Wall clock time and date at job start Wed Apr 1 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00443 * 2 1 4 4 O 1.21281 * 119.99912 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99841 * 0.02562 * 3 2 1 6 6 C 1.50700 * 109.47356 * 179.97438 * 5 3 2 7 7 C 1.38302 * 119.93257 * 269.73135 * 6 5 3 8 8 C 1.38097 * 120.07068 * 180.27773 * 7 6 5 9 9 C 1.38886 * 119.93010 * 0.02562 * 8 7 6 10 10 O 1.35745 * 120.07023 * 179.97438 * 9 8 7 11 11 C 1.34823 * 117.00094 * 174.81145 * 10 9 8 12 12 H 1.07998 * 120.00295 * 5.01737 * 11 10 9 13 13 C 1.38654 * 120.00065 * 185.02524 * 11 10 9 14 14 N 1.31558 * 120.00380 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00169 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47313 * 89.99909 * 15 13 11 17 17 H 1.48504 * 109.47347 * 210.00355 * 15 13 11 18 18 H 1.48510 * 109.46678 * 329.99837 * 15 13 11 19 19 C 1.38874 * 119.85927 * 359.97438 * 9 8 7 20 20 C 1.38103 * 119.93562 * 359.97438 * 19 9 8 21 21 C 1.46507 * 119.99685 * 180.02562 * 2 1 3 22 22 C 1.52994 * 109.47370 * 120.81816 * 21 2 1 23 23 C 1.53010 * 109.47158 * 300.00290 * 22 21 2 24 24 C 1.53003 * 109.46593 * 299.99527 * 23 22 21 25 25 C 1.52998 * 109.46622 * 179.97438 * 24 23 22 26 26 O 1.42902 * 109.47179 * 65.00651 * 25 24 23 27 27 C 1.53003 * 109.47058 * 60.00220 * 24 23 22 28 28 C 1.53001 * 109.47045 * 0.81646 * 21 2 1 29 29 H 1.08999 * 109.47498 * 84.06017 * 1 2 3 30 30 H 1.08999 * 109.47240 * 204.06851 * 1 2 3 31 31 H 1.09007 * 109.46678 * 324.05947 * 1 2 3 32 32 H 1.09010 * 109.47414 * 59.99880 * 5 3 2 33 33 H 1.08998 * 109.47148 * 299.99920 * 5 3 2 34 34 H 1.08004 * 119.96639 * 0.24769 * 7 6 5 35 35 H 1.07999 * 120.03855 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00545 * 179.97438 * 14 13 11 37 37 H 1.08005 * 120.03145 * 179.97438 * 19 9 8 38 38 H 1.07996 * 119.96653 * 180.02562 * 20 19 9 39 39 H 1.08999 * 109.47088 * 240.82283 * 21 2 1 40 40 H 1.09004 * 109.46820 * 59.99885 * 22 21 2 41 41 H 1.08992 * 109.47490 * 179.97438 * 22 21 2 42 42 H 1.09004 * 109.46949 * 180.02562 * 23 22 21 43 43 H 1.08992 * 109.47180 * 59.99492 * 23 22 21 44 44 H 1.08993 * 109.47586 * 300.00357 * 24 23 22 45 45 H 1.09005 * 109.46728 * 185.00025 * 25 24 23 46 46 H 1.08995 * 109.47839 * 305.00116 * 25 24 23 47 47 H 0.96696 * 114.00113 * 179.97438 * 26 25 24 48 48 H 1.08993 * 109.47341 * 179.97438 * 27 24 23 49 49 H 1.09003 * 109.46858 * 59.99717 * 27 24 23 50 50 H 1.09002 * 109.46893 * 179.97438 * 28 21 2 51 51 H 1.09000 * 109.47276 * 300.00135 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1670 -0.0005 5 6 1.3855 2.4722 0.0006 6 6 2.3648 3.6176 0.0011 7 6 2.8090 4.1453 1.1999 8 6 3.7020 5.1987 1.2036 9 6 4.1536 5.7286 0.0019 10 8 5.0310 6.7644 0.0023 11 6 5.5113 7.1601 -1.1937 12 1 5.1349 6.7128 -2.1017 13 6 6.4888 8.1414 -1.2579 14 7 6.9579 8.5273 -2.4249 15 14 7.1397 8.9157 0.3125 16 1 8.3051 8.1366 0.8024 17 1 7.5588 10.3138 0.0385 18 1 6.0725 8.9123 1.3452 19 6 3.7057 5.1965 -1.2001 20 6 2.8135 4.1424 -1.1973 21 6 2.1975 -1.2688 -0.0006 22 6 3.0924 -1.3405 -1.2393 23 6 2.2283 -1.2499 -2.4988 24 6 1.2342 -2.4127 -2.5199 25 6 0.3697 -2.3217 -3.7790 26 8 1.1903 -2.5050 -4.9345 27 6 0.3392 -2.3410 -1.2810 28 6 1.2033 -2.4316 -0.0216 29 1 -0.3634 0.1063 -1.0221 30 1 -0.3634 -0.9383 0.4191 31 1 -0.3633 0.8321 0.6032 32 1 0.7591 2.5298 0.8909 33 1 0.7585 2.5302 -0.8891 34 1 2.4568 3.7334 2.1341 35 1 4.0488 5.6100 2.1401 36 1 7.6415 9.2140 -2.4699 37 1 4.0548 5.6067 -2.1363 38 1 2.4652 3.7280 -2.1317 39 1 2.8130 -1.3334 0.8967 40 1 3.8007 -0.5121 -1.2243 41 1 3.6377 -2.2843 -1.2395 42 1 2.8660 -1.3014 -3.3814 43 1 1.6834 -0.3060 -2.4984 44 1 1.7791 -3.3567 -2.5203 45 1 -0.3962 -3.0969 -3.7506 46 1 -0.1063 -1.3422 -3.8230 47 1 0.7073 -2.4600 -5.7710 48 1 -0.3694 -3.1691 -1.2962 49 1 -0.2058 -1.3970 -1.2807 50 1 1.7482 -3.3756 -0.0225 51 1 0.5656 -2.3805 0.8609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269459855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:37 Heat of formation + Delta-G solvation = -79.458613 kcal Electronic energy + Delta-G solvation = -30985.566152 eV Core-core repulsion = 26850.981037 eV Total energy + Delta-G solvation = -4134.585115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.89186 -39.22811 -38.43530 -37.01202 -36.43202 -34.58665 -32.51390 -32.02677 -31.35265 -30.66904 -30.16795 -27.26386 -26.92707 -25.28170 -24.67609 -22.98609 -22.07089 -21.80424 -20.77715 -20.01764 -18.77719 -17.83364 -17.67491 -17.20064 -16.91292 -16.41955 -15.89878 -15.35236 -15.24229 -14.79710 -14.64684 -14.32031 -14.23694 -13.91526 -13.78625 -13.65362 -13.39980 -13.25942 -13.02719 -12.67416 -12.59602 -12.53273 -12.37802 -12.26894 -12.18109 -12.11741 -11.79174 -11.59044 -11.24287 -11.19403 -10.85478 -10.70837 -10.64726 -10.62298 -10.54789 -10.44191 -10.17783 -10.10857 -9.43025 -9.32632 -8.80663 -8.65780 -8.17186 -7.24113 -6.36524 -4.02755 2.21649 2.22149 2.79693 2.97699 3.25726 3.30032 3.44196 3.82438 4.28341 4.28499 4.41467 4.48996 4.57466 4.68329 4.79960 4.90081 4.92373 4.99322 5.02309 5.04672 5.14821 5.16337 5.17049 5.21496 5.27206 5.29808 5.34157 5.37933 5.41387 5.45081 5.61695 5.66165 5.71885 5.74201 5.81352 5.86695 5.93047 6.14063 6.16869 6.19341 6.27775 6.39378 6.56882 6.62919 6.85812 7.08392 7.28612 7.28935 7.37069 7.37896 7.67990 7.86266 8.09639 8.34702 8.99013 9.62171 10.71306 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.002235 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.932309 B =12524.641906 C =13362.458052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.617 5.617 3 C 0.511 3.489 4 O -0.515 6.515 5 C -0.080 4.080 6 C -0.160 4.160 7 C -0.062 4.062 8 C -0.191 4.191 9 C 0.162 3.838 10 O -0.219 6.219 11 C -0.388 4.388 12 H 0.106 0.894 13 C 0.063 3.937 14 N -0.881 5.881 15 Si 0.905 3.095 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.260 1.260 19 C -0.219 4.219 20 C -0.058 4.058 21 C 0.152 3.848 22 C -0.139 4.139 23 C -0.103 4.103 24 C -0.085 4.085 25 C 0.080 3.920 26 O -0.572 6.572 27 C -0.140 4.140 28 C -0.123 4.123 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.279 0.721 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.044 0.956 47 H 0.378 0.622 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.077 0.923 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.145 -23.663 2.372 30.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.354 5.354 3 C 0.300 3.700 4 O -0.389 6.389 5 C -0.120 4.120 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.210 4.210 9 C 0.110 3.890 10 O -0.124 6.124 11 C -0.464 4.464 12 H 0.124 0.876 13 C -0.140 4.140 14 N -0.519 5.519 15 Si 0.731 3.269 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.184 1.184 19 C -0.238 4.238 20 C -0.076 4.076 21 C 0.050 3.950 22 C -0.177 4.177 23 C -0.140 4.140 24 C -0.104 4.104 25 C 0.003 3.997 26 O -0.377 6.377 27 C -0.177 4.177 28 C -0.161 4.161 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.108 0.892 50 H 0.096 0.904 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.756 -23.422 2.898 29.534 hybrid contribution -0.181 0.290 -0.093 0.355 sum -17.937 -23.132 2.805 29.405 Atomic orbital electron populations 1.22115 0.80634 1.03326 1.01263 1.47978 1.06355 1.05730 1.75324 1.20924 0.88374 0.84879 0.75861 1.90710 1.13898 1.86941 1.47364 1.20469 0.97470 0.90436 1.03598 1.18723 1.04076 0.99640 0.93666 1.20385 0.96158 0.95086 0.96396 1.20142 1.04034 1.00893 0.95966 1.19112 0.89539 0.86981 0.93390 1.83566 1.52707 1.42341 1.33754 1.20771 1.20978 1.21729 0.82876 0.87647 1.24462 0.95299 0.96169 0.98102 1.69648 1.28453 1.30202 1.23638 0.86184 0.79839 0.78079 0.82810 1.19893 1.20828 1.18376 1.21219 1.03043 1.00880 0.98661 1.20549 0.95772 0.94982 0.96295 1.20944 0.92880 0.82552 0.98661 1.21978 0.98661 1.03378 0.93725 1.21406 0.97396 0.97318 0.97920 1.21144 0.96605 1.00250 0.92391 1.22231 0.92516 0.99095 0.85889 1.86503 1.38971 1.95854 1.16371 1.22167 0.98073 1.03815 0.93633 1.21793 0.98040 0.98243 0.97988 0.92368 0.90038 0.91418 0.89091 0.89158 0.87296 0.86601 0.91111 0.85010 0.87653 0.90973 0.89238 0.91565 0.91470 0.92281 0.90795 0.93988 0.93774 0.77564 0.91897 0.89248 0.90429 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 8.00 59.85 0.48 0.89 16 2 N -0.62 -6.08 2.25 -173.93 -0.39 -6.47 16 3 C 0.51 6.99 7.38 -10.99 -0.08 6.90 16 4 O -0.52 -9.47 14.08 5.56 0.08 -9.40 16 5 C -0.08 -0.99 4.46 -29.04 -0.13 -1.12 16 6 C -0.16 -2.74 4.38 -104.57 -0.46 -3.20 16 7 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 8 C -0.19 -3.99 9.99 -39.39 -0.39 -4.38 16 9 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 10 O -0.22 -5.98 8.59 0.08 0.00 -5.98 16 11 C -0.39 -11.27 9.95 30.89 0.31 -10.96 16 12 H 0.11 3.13 5.43 -52.49 -0.29 2.84 16 13 C 0.06 1.80 5.49 -17.52 -0.10 1.71 16 14 N -0.88 -26.06 13.96 55.48 0.77 -25.28 16 15 Si 0.91 22.26 28.62 -169.99 -4.86 17.39 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.26 -6.39 7.11 56.52 0.40 -5.98 16 19 C -0.22 -4.96 9.17 -39.40 -0.36 -5.32 16 20 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 21 C 0.15 1.47 2.95 -67.93 -0.20 1.27 16 22 C -0.14 -1.56 5.23 -26.73 -0.14 -1.70 16 23 C -0.10 -1.07 4.94 -26.72 -0.13 -1.21 16 24 C -0.09 -0.67 2.43 -90.62 -0.22 -0.89 16 25 C 0.08 0.57 6.43 37.16 0.24 0.81 16 26 O -0.57 -4.88 13.19 -35.23 -0.46 -5.34 16 27 C -0.14 -0.81 4.54 -26.73 -0.12 -0.93 16 28 C -0.12 -0.78 4.91 -26.73 -0.13 -0.91 16 29 H 0.06 0.31 6.70 -51.93 -0.35 -0.04 16 30 H 0.08 0.35 4.95 -51.93 -0.26 0.10 16 31 H 0.07 0.35 6.69 -51.93 -0.35 0.00 16 32 H 0.09 0.89 7.36 -51.92 -0.38 0.51 16 33 H 0.09 0.93 8.05 -51.93 -0.42 0.52 16 34 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 35 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.13 3.13 5.64 -52.48 -0.30 2.83 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.33 6.11 -51.93 -0.32 1.01 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 43 H 0.06 0.67 7.60 -51.93 -0.39 0.27 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.38 1.55 9.12 45.56 0.42 1.97 16 48 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.09 0.48 3.66 -51.93 -0.19 0.29 16 50 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.37 6.89 -51.93 -0.36 0.01 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -34.89 393.78 -8.35 -43.23 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.95 Total: 4.29 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -2.47 Total: -18.38 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.38 Total: -31.76 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.39 Total: -20.71 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.86 Total: 17.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.89 -8.35 -43.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269459855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.227 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds