Wall clock time and date at job start Wed Apr 1 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34774 * 119.99752 * 2 1 4 4 O 1.21279 * 119.99762 * 179.72637 * 3 2 1 5 5 C 1.50708 * 120.00114 * 359.72625 * 3 2 1 6 6 C 1.50695 * 109.46824 * 180.02562 * 5 3 2 7 7 C 1.38325 * 119.96184 * 269.71741 * 6 5 3 8 8 C 1.38284 * 120.13371 * 179.77136 * 7 6 5 9 9 C 1.38119 * 120.07204 * 0.51197 * 8 7 6 10 10 C 1.38858 * 119.92860 * 359.74218 * 9 8 7 11 11 O 1.35749 * 120.06810 * 179.97438 * 10 9 8 12 12 C 1.34831 * 117.00161 * 354.49395 * 11 10 9 13 13 H 1.07995 * 119.99758 * 5.05239 * 12 11 10 14 14 C 1.38649 * 120.00022 * 185.05609 * 12 11 10 15 15 N 1.31556 * 120.00182 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00049 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46782 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46966 * 119.99501 * 16 14 12 19 19 H 1.48497 * 109.47322 * 239.99951 * 16 14 12 20 20 C 1.38076 * 119.97038 * 90.00082 * 6 5 3 21 21 C 1.46500 * 119.99942 * 179.72723 * 2 1 3 22 22 C 1.52992 * 109.47459 * 60.27405 * 21 2 1 23 23 C 1.53001 * 109.47472 * 179.97438 * 22 21 2 24 24 C 1.53000 * 109.46864 * 60.00126 * 23 22 21 25 25 C 1.52996 * 109.47024 * 180.02562 * 24 23 22 26 26 O 1.42901 * 109.47000 * 294.99281 * 25 24 23 27 27 C 1.53006 * 109.46881 * 300.00148 * 24 23 22 28 28 C 1.52996 * 109.47009 * 60.00336 * 27 24 23 29 29 H 1.08998 * 109.46848 * 89.99983 * 1 2 3 30 30 H 1.08996 * 109.46824 * 209.99769 * 1 2 3 31 31 H 1.08992 * 109.46931 * 330.00252 * 1 2 3 32 32 H 1.09005 * 109.46548 * 299.99848 * 5 3 2 33 33 H 1.08994 * 109.47018 * 59.99549 * 5 3 2 34 34 H 1.07996 * 119.93352 * 0.02562 * 7 6 5 35 35 H 1.08008 * 119.96234 * 180.26148 * 8 7 6 36 36 H 1.07997 * 120.03366 * 179.76943 * 9 8 7 37 37 H 0.97004 * 119.99654 * 180.02562 * 15 14 12 38 38 H 1.08001 * 120.03133 * 359.95169 * 20 6 5 39 39 H 1.09001 * 109.46605 * 180.27570 * 21 2 1 40 40 H 1.09009 * 109.47178 * 300.00015 * 22 21 2 41 41 H 1.09003 * 109.47488 * 59.99621 * 22 21 2 42 42 H 1.09001 * 109.46710 * 300.00237 * 23 22 21 43 43 H 1.08991 * 109.47251 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.47615 * 59.99862 * 24 23 22 45 45 H 1.08994 * 109.47460 * 54.99757 * 25 24 23 46 46 H 1.09004 * 109.47028 * 175.00289 * 25 24 23 47 47 H 0.96703 * 113.99819 * 179.97438 * 26 25 24 48 48 H 1.08995 * 109.47217 * 299.99958 * 27 24 23 49 49 H 1.09000 * 109.46664 * 180.02562 * 27 24 23 50 50 H 1.09005 * 109.46797 * 180.02562 * 28 27 24 51 51 H 1.08995 * 109.47441 * 60.00316 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0050 5 6 1.3853 2.4724 -0.0062 6 6 2.3646 3.6177 -0.0056 7 6 2.8046 4.1498 1.1931 8 6 3.7068 5.1977 1.1979 9 6 4.1634 5.7234 0.0051 10 6 3.7196 5.1949 -1.1999 11 8 4.1661 5.7097 -2.3739 12 6 4.9491 6.8051 -2.3036 13 1 5.2612 7.1849 -1.3420 14 6 5.3534 7.4440 -3.4658 15 7 4.9736 6.9811 -4.6372 16 14 6.4377 8.9621 -3.3684 17 1 6.7231 9.2759 -1.9453 18 1 7.7136 8.7058 -4.0837 19 1 5.7388 10.1108 -3.9986 20 6 2.8174 4.1389 -1.2014 21 6 2.1976 -1.2687 0.0060 22 6 1.8332 -2.0740 -1.2427 23 6 2.5987 -3.3987 -1.2367 24 6 2.2244 -4.1983 0.0129 25 6 2.9903 -5.5227 0.0192 26 8 2.5643 -6.3246 -1.0842 27 6 2.5888 -3.3929 1.2617 28 6 1.8233 -2.0683 1.2556 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 0.7624 2.5279 -0.8990 33 1 0.7550 2.5321 0.8809 34 1 2.4459 3.7432 2.1271 35 1 4.0517 5.6083 2.1355 36 1 4.8651 6.5443 0.0095 37 1 5.2568 7.4279 -5.4503 38 1 2.4705 3.7255 -2.1369 39 1 3.2692 -1.0694 0.0100 40 1 0.7615 -2.2732 -1.2467 41 1 2.1001 -1.5046 -2.1330 42 1 3.6702 -3.1991 -1.2330 43 1 2.3387 -3.9726 -2.1261 44 1 1.1529 -4.3979 0.0092 45 1 4.0587 -5.3250 -0.0664 46 1 2.7923 -6.0525 0.9510 47 1 3.0095 -7.1810 -1.1431 48 1 3.6603 -3.1934 1.2655 49 1 2.3226 -3.9628 2.1519 50 1 2.0833 -1.4944 2.1451 51 1 0.7518 -2.2678 1.2520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270511342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:40 Heat of formation + Delta-G solvation = -129.303161 kcal Electronic energy + Delta-G solvation = -30208.510504 eV Core-core repulsion = 26071.763967 eV Total energy + Delta-G solvation = -4136.746537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.46175 -40.67755 -39.60415 -38.23059 -37.47045 -35.88812 -34.35285 -33.55644 -31.85330 -31.65227 -30.83896 -28.55055 -27.83437 -27.28755 -25.91685 -23.71211 -23.33718 -22.97920 -22.00835 -20.75717 -20.20322 -19.41534 -18.74719 -18.24312 -17.97693 -17.30226 -16.89168 -16.66963 -16.13289 -16.09310 -16.01003 -15.80297 -15.48418 -15.16013 -15.03715 -14.78708 -14.47147 -14.34131 -14.05254 -14.00489 -13.93164 -13.60278 -13.36367 -13.15491 -13.10798 -12.98019 -12.91919 -12.76050 -12.48791 -12.34521 -12.23326 -12.12452 -12.08612 -12.08250 -11.54278 -11.31285 -11.24661 -11.20819 -10.86140 -10.80217 -10.75795 -9.63882 -9.58907 -8.98523 -8.47856 -6.16519 0.51318 0.74934 1.33137 1.42243 1.52309 1.65291 2.03847 2.17016 2.82800 3.15614 3.32906 3.42916 3.60411 3.72157 3.80093 3.96323 3.96967 4.09173 4.10166 4.27645 4.31065 4.33221 4.37701 4.41489 4.42756 4.51813 4.54338 4.56985 4.59396 4.65488 4.70023 4.72726 4.80353 4.83983 4.93835 5.01861 5.06671 5.10399 5.12431 5.15077 5.16445 5.22962 5.29816 5.40337 5.48723 5.63843 5.66139 5.72004 5.74750 6.02247 6.21929 6.41654 6.92274 6.96600 7.23206 7.78471 8.76037 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.001984 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.158770 B =14107.307293 C =14961.503239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.611 5.611 3 C 0.511 3.489 4 O -0.582 6.582 5 C -0.088 4.088 6 C -0.026 4.026 7 C -0.180 4.180 8 C -0.073 4.073 9 C -0.246 4.246 10 C 0.111 3.889 11 O -0.235 6.235 12 C -0.413 4.413 13 H 0.101 0.899 14 C -0.026 4.026 15 N -0.923 5.923 16 Si 1.022 2.978 17 H -0.251 1.251 18 H -0.269 1.269 19 H -0.265 1.265 20 C -0.194 4.194 21 C 0.136 3.864 22 C -0.119 4.119 23 C -0.105 4.105 24 C -0.084 4.084 25 C 0.078 3.922 26 O -0.594 6.594 27 C -0.107 4.107 28 C -0.115 4.115 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.118 0.882 37 H 0.272 0.728 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.063 0.937 47 H 0.395 0.605 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.063 0.937 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 -23.839 15.491 30.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.343 5.343 3 C 0.300 3.700 4 O -0.462 6.462 5 C -0.127 4.127 6 C -0.026 4.026 7 C -0.198 4.198 8 C -0.091 4.091 9 C -0.266 4.266 10 C 0.062 3.938 11 O -0.142 6.142 12 C -0.490 4.490 13 H 0.118 0.882 14 C -0.223 4.223 15 N -0.561 5.561 16 Si 0.841 3.159 17 H -0.175 1.175 18 H -0.194 1.194 19 H -0.190 1.190 20 C -0.213 4.213 21 C 0.033 3.967 22 C -0.158 4.158 23 C -0.143 4.143 24 C -0.102 4.102 25 C 0.000 4.000 26 O -0.402 6.402 27 C -0.145 4.145 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.245 0.755 48 H 0.076 0.924 49 H 0.107 0.893 50 H 0.082 0.918 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.848 -23.358 14.950 30.157 hybrid contribution 1.330 0.391 -0.696 1.551 sum -10.517 -22.968 14.254 29.005 Atomic orbital electron populations 1.22143 0.77005 1.05374 1.03210 1.48020 1.08526 1.04733 1.73050 1.20999 0.87583 0.86320 0.75088 1.90726 1.16491 1.87827 1.51124 1.20730 0.96846 0.87680 1.07461 1.19218 0.96562 0.95050 0.91792 1.20965 1.01885 0.99436 0.97552 1.21142 0.95535 0.95529 0.96887 1.21290 1.07030 1.05523 0.92728 1.19876 0.93340 0.93951 0.86677 1.83938 1.60892 1.42216 1.27170 1.21874 1.27759 1.03757 0.95564 0.88199 1.26647 0.99601 1.02638 0.93423 1.70204 1.45624 1.41890 0.98389 0.84496 0.76748 0.75095 0.79605 1.17474 1.19394 1.19016 1.20200 1.02572 0.99863 0.98695 1.21104 0.96628 0.82729 0.96276 1.21806 1.01714 0.95790 0.96475 1.21439 0.99341 0.94751 0.98759 1.21150 1.01095 0.93278 0.94674 1.22267 0.97340 0.91317 0.89051 1.86431 1.68814 1.34227 1.50740 1.21459 1.00209 0.95079 0.97712 1.21781 1.01902 0.95549 0.96120 0.91796 0.88691 0.88801 0.86495 0.83843 0.83482 0.83582 0.86412 0.91857 0.87899 0.91904 0.89773 0.93833 0.93247 0.91569 0.89973 0.93664 0.91914 0.75531 0.92427 0.89280 0.91844 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 9.31 127.77 1.19 1.89 16 2 N -0.61 -12.63 2.76 -822.60 -2.27 -14.90 16 3 C 0.51 14.97 7.67 87.66 0.67 15.64 16 4 O -0.58 -23.90 15.36 -3.02 -0.05 -23.95 16 5 C -0.09 -2.20 4.39 29.10 0.13 -2.08 16 6 C -0.03 -0.94 4.37 -19.88 -0.09 -1.02 16 7 C -0.18 -6.12 9.70 22.30 0.22 -5.90 16 8 C -0.07 -2.74 10.04 22.25 0.22 -2.52 16 9 C -0.25 -11.68 9.17 22.39 0.21 -11.48 16 10 C 0.11 6.05 6.65 22.58 0.15 6.20 16 11 O -0.24 -15.12 9.76 -22.74 -0.22 -15.34 16 12 C -0.41 -25.41 9.49 67.92 0.64 -24.77 16 13 H 0.10 5.67 5.20 -2.91 -0.02 5.65 16 14 C -0.03 -1.56 5.49 84.83 0.47 -1.09 16 15 N -0.92 -58.89 13.67 21.61 0.30 -58.60 16 16 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 17 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 C -0.19 -9.12 9.64 22.39 0.22 -8.91 16 21 C 0.14 2.79 2.52 44.99 0.11 2.90 16 22 C -0.12 -2.22 5.21 30.59 0.16 -2.06 16 23 C -0.10 -1.83 5.10 30.59 0.16 -1.67 16 24 C -0.08 -1.08 2.43 -10.79 -0.03 -1.11 16 25 C 0.08 0.88 6.43 71.98 0.46 1.34 16 26 O -0.59 -7.86 13.20 -148.98 -1.97 -9.82 16 27 C -0.11 -1.26 5.20 30.59 0.16 -1.11 16 28 C -0.12 -1.59 5.18 30.59 0.16 -1.43 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.62 6.41 -2.39 -0.02 0.60 16 31 H 0.09 0.69 6.44 -2.39 -0.02 0.67 16 32 H 0.12 2.54 8.05 -2.38 -0.02 2.52 16 33 H 0.14 2.28 7.33 -2.39 -0.02 2.26 16 34 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 35 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.12 5.62 5.64 -2.91 -0.02 5.61 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.06 1.80 6.90 -2.39 -0.02 1.78 16 40 H 0.08 1.22 7.68 -2.38 -0.02 1.21 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.24 7.82 -2.39 -0.02 1.22 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 47 H 0.40 1.81 9.12 -74.06 -0.68 1.13 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 51 H 0.09 0.84 6.65 -2.39 -0.02 0.83 16 Total: -1.00 -88.29 406.62 3.28 -85.00 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.26 Total: 28.01 kcal Atomic # 6 Polarization: -42.36 SS G_CDS: 5.21 Total: -37.15 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.98 Total: -73.50 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -2.23 Total: -49.11 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -88.29 3.28 -85.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270511342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.302 kcal (2) G-P(sol) polarization free energy of solvation -88.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds