Wall clock time and date at job start Wed Apr 1 2020 05:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00645 * 2 1 4 4 C 1.53002 * 109.47026 * 269.99994 * 3 2 1 5 5 H 1.09001 * 109.47104 * 305.00086 * 4 3 2 6 6 C 1.53005 * 109.47078 * 64.99701 * 4 3 2 7 7 C 1.53002 * 109.46754 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47444 * 299.99997 * 7 6 4 9 9 C 1.52997 * 109.46927 * 60.00241 * 8 7 6 10 10 C 1.52998 * 109.47120 * 184.99699 * 4 3 2 11 11 H 1.09001 * 109.46993 * 299.99897 * 10 4 3 12 12 O 1.42907 * 109.46924 * 59.99976 * 10 4 3 13 13 C 1.34781 * 119.99584 * 179.97438 * 2 1 3 14 14 O 1.21283 * 119.99924 * 180.02562 * 13 2 1 15 15 C 1.50703 * 119.99871 * 0.02562 * 13 2 1 16 16 C 1.50701 * 109.46951 * 179.97438 * 15 13 2 17 17 C 1.38316 * 119.96904 * 89.99521 * 16 15 13 18 18 C 1.38283 * 120.14022 * 179.97438 * 17 16 15 19 19 C 1.38119 * 120.06626 * 0.02562 * 18 17 16 20 20 C 1.38854 * 119.93467 * 359.97438 * 19 18 17 21 21 O 1.35747 * 120.06947 * 180.02562 * 20 19 18 22 22 C 1.34824 * 117.00241 * 354.46236 * 21 20 19 23 23 H 1.08007 * 120.00119 * 5.05789 * 22 21 20 24 24 C 1.38648 * 120.00209 * 185.05811 * 22 21 20 25 25 N 1.31563 * 120.00353 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 120.00105 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47058 * 89.99979 * 26 24 22 28 28 H 1.48506 * 109.46905 * 209.99828 * 26 24 22 29 29 H 1.48494 * 109.46797 * 329.99707 * 26 24 22 30 30 C 1.38081 * 119.96303 * 269.72210 * 16 15 13 31 31 H 1.09005 * 109.46618 * 89.99724 * 1 2 3 32 32 H 1.08990 * 109.47823 * 210.00235 * 1 2 3 33 33 H 1.09000 * 109.46876 * 330.00459 * 1 2 3 34 34 H 1.08993 * 109.47021 * 149.99967 * 3 2 1 35 35 H 1.09003 * 109.46588 * 29.99640 * 3 2 1 36 36 H 1.09001 * 109.46838 * 60.00222 * 6 4 3 37 37 H 1.09003 * 109.47105 * 300.00020 * 6 4 3 38 38 H 1.08997 * 109.46654 * 179.97438 * 7 6 4 39 39 H 1.09001 * 109.47105 * 60.00583 * 7 6 4 40 40 H 1.08998 * 109.47075 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.46993 * 300.00097 * 8 7 6 42 42 H 1.09001 * 109.47401 * 60.00106 * 9 8 7 43 43 H 1.08995 * 109.47485 * 180.02562 * 9 8 7 44 44 H 0.96696 * 113.99692 * 180.02562 * 12 10 4 45 45 H 1.08996 * 109.47049 * 299.99320 * 15 13 2 46 46 H 1.09001 * 109.47127 * 59.99780 * 15 13 2 47 47 H 1.08001 * 119.92744 * 0.02682 * 17 16 15 48 48 H 1.08003 * 119.96314 * 180.02562 * 18 17 16 49 49 H 1.08005 * 120.03155 * 180.02562 * 19 18 17 50 50 H 0.97002 * 120.00295 * 179.97438 * 25 24 22 51 51 H 1.08001 * 120.03471 * 0.02562 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4527 1.7103 -1.4425 5 1 2.9643 0.9129 -1.9816 6 6 1.1181 2.0135 -2.1266 7 6 1.3733 2.4557 -3.5689 8 6 2.2444 3.7135 -3.5702 9 6 3.5789 3.4102 -2.8862 10 6 3.3240 2.9679 -1.4444 11 1 2.8123 3.7652 -0.9054 12 8 4.5705 2.6846 -0.8054 13 6 2.1388 -1.1673 0.0005 14 8 3.3516 -1.1674 0.0010 15 6 1.3852 -2.4723 0.0005 16 6 2.3644 -3.6179 0.0005 17 6 2.8134 -4.1430 1.1987 18 6 3.7116 -5.1944 1.2029 19 6 4.1634 -5.7232 0.0096 20 6 3.7146 -5.1983 -1.1950 21 8 4.1565 -5.7162 -2.3694 22 6 5.1159 -6.6609 -2.2993 23 1 5.4397 -7.0315 -1.3379 24 6 5.6869 -7.1566 -3.4614 25 7 5.2923 -6.7056 -4.6326 26 14 7.0157 -8.4661 -3.3643 27 1 6.3880 -9.8114 -3.3941 28 1 7.9364 -8.3237 -4.5208 29 1 7.7790 -8.3038 -2.1010 30 6 2.8081 -4.1458 -1.1957 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8898 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.1500 1.1382 0.5138 35 1 1.6085 2.0283 0.5138 36 1 0.6065 2.8109 -1.5876 37 1 0.4973 1.1175 -2.1253 38 1 0.4225 2.6713 -4.0563 39 1 1.8851 1.6586 -4.1082 40 1 2.4265 4.0282 -4.5978 41 1 1.7325 4.5105 -3.0310 42 1 4.0908 2.6132 -3.4254 43 1 4.1994 4.3063 -2.8867 44 1 5.1746 3.4388 -0.7700 45 1 0.7583 -2.5299 0.8903 46 1 0.7588 -2.5302 -0.8897 47 1 2.4612 -3.7315 2.1331 48 1 4.0600 -5.6026 2.1402 49 1 4.8646 -6.5447 0.0135 50 1 5.6920 -7.0522 -5.4456 51 1 2.4541 -3.7380 -2.1310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272471098.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:02 Heat of formation + Delta-G solvation = -102.265485 kcal Electronic energy + Delta-G solvation = -30832.450837 eV Core-core repulsion = 26696.876742 eV Total energy + Delta-G solvation = -4135.574095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.27185 -39.21126 -38.58782 -36.47921 -35.88138 -35.30489 -32.54339 -32.14245 -31.35732 -29.95316 -29.10758 -27.54779 -27.12096 -25.33238 -24.80073 -22.86188 -21.87430 -21.49385 -20.75567 -20.10477 -19.00998 -17.54490 -17.45879 -16.89907 -16.81112 -16.24022 -15.93080 -15.19074 -14.87369 -14.76952 -14.35090 -14.32782 -14.21791 -14.06705 -13.63645 -13.49485 -13.31051 -13.17488 -13.08056 -12.96428 -12.58203 -12.45925 -12.27997 -12.22406 -11.82905 -11.75076 -11.61578 -11.43803 -11.20186 -11.18939 -10.98312 -10.77474 -10.67117 -10.58945 -10.52008 -10.42899 -10.36941 -10.03912 -9.53650 -9.24043 -8.75060 -8.60212 -7.95664 -7.11518 -6.35600 -3.94372 2.19716 2.49549 2.87422 3.08345 3.18598 3.20243 3.24742 3.96646 4.04367 4.38149 4.43706 4.55722 4.70130 4.77965 4.89426 4.91663 4.98042 5.06108 5.08364 5.08918 5.17522 5.19626 5.24178 5.25512 5.30357 5.39399 5.43141 5.55093 5.58694 5.67582 5.75089 5.77666 5.84541 5.84850 5.86963 5.97167 5.98016 6.02962 6.07669 6.21884 6.27719 6.43819 6.56452 6.76161 7.01996 7.16800 7.37280 7.41963 7.47084 7.51186 7.53949 7.93262 8.09731 8.41814 9.10338 9.81998 10.82866 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.002564 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.331127 B =10919.457952 C =12233.813865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.625 5.625 3 C 0.126 3.874 4 C -0.097 4.097 5 H 0.084 0.916 6 C -0.114 4.114 7 C -0.124 4.124 8 C -0.115 4.115 9 C -0.153 4.153 10 C 0.114 3.886 11 H 0.052 0.948 12 O -0.559 6.559 13 C 0.512 3.488 14 O -0.509 6.509 15 C -0.092 4.092 16 C -0.032 4.032 17 C -0.196 4.196 18 C -0.075 4.075 19 C -0.231 4.231 20 C 0.155 3.845 21 O -0.181 6.181 22 C -0.389 4.389 23 H 0.091 0.909 24 C 0.038 3.962 25 N -0.865 5.865 26 Si 0.940 3.060 27 H -0.274 1.274 28 H -0.278 1.278 29 H -0.268 1.268 30 C -0.174 4.174 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.374 0.626 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.126 0.874 50 H 0.268 0.732 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.632 21.271 7.356 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.361 5.361 3 C 0.003 3.997 4 C -0.116 4.116 5 H 0.103 0.897 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.153 4.153 9 C -0.191 4.191 10 C 0.055 3.945 11 H 0.070 0.930 12 O -0.364 6.364 13 C 0.300 3.700 14 O -0.383 6.383 15 C -0.132 4.132 16 C -0.033 4.033 17 C -0.215 4.215 18 C -0.093 4.093 19 C -0.251 4.251 20 C 0.102 3.898 21 O -0.085 6.085 22 C -0.466 4.466 23 H 0.108 0.892 24 C -0.166 4.166 25 N -0.501 5.501 26 Si 0.765 3.235 27 H -0.200 1.200 28 H -0.203 1.203 29 H -0.192 1.192 30 C -0.193 4.193 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.221 0.779 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.120 0.880 48 H 0.125 0.875 49 H 0.143 0.857 50 H 0.078 0.922 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.242 20.660 6.938 24.523 hybrid contribution 0.867 0.009 -0.098 0.872 sum -10.375 20.669 6.840 24.117 Atomic orbital electron populations 1.21891 0.79991 1.03052 1.01768 1.47899 1.06609 1.06022 1.75533 1.21406 0.98140 0.84203 0.95934 1.21549 0.95351 0.97258 0.97480 0.89733 1.21687 0.96452 1.01492 0.95495 1.21582 0.99784 0.97849 0.96936 1.21469 0.95431 0.97871 1.00537 1.22271 0.98063 1.01734 0.97012 1.21707 0.85003 0.96253 0.91577 0.93032 1.86651 1.28073 1.40917 1.80757 1.20765 0.88337 0.84889 0.75994 1.90782 1.13759 1.86859 1.46854 1.20630 0.97771 0.90637 1.04142 1.18686 0.96919 0.94585 0.93090 1.20338 1.04027 1.01130 0.96023 1.20671 0.96129 0.95727 0.96780 1.21166 1.06739 1.05032 0.92139 1.19264 0.92461 0.91499 0.86575 1.83971 1.49817 1.49918 1.24757 1.21310 1.14948 1.15675 0.94641 0.89164 1.25264 0.98375 0.98698 0.94218 1.70046 1.41231 1.41419 0.97389 0.85729 0.79651 0.79779 0.78367 1.19958 1.20314 1.19225 1.19928 1.03116 0.99111 0.97154 0.92488 0.90870 0.91318 0.88916 0.91325 0.92055 0.90814 0.91794 0.91601 0.91784 0.92044 0.90851 0.91826 0.77939 0.88565 0.88482 0.88012 0.87520 0.85655 0.92172 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 9.30 59.85 0.56 1.11 16 2 N -0.63 -7.25 2.70 -181.57 -0.49 -7.74 16 3 C 0.13 1.42 4.85 -4.04 -0.02 1.40 16 4 C -0.10 -1.06 2.14 -90.62 -0.19 -1.25 16 5 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 6 C -0.11 -0.94 4.77 -26.73 -0.13 -1.07 16 7 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 8 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 9 C -0.15 -1.30 5.54 -26.76 -0.15 -1.45 16 10 C 0.11 1.08 2.90 -26.76 -0.08 1.00 16 11 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 12 O -0.56 -6.27 12.56 -35.23 -0.44 -6.72 16 13 C 0.51 8.09 7.67 -10.98 -0.08 8.01 16 14 O -0.51 -10.74 15.61 5.56 0.09 -10.65 16 15 C -0.09 -1.31 4.38 -29.03 -0.13 -1.44 16 16 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 17 C -0.20 -3.73 9.70 -39.54 -0.38 -4.11 16 18 C -0.07 -1.50 10.04 -39.61 -0.40 -1.90 16 19 C -0.23 -5.43 9.17 -39.40 -0.36 -5.79 16 20 C 0.16 4.02 6.65 -39.11 -0.26 3.76 16 21 O -0.18 -5.43 9.76 0.08 0.00 -5.43 16 22 C -0.39 -11.39 9.49 30.88 0.29 -11.10 16 23 H 0.09 2.45 5.20 -52.48 -0.27 2.18 16 24 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 25 N -0.87 -26.26 13.67 55.48 0.76 -25.50 16 26 Si 0.94 21.34 29.55 -169.99 -5.02 16.32 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 30 C -0.17 -3.98 9.64 -39.39 -0.38 -4.36 16 31 H 0.06 0.37 6.38 -51.93 -0.33 0.04 16 32 H 0.07 0.46 6.44 -51.93 -0.33 0.12 16 33 H 0.07 0.36 7.89 -51.93 -0.41 -0.05 16 34 H 0.09 1.35 6.81 -51.93 -0.35 1.00 16 35 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.62 5.43 -51.93 -0.28 0.34 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.37 2.49 9.08 45.56 0.41 2.91 16 45 H 0.10 1.07 7.34 -51.93 -0.38 0.69 16 46 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 47 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 48 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 49 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 50 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 405.04 15.07 6.10 6.10 Total: -1.00 -37.02 405.04 -8.87 -45.90 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.28 Total: 7.15 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -2.58 Total: -19.44 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.27 Total: -33.23 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.36 Total: -22.80 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.02 -8.87 -45.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272471098.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.370 kcal (2) G-P(sol) polarization free energy of solvation -37.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds