Wall clock time and date at job start Wed Apr 1 2020 04:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99989 * 2 1 4 4 H 1.08996 * 112.90506 * 18.75042 * 3 2 1 5 5 C 1.53778 * 113.61442 * 247.49857 * 3 2 1 6 6 H 1.08997 * 113.61546 * 25.43120 * 5 3 2 7 7 C 1.52998 * 113.61748 * 156.33883 * 5 3 2 8 8 C 1.53785 * 87.07920 * 270.88349 * 5 3 2 9 9 H 1.08998 * 113.68960 * 220.00351 * 8 5 3 10 10 N 1.46505 * 113.61143 * 89.11583 * 8 5 3 11 11 C 1.34779 * 119.99883 * 107.50496 * 10 8 5 12 12 O 1.21281 * 120.00227 * 359.97438 * 11 10 8 13 13 C 1.50704 * 120.00032 * 179.97438 * 11 10 8 14 14 C 1.50702 * 109.46907 * 179.97438 * 13 11 10 15 15 C 1.38317 * 119.96658 * 90.00336 * 14 13 11 16 16 C 1.38287 * 120.13926 * 179.97438 * 15 14 13 17 17 C 1.38122 * 120.06678 * 0.02562 * 16 15 14 18 18 C 1.38862 * 119.93122 * 0.02562 * 17 16 15 19 19 O 1.35747 * 120.06670 * 179.97438 * 18 17 16 20 20 C 1.34829 * 117.00107 * 4.94828 * 19 18 17 21 21 H 1.07994 * 120.00200 * 354.94133 * 20 19 18 22 22 C 1.38655 * 120.00028 * 174.94435 * 20 19 18 23 23 N 1.31557 * 120.00147 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99961 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46902 * 89.99977 * 24 22 20 26 26 H 1.48499 * 109.47072 * 210.00288 * 24 22 20 27 27 H 1.48508 * 109.46960 * 330.00322 * 24 22 20 28 28 C 1.38077 * 119.96349 * 270.01702 * 14 13 11 29 29 C 1.53778 * 87.08135 * 334.56793 * 8 5 3 30 30 C 1.53004 * 113.61390 * 139.98198 * 29 8 5 31 31 C 1.52998 * 113.61245 * 270.88296 * 29 8 5 32 32 H 1.09003 * 109.46828 * 300.00061 * 1 2 3 33 33 H 1.08998 * 109.47159 * 59.99707 * 1 2 3 34 34 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.47272 * 128.76114 * 7 5 3 36 36 H 1.08998 * 109.47082 * 248.76070 * 7 5 3 37 37 H 1.08997 * 109.46705 * 8.75757 * 7 5 3 38 38 H 0.96999 * 120.00258 * 287.49529 * 10 8 5 39 39 H 1.08997 * 109.46989 * 59.99780 * 13 11 10 40 40 H 1.08997 * 109.47202 * 299.99865 * 13 11 10 41 41 H 1.07996 * 119.93066 * 359.71551 * 15 14 13 42 42 H 1.08000 * 119.96363 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.03570 * 180.02562 * 17 16 15 44 44 H 0.96994 * 119.99845 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.03588 * 0.03204 * 28 14 13 46 46 H 1.08995 * 109.47125 * 59.99491 * 30 29 8 47 47 H 1.08994 * 109.47286 * 180.02562 * 30 29 8 48 48 H 1.09000 * 109.47056 * 299.99962 * 30 29 8 49 49 H 1.08997 * 109.47191 * 51.20963 * 31 29 8 50 50 H 1.09004 * 109.46900 * 171.20884 * 31 29 8 51 51 H 1.09000 * 109.46983 * 291.20613 * 31 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3143 2.0797 0.3227 5 6 2.7534 1.6489 -1.3017 6 1 2.3927 1.0964 -2.1693 7 6 2.8735 3.1520 -1.5607 8 6 4.0061 1.0330 -0.6565 9 1 4.9222 1.5863 -0.8632 10 7 4.1436 -0.4054 -0.8977 11 6 5.0852 -0.8591 -1.7487 12 8 5.8184 -0.0764 -2.3151 13 6 5.2270 -2.3388 -1.9965 14 6 6.3429 -2.5787 -2.9806 15 6 7.6361 -2.7653 -2.5267 16 6 8.6626 -2.9862 -3.4266 17 6 8.3993 -3.0205 -4.7820 18 6 7.1022 -2.8324 -5.2408 19 8 6.8404 -2.8651 -6.5724 20 6 7.8636 -3.1859 -7.3898 21 1 8.8555 -3.3225 -6.9852 22 6 7.6423 -3.3405 -8.7498 23 7 8.6405 -3.6540 -9.5472 24 14 5.9263 -3.1049 -9.4496 25 1 5.7392 -1.6826 -9.8330 26 1 5.7575 -3.9668 -10.6470 27 1 4.9183 -3.4781 -8.4248 28 6 6.0732 -2.6116 -4.3344 29 6 3.3756 1.3719 0.7045 30 6 3.5741 0.2824 1.7603 31 6 3.7343 2.7687 1.2154 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 3.9135 3.4029 -1.7691 36 1 2.2557 3.4237 -2.4167 37 1 2.5367 3.7003 -0.6809 38 1 3.5571 -1.0314 -0.4449 39 1 4.2943 -2.7302 -2.4027 40 1 5.4548 -2.8442 -1.0580 41 1 7.8452 -2.7343 -1.4677 42 1 9.6714 -3.1312 -3.0691 43 1 9.2013 -3.1935 -5.4843 44 1 8.4856 -3.7624 -10.4986 45 1 5.0634 -2.4650 -4.6882 46 1 4.6402 0.1265 1.9254 47 1 3.1027 0.5905 2.6935 48 1 3.1206 -0.6462 1.4138 49 1 3.5316 3.5037 0.4365 50 1 3.1349 2.9984 2.0965 51 1 4.7919 2.7992 1.4774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271957021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:49 Heat of formation + Delta-G solvation = -78.824406 kcal Electronic energy + Delta-G solvation = -30857.408913 eV Core-core repulsion = 26722.851299 eV Total energy + Delta-G solvation = -4134.557614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12251 -41.00808 -40.03383 -38.27593 -37.42562 -34.60071 -34.48294 -33.41408 -32.68161 -31.09774 -29.32913 -28.53778 -27.68008 -27.29096 -26.97242 -25.31920 -23.38422 -22.65496 -21.92357 -21.32979 -19.90006 -19.59763 -18.81964 -18.08216 -17.31680 -17.02019 -16.88130 -16.80878 -16.58515 -16.25962 -16.01330 -15.68794 -15.57305 -15.10203 -14.94942 -14.63493 -14.51942 -14.33880 -14.15221 -13.99601 -13.82188 -13.70323 -13.34332 -13.25191 -13.06062 -13.01182 -12.86702 -12.83715 -12.51517 -12.46855 -12.36317 -12.22109 -12.17855 -11.93364 -11.80156 -11.31947 -11.26666 -11.05159 -10.94719 -10.85602 -10.24933 -9.87403 -9.67540 -9.07191 -8.51167 -6.23872 0.47853 0.69340 1.28211 1.33620 1.49189 1.68532 2.17102 2.26739 2.67564 2.79138 3.03773 3.14451 3.44228 3.51547 3.68151 3.76172 4.01475 4.06500 4.11775 4.23605 4.28918 4.32924 4.40957 4.42294 4.49048 4.54671 4.57499 4.62998 4.63623 4.69406 4.72487 4.81616 4.82170 4.84833 4.92847 4.96715 5.02484 5.07099 5.13061 5.15422 5.23805 5.34763 5.38538 5.44182 5.52071 5.64314 5.65042 5.71879 5.75903 5.90707 6.24055 6.29224 6.66153 6.83086 7.35632 7.58170 8.60724 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.002399 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.796298 B =11669.297371 C =12487.835308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.381 6.381 3 C 0.084 3.916 4 H 0.094 0.906 5 C -0.150 4.150 6 H 0.061 0.939 7 C -0.134 4.134 8 C 0.125 3.875 9 H 0.075 0.925 10 N -0.694 5.694 11 C 0.515 3.485 12 O -0.579 6.579 13 C -0.090 4.090 14 C -0.026 4.026 15 C -0.171 4.171 16 C -0.077 4.077 17 C -0.240 4.240 18 C 0.120 3.880 19 O -0.247 6.247 20 C -0.400 4.400 21 H 0.080 0.920 22 C 0.010 3.990 23 N -0.923 5.923 24 Si 0.970 3.030 25 H -0.268 1.268 26 H -0.263 1.263 27 H -0.263 1.263 28 C -0.182 4.182 29 C -0.081 4.081 30 C -0.131 4.131 31 C -0.143 4.143 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.416 0.584 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.142 0.858 43 H 0.108 0.892 44 H 0.285 0.715 45 H 0.119 0.881 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.047 10.311 28.622 35.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.300 6.300 3 C 0.026 3.974 4 H 0.112 0.888 5 C -0.170 4.170 6 H 0.080 0.920 7 C -0.191 4.191 8 C 0.019 3.981 9 H 0.094 0.906 10 N -0.346 5.346 11 C 0.302 3.698 12 O -0.458 6.458 13 C -0.130 4.130 14 C -0.027 4.027 15 C -0.189 4.189 16 C -0.095 4.095 17 C -0.260 4.260 18 C 0.071 3.929 19 O -0.155 6.155 20 C -0.476 4.476 21 H 0.098 0.902 22 C -0.188 4.188 23 N -0.564 5.564 24 Si 0.792 3.208 25 H -0.193 1.193 26 H -0.187 1.187 27 H -0.188 1.188 28 C -0.201 4.201 29 C -0.082 4.082 30 C -0.188 4.188 31 C -0.200 4.200 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.255 0.745 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.137 0.863 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.557 10.666 27.901 35.166 hybrid contribution -0.182 -0.159 -1.141 1.166 sum -18.740 10.507 26.760 34.318 Atomic orbital electron populations 1.22954 0.79481 1.03782 1.00604 1.87734 1.21148 1.26681 1.94392 1.23316 0.94205 0.85573 0.94321 0.88806 1.23415 0.97406 0.97815 0.98359 0.92040 1.21769 1.02235 0.92289 1.02837 1.22133 0.97503 0.81711 0.96778 0.90634 1.45541 1.35828 1.07776 1.45474 1.20934 0.79438 0.91326 0.78075 1.90742 1.45675 1.59253 1.50124 1.20687 0.98995 0.92283 1.01006 1.19194 0.95211 0.96546 0.91754 1.21000 0.91754 1.05924 1.00210 1.21116 1.00253 0.96779 0.91330 1.21324 0.96246 1.10828 0.97570 1.19571 0.94459 0.95365 0.83500 1.83505 1.38103 1.80165 1.13747 1.20726 0.88805 1.48581 0.89518 0.90218 1.25273 1.03184 0.95494 0.94866 1.69727 1.33215 1.47848 1.05656 0.85231 0.78545 0.78914 0.78082 1.19343 1.18746 1.18771 1.20246 0.97463 1.10099 0.92324 1.22430 0.94012 0.98194 0.93543 1.21535 1.01420 0.98086 0.97766 1.21930 1.02351 0.93241 1.02471 0.92596 0.94116 0.88545 0.92647 0.92195 0.89007 0.74531 0.86000 0.84076 0.83451 0.84060 0.87387 0.90540 0.86347 0.92988 0.91315 0.91574 0.90081 0.90161 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 113.37 1.23 1.47 16 2 O -0.38 -5.04 7.93 -148.98 -1.18 -6.22 16 3 C 0.08 1.05 3.36 31.12 0.10 1.16 16 4 H 0.09 0.84 7.63 -2.39 -0.02 0.82 16 5 C -0.15 -2.62 4.18 -10.27 -0.04 -2.66 16 6 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 7 C -0.13 -1.91 8.55 71.98 0.62 -1.30 16 8 C 0.12 2.48 3.40 45.52 0.15 2.63 16 9 H 0.08 1.92 7.17 -2.39 -0.02 1.90 16 10 N -0.69 -14.18 4.66 -440.02 -2.05 -16.23 16 11 C 0.51 14.21 7.82 87.66 0.69 14.89 16 12 O -0.58 -22.42 15.63 -3.03 -0.05 -22.47 16 13 C -0.09 -2.11 5.83 29.10 0.17 -1.94 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 15 C -0.17 -5.66 9.70 22.30 0.22 -5.44 16 16 C -0.08 -2.92 10.04 22.25 0.22 -2.69 16 17 C -0.24 -11.54 9.17 22.39 0.21 -11.34 16 18 C 0.12 6.14 6.65 22.58 0.15 6.29 16 19 O -0.25 -14.44 8.59 -22.70 -0.19 -14.63 16 20 C -0.40 -24.90 9.95 67.92 0.68 -24.22 16 21 H 0.08 5.19 5.43 -2.91 -0.02 5.17 16 22 C 0.01 0.60 5.49 84.83 0.47 1.07 16 23 N -0.92 -57.11 13.96 21.61 0.30 -56.81 16 24 Si 0.97 47.56 28.62 68.60 1.96 49.52 16 25 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 28 C -0.18 -7.81 9.64 22.39 0.22 -7.59 16 29 C -0.08 -1.04 1.34 -51.66 -0.07 -1.11 16 30 C -0.13 -1.52 8.44 71.98 0.61 -0.91 16 31 C -0.14 -1.38 8.96 71.98 0.64 -0.74 16 32 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.93 7.82 -2.39 -0.02 0.91 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.83 5.50 -2.39 -0.01 0.81 16 38 H 0.42 6.55 6.10 -92.71 -0.57 5.99 16 39 H 0.12 2.35 8.08 -2.39 -0.02 2.33 16 40 H 0.14 2.14 8.09 -2.39 -0.02 2.12 16 41 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.11 5.61 5.63 -2.91 -0.02 5.60 16 44 H 0.28 16.10 8.31 -92.71 -0.77 15.33 16 45 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 46 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 47 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.79 5.68 -2.39 -0.01 0.77 16 49 H 0.08 0.72 4.18 -2.39 -0.01 0.71 16 50 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 51 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -79.82 405.51 5.33 -74.48 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.38 Total: 25.78 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 6.17 Total: -33.43 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.75 Total: -73.04 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.42 Total: -43.31 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.96 Total: 49.52 kcal Total: -79.82 5.33 -74.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271957021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.340 kcal (2) G-P(sol) polarization free energy of solvation -79.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds