Wall clock time and date at job start Wed Apr 1 2020 04:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99989 * 2 1 4 4 H 1.08996 * 112.90506 * 18.75042 * 3 2 1 5 5 C 1.53778 * 113.61442 * 247.49857 * 3 2 1 6 6 H 1.08997 * 113.61546 * 25.43120 * 5 3 2 7 7 C 1.52998 * 113.61748 * 156.33883 * 5 3 2 8 8 C 1.53785 * 87.07920 * 270.88349 * 5 3 2 9 9 H 1.08998 * 113.68960 * 220.00351 * 8 5 3 10 10 N 1.46505 * 113.61143 * 89.11583 * 8 5 3 11 11 C 1.34779 * 119.99883 * 107.50496 * 10 8 5 12 12 O 1.21281 * 120.00227 * 359.97438 * 11 10 8 13 13 C 1.50704 * 120.00032 * 179.97438 * 11 10 8 14 14 C 1.50702 * 109.46907 * 179.97438 * 13 11 10 15 15 C 1.38317 * 119.96658 * 90.00336 * 14 13 11 16 16 C 1.38287 * 120.13926 * 179.97438 * 15 14 13 17 17 C 1.38122 * 120.06678 * 0.02562 * 16 15 14 18 18 C 1.38862 * 119.93122 * 0.02562 * 17 16 15 19 19 O 1.35747 * 120.06670 * 179.97438 * 18 17 16 20 20 C 1.34829 * 117.00107 * 4.94828 * 19 18 17 21 21 H 1.07994 * 120.00200 * 354.94133 * 20 19 18 22 22 C 1.38655 * 120.00028 * 174.94435 * 20 19 18 23 23 N 1.31557 * 120.00147 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99961 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46902 * 89.99977 * 24 22 20 26 26 H 1.48499 * 109.47072 * 210.00288 * 24 22 20 27 27 H 1.48508 * 109.46960 * 330.00322 * 24 22 20 28 28 C 1.38077 * 119.96349 * 270.01702 * 14 13 11 29 29 C 1.53778 * 87.08135 * 334.56793 * 8 5 3 30 30 C 1.53004 * 113.61390 * 139.98198 * 29 8 5 31 31 C 1.52998 * 113.61245 * 270.88296 * 29 8 5 32 32 H 1.09003 * 109.46828 * 300.00061 * 1 2 3 33 33 H 1.08998 * 109.47159 * 59.99707 * 1 2 3 34 34 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.47272 * 128.76114 * 7 5 3 36 36 H 1.08998 * 109.47082 * 248.76070 * 7 5 3 37 37 H 1.08997 * 109.46705 * 8.75757 * 7 5 3 38 38 H 0.96999 * 120.00258 * 287.49529 * 10 8 5 39 39 H 1.08997 * 109.46989 * 59.99780 * 13 11 10 40 40 H 1.08997 * 109.47202 * 299.99865 * 13 11 10 41 41 H 1.07996 * 119.93066 * 359.71551 * 15 14 13 42 42 H 1.08000 * 119.96363 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.03570 * 180.02562 * 17 16 15 44 44 H 0.96994 * 119.99845 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.03588 * 0.03204 * 28 14 13 46 46 H 1.08995 * 109.47125 * 59.99491 * 30 29 8 47 47 H 1.08994 * 109.47286 * 180.02562 * 30 29 8 48 48 H 1.09000 * 109.47056 * 299.99962 * 30 29 8 49 49 H 1.08997 * 109.47191 * 51.20963 * 31 29 8 50 50 H 1.09004 * 109.46900 * 171.20884 * 31 29 8 51 51 H 1.09000 * 109.46983 * 291.20613 * 31 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3143 2.0797 0.3227 5 6 2.7534 1.6489 -1.3017 6 1 2.3927 1.0964 -2.1693 7 6 2.8735 3.1520 -1.5607 8 6 4.0061 1.0330 -0.6565 9 1 4.9222 1.5863 -0.8632 10 7 4.1436 -0.4054 -0.8977 11 6 5.0852 -0.8591 -1.7487 12 8 5.8184 -0.0764 -2.3151 13 6 5.2270 -2.3388 -1.9965 14 6 6.3429 -2.5787 -2.9806 15 6 7.6361 -2.7653 -2.5267 16 6 8.6626 -2.9862 -3.4266 17 6 8.3993 -3.0205 -4.7820 18 6 7.1022 -2.8324 -5.2408 19 8 6.8404 -2.8651 -6.5724 20 6 7.8636 -3.1859 -7.3898 21 1 8.8555 -3.3225 -6.9852 22 6 7.6423 -3.3405 -8.7498 23 7 8.6405 -3.6540 -9.5472 24 14 5.9263 -3.1049 -9.4496 25 1 5.7392 -1.6826 -9.8330 26 1 5.7575 -3.9668 -10.6470 27 1 4.9183 -3.4781 -8.4248 28 6 6.0732 -2.6116 -4.3344 29 6 3.3756 1.3719 0.7045 30 6 3.5741 0.2824 1.7603 31 6 3.7343 2.7687 1.2154 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 3.9135 3.4029 -1.7691 36 1 2.2557 3.4237 -2.4167 37 1 2.5367 3.7003 -0.6809 38 1 3.5571 -1.0314 -0.4449 39 1 4.2943 -2.7302 -2.4027 40 1 5.4548 -2.8442 -1.0580 41 1 7.8452 -2.7343 -1.4677 42 1 9.6714 -3.1312 -3.0691 43 1 9.2013 -3.1935 -5.4843 44 1 8.4856 -3.7624 -10.4986 45 1 5.0634 -2.4650 -4.6882 46 1 4.6402 0.1265 1.9254 47 1 3.1027 0.5905 2.6935 48 1 3.1206 -0.6462 1.4138 49 1 3.5316 3.5037 0.4365 50 1 3.1349 2.9984 2.0965 51 1 4.7919 2.7992 1.4774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271957021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:50 Heat of formation + Delta-G solvation = -57.318315 kcal Electronic energy + Delta-G solvation = -30856.476339 eV Core-core repulsion = 26722.851299 eV Total energy + Delta-G solvation = -4133.625040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.37525 -39.45759 -38.63159 -36.91303 -36.47011 -33.54562 -32.35732 -32.08017 -31.95211 -29.38362 -28.59875 -27.44144 -27.13095 -26.38755 -25.13607 -24.49976 -21.76800 -21.29159 -21.05473 -20.04272 -19.04202 -17.63926 -17.22172 -17.00631 -16.64048 -16.13529 -15.96465 -15.63150 -15.31330 -15.05286 -14.57080 -14.24805 -14.02685 -13.77524 -13.71019 -13.62529 -13.37485 -13.27648 -13.10182 -12.72980 -12.66810 -12.53436 -12.49594 -12.38243 -12.23623 -12.09979 -11.71581 -11.66079 -11.47750 -11.24450 -11.20950 -10.76662 -10.72005 -10.67803 -10.62339 -10.34224 -10.09118 -9.68244 -9.64152 -9.31236 -8.92662 -8.80377 -8.05439 -7.27103 -6.34298 -4.00713 2.10262 2.37659 2.81202 3.03428 3.27367 3.30310 3.37379 3.45292 4.10404 4.15058 4.30120 4.37987 4.56184 4.61969 4.79061 4.81756 4.83346 4.97789 4.98684 5.05155 5.09733 5.13724 5.15131 5.26064 5.28688 5.32908 5.36906 5.42593 5.43228 5.52383 5.59728 5.65709 5.68310 5.71479 5.77848 5.85688 5.92930 5.96768 6.02255 6.08083 6.20541 6.34139 6.55712 6.61846 6.82671 6.87942 7.19090 7.30375 7.40173 7.60457 7.70574 7.88880 8.12200 8.41392 9.01488 9.65409 10.73689 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.002399 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.796298 B =11669.297371 C =12487.835308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.075 3.925 4 H 0.074 0.926 5 C -0.147 4.147 6 H 0.086 0.914 7 C -0.136 4.136 8 C 0.142 3.858 9 H 0.102 0.898 10 N -0.713 5.713 11 C 0.515 3.485 12 O -0.521 6.521 13 C -0.094 4.094 14 C -0.033 4.033 15 C -0.187 4.187 16 C -0.076 4.076 17 C -0.218 4.218 18 C 0.160 3.840 19 O -0.220 6.220 20 C -0.387 4.387 21 H 0.106 0.894 22 C 0.062 3.938 23 N -0.883 5.883 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.260 1.260 28 C -0.174 4.174 29 C -0.092 4.092 30 C -0.132 4.132 31 C -0.143 4.143 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.404 0.596 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.278 0.722 45 H 0.113 0.887 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.060 0.940 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.262 9.860 24.787 31.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C 0.016 3.984 4 H 0.092 0.908 5 C -0.167 4.167 6 H 0.104 0.896 7 C -0.193 4.193 8 C 0.036 3.964 9 H 0.120 0.880 10 N -0.366 5.366 11 C 0.302 3.698 12 O -0.396 6.396 13 C -0.134 4.134 14 C -0.034 4.034 15 C -0.206 4.206 16 C -0.095 4.095 17 C -0.237 4.237 18 C 0.109 3.891 19 O -0.126 6.126 20 C -0.463 4.463 21 H 0.123 0.877 22 C -0.140 4.140 23 N -0.521 5.521 24 Si 0.730 3.270 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.184 1.184 28 C -0.193 4.193 29 C -0.094 4.094 30 C -0.190 4.190 31 C -0.200 4.200 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.240 0.760 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.088 0.912 45 H 0.131 0.869 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.079 0.921 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.736 10.224 23.993 30.460 hybrid contribution -1.062 -0.055 -0.284 1.101 sum -16.797 10.170 23.709 30.785 Atomic orbital electron populations 1.22802 0.80689 1.02892 0.99970 1.87765 1.19794 1.26521 1.94436 1.23385 0.93929 0.85029 0.96011 0.90782 1.23385 0.97721 0.97237 0.98372 0.89576 1.21765 1.02912 0.93031 1.01624 1.21937 0.98002 0.82513 0.93968 0.88030 1.45697 1.36995 1.06984 1.46913 1.20749 0.79565 0.91189 0.78336 1.90747 1.43227 1.57893 1.47696 1.20582 0.99752 0.92689 1.00342 1.18662 0.93293 0.99232 0.92184 1.20416 0.92463 1.09445 0.98306 1.20732 0.97959 0.97941 0.92835 1.21289 0.97214 1.09245 0.95990 1.19007 0.92734 0.93337 0.84037 1.83566 1.38781 1.77832 1.12388 1.20767 0.89007 1.47900 0.88602 0.87664 1.24449 0.99118 0.95695 0.94764 1.69648 1.31261 1.46147 1.05063 0.86189 0.83698 0.78530 0.78535 1.19931 1.20891 1.18389 1.19938 0.97884 1.10292 0.91222 1.22461 0.94709 0.97175 0.95009 1.21540 1.01690 0.98349 0.97374 1.21900 1.02224 0.94208 1.01667 0.94056 0.93951 0.89444 0.91364 0.92239 0.91465 0.75957 0.88329 0.88373 0.87752 0.87213 0.85023 0.91165 0.86902 0.92386 0.92722 0.91434 0.90403 0.92050 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.37 -2.95 7.93 -35.23 -0.28 -3.23 16 3 C 0.07 0.57 3.36 -25.92 -0.09 0.48 16 4 H 0.07 0.47 7.63 -51.93 -0.40 0.08 16 5 C -0.15 -1.37 4.18 -89.81 -0.37 -1.74 16 6 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.14 -1.04 8.55 37.16 0.32 -0.72 16 8 C 0.14 1.49 3.40 -67.11 -0.23 1.26 16 9 H 0.10 1.27 7.17 -51.93 -0.37 0.90 16 10 N -0.71 -7.98 4.66 -53.01 -0.25 -8.23 16 11 C 0.52 7.59 7.82 -10.98 -0.09 7.50 16 12 O -0.52 -10.16 15.63 5.56 0.09 -10.07 16 13 C -0.09 -1.26 5.83 -29.03 -0.17 -1.43 16 14 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 15 C -0.19 -3.40 9.70 -39.53 -0.38 -3.78 16 16 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 17 C -0.22 -5.02 9.17 -39.39 -0.36 -5.38 16 18 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 19 O -0.22 -6.10 8.59 0.06 0.00 -6.10 16 20 C -0.39 -11.33 9.95 30.89 0.31 -11.02 16 21 H 0.11 3.14 5.43 -52.49 -0.29 2.85 16 22 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 23 N -0.88 -26.19 13.96 55.48 0.77 -25.42 16 24 Si 0.90 22.41 28.62 -169.99 -4.86 17.54 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 28 C -0.17 -3.72 9.64 -39.40 -0.38 -4.10 16 29 C -0.09 -0.71 1.34 -153.70 -0.21 -0.92 16 30 C -0.13 -0.97 8.44 37.16 0.31 -0.66 16 31 C -0.14 -0.88 8.96 37.16 0.33 -0.55 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.57 7.82 -51.93 -0.41 0.17 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.38 5.50 -51.93 -0.29 0.10 16 38 H 0.40 3.78 6.10 -40.82 -0.25 3.53 16 39 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 40 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 41 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.13 3.14 5.63 -52.49 -0.30 2.85 16 44 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.52 5.68 -51.93 -0.29 0.22 16 49 H 0.08 0.44 4.18 -51.93 -0.22 0.22 16 50 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 405.51 15.07 6.11 6.11 Total: -1.00 -34.00 405.51 -7.39 -41.39 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.85 Total: 5.33 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.12 Total: -17.32 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.53 Total: -33.64 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.19 Total: -19.40 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.86 Total: 17.54 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.00 -7.39 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271957021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.933 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds