 O -0.60 -28.03 16.71 -3.04 -0.05 -28.08 16 14 N -0.64 -26.55 3.61 -840.31 -3.03 -29.58 16 15 C 0.11 4.72 8.23 86.48 0.71 5.43 16 16 C 0.22 10.33 1.44 -10.89 -0.02 10.31 16 17 O -0.59 -30.46 13.48 -148.98 -2.01 -32.47 16 18 C -0.56 -27.53 8.62 25.60 0.22 -27.31 16 19 H 0.07 3.39 7.81 -2.91 -0.02 3.36 16 20 C 0.04 1.72 5.40 84.66 0.46 2.17 16 21 N -0.92 -45.11 11.09 21.45 0.24 -44.87 16 22 Si 0.97 38.64 29.54 68.60 2.03 40.66 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 25 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 26 C 0.09 3.86 8.00 86.47 0.69 4.55 16 27 C -0.09 -1.39 9.69 22.25 0.22 -1.18 16 28 C -0.21 -3.43 9.04 22.36 0.20 -3.22 16 29 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 31 H 0.06 0.49 7.66 -2.39 -0.02 0.48 16 32 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.08 0.97 8.08 -2.38 -0.02 0.95 16 35 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.43 8.10 -2.38 -0.02 1.41 16 41 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 42 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.10 2.63 8.14 -2.39 -0.02 2.62 16 44 H 0.05 2.51 8.14 -2.39 -0.02 2.50 16 45 H 0.10 4.02 8.09 -2.38 -0.02 4.00 16 46 H 0.39 20.21 6.46 -74.06 -0.48 19.73 16 47 H 0.28 12.92 8.31 -92.71 -0.77 12.15 16 48 H 0.09 3.60 8.09 -2.39 -0.02 3.58 16 49 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 50 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 51 H 0.14 1.68 6.30 -2.91 -0.02 1.66 16 Total: -1.00 -63.21 421.94 2.20 -61.00 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: 0.43 Total: 40.86 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 5.57 Total: -0.58 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -2.79 Total: -74.45 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: -3.03 Total: -67.50 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.66 kcal Total: -63.21 2.20 -61.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193979956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.608 kcal (2) G-P(sol) polarization free energy of solvation -63.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds