Wall clock time and date at job start Wed Apr 1 2020 05:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00645 * 2 1 4 4 C 1.53002 * 109.47026 * 269.99994 * 3 2 1 5 5 H 1.09001 * 109.47104 * 305.00086 * 4 3 2 6 6 C 1.53005 * 109.47078 * 64.99701 * 4 3 2 7 7 C 1.53002 * 109.46754 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47444 * 299.99997 * 7 6 4 9 9 C 1.52997 * 109.46927 * 60.00241 * 8 7 6 10 10 C 1.52998 * 109.47120 * 184.99699 * 4 3 2 11 11 H 1.09001 * 109.46993 * 299.99897 * 10 4 3 12 12 O 1.42907 * 109.46924 * 59.99976 * 10 4 3 13 13 C 1.34781 * 119.99584 * 179.97438 * 2 1 3 14 14 O 1.21283 * 119.99924 * 180.02562 * 13 2 1 15 15 C 1.50703 * 119.99871 * 0.02562 * 13 2 1 16 16 C 1.50701 * 109.46951 * 179.97438 * 15 13 2 17 17 C 1.38316 * 119.96904 * 89.99521 * 16 15 13 18 18 C 1.38283 * 120.14022 * 179.97438 * 17 16 15 19 19 C 1.38119 * 120.06626 * 0.02562 * 18 17 16 20 20 C 1.38854 * 119.93467 * 359.97438 * 19 18 17 21 21 O 1.35747 * 120.06947 * 180.02562 * 20 19 18 22 22 C 1.34824 * 117.00241 * 354.46236 * 21 20 19 23 23 H 1.08007 * 120.00119 * 5.05789 * 22 21 20 24 24 C 1.38648 * 120.00209 * 185.05811 * 22 21 20 25 25 N 1.31563 * 120.00353 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 120.00105 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47058 * 89.99979 * 26 24 22 28 28 H 1.48506 * 109.46905 * 209.99828 * 26 24 22 29 29 H 1.48494 * 109.46797 * 329.99707 * 26 24 22 30 30 C 1.38081 * 119.96303 * 269.72210 * 16 15 13 31 31 H 1.09005 * 109.46618 * 89.99724 * 1 2 3 32 32 H 1.08990 * 109.47823 * 210.00235 * 1 2 3 33 33 H 1.09000 * 109.46876 * 330.00459 * 1 2 3 34 34 H 1.08993 * 109.47021 * 149.99967 * 3 2 1 35 35 H 1.09003 * 109.46588 * 29.99640 * 3 2 1 36 36 H 1.09001 * 109.46838 * 60.00222 * 6 4 3 37 37 H 1.09003 * 109.47105 * 300.00020 * 6 4 3 38 38 H 1.08997 * 109.46654 * 179.97438 * 7 6 4 39 39 H 1.09001 * 109.47105 * 60.00583 * 7 6 4 40 40 H 1.08998 * 109.47075 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.46993 * 300.00097 * 8 7 6 42 42 H 1.09001 * 109.47401 * 60.00106 * 9 8 7 43 43 H 1.08995 * 109.47485 * 180.02562 * 9 8 7 44 44 H 0.96696 * 113.99692 * 180.02562 * 12 10 4 45 45 H 1.08996 * 109.47049 * 299.99320 * 15 13 2 46 46 H 1.09001 * 109.47127 * 59.99780 * 15 13 2 47 47 H 1.08001 * 119.92744 * 0.02682 * 17 16 15 48 48 H 1.08003 * 119.96314 * 180.02562 * 18 17 16 49 49 H 1.08005 * 120.03155 * 180.02562 * 19 18 17 50 50 H 0.97002 * 120.00295 * 179.97438 * 25 24 22 51 51 H 1.08001 * 120.03471 * 0.02562 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4527 1.7103 -1.4425 5 1 2.9643 0.9129 -1.9816 6 6 1.1181 2.0135 -2.1266 7 6 1.3733 2.4557 -3.5689 8 6 2.2444 3.7135 -3.5702 9 6 3.5789 3.4102 -2.8862 10 6 3.3240 2.9679 -1.4444 11 1 2.8123 3.7652 -0.9054 12 8 4.5705 2.6846 -0.8054 13 6 2.1388 -1.1673 0.0005 14 8 3.3516 -1.1674 0.0010 15 6 1.3852 -2.4723 0.0005 16 6 2.3644 -3.6179 0.0005 17 6 2.8134 -4.1430 1.1987 18 6 3.7116 -5.1944 1.2029 19 6 4.1634 -5.7232 0.0096 20 6 3.7146 -5.1983 -1.1950 21 8 4.1565 -5.7162 -2.3694 22 6 5.1159 -6.6609 -2.2993 23 1 5.4397 -7.0315 -1.3379 24 6 5.6869 -7.1566 -3.4614 25 7 5.2923 -6.7056 -4.6326 26 14 7.0157 -8.4661 -3.3643 27 1 6.3880 -9.8114 -3.3941 28 1 7.9364 -8.3237 -4.5208 29 1 7.7790 -8.3038 -2.1010 30 6 2.8081 -4.1458 -1.1957 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8898 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.1500 1.1382 0.5138 35 1 1.6085 2.0283 0.5138 36 1 0.6065 2.8109 -1.5876 37 1 0.4973 1.1175 -2.1253 38 1 0.4225 2.6713 -4.0563 39 1 1.8851 1.6586 -4.1082 40 1 2.4265 4.0282 -4.5978 41 1 1.7325 4.5105 -3.0310 42 1 4.0908 2.6132 -3.4254 43 1 4.1994 4.3063 -2.8867 44 1 5.1746 3.4388 -0.7700 45 1 0.7583 -2.5299 0.8903 46 1 0.7588 -2.5302 -0.8897 47 1 2.4612 -3.7315 2.1331 48 1 4.0600 -5.6026 2.1402 49 1 4.8646 -6.5447 0.0135 50 1 5.6920 -7.0522 -5.4456 51 1 2.4541 -3.7380 -2.1310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272471098.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:01 Heat of formation + Delta-G solvation = -128.463775 kcal Electronic energy + Delta-G solvation = -30833.586880 eV Core-core repulsion = 26696.876742 eV Total energy + Delta-G solvation = -4136.710138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.37911 -40.66839 -39.84852 -38.22959 -36.85332 -36.21938 -34.36491 -33.69816 -32.42997 -30.89592 -30.66156 -28.78335 -28.01740 -27.31410 -25.89832 -23.61499 -23.29586 -22.86050 -22.18291 -20.83878 -20.22507 -19.41385 -18.75105 -18.27278 -17.91219 -17.19607 -16.98285 -16.71465 -16.43589 -16.11129 -15.74651 -15.57767 -15.44886 -15.13818 -14.91787 -14.78250 -14.40561 -14.24660 -14.19698 -14.00664 -13.92011 -13.78905 -13.59241 -13.17201 -12.98153 -12.91636 -12.77224 -12.58964 -12.49056 -12.39229 -12.32037 -12.23537 -12.11791 -11.94466 -11.65157 -11.37552 -11.22325 -11.17727 -10.85264 -10.79401 -10.75334 -9.64509 -9.54974 -8.98997 -8.48285 -6.17065 0.50934 0.74416 1.32093 1.42514 1.50646 1.68603 2.10081 2.17093 2.82690 3.13948 3.27884 3.43545 3.63370 3.74166 3.75409 3.91283 4.03244 4.08363 4.14319 4.25023 4.27845 4.30738 4.36295 4.37647 4.41790 4.47348 4.53878 4.56242 4.58551 4.60842 4.71301 4.73470 4.88393 4.91066 4.99036 5.04625 5.06702 5.11409 5.15553 5.17404 5.20528 5.26301 5.29297 5.36907 5.48474 5.63434 5.67952 5.71257 5.74180 6.01446 6.21470 6.43746 6.92162 6.96039 7.27691 7.77692 8.75487 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.002564 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.331127 B =10919.457952 C =12233.813865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.613 5.613 3 C 0.126 3.874 4 C -0.095 4.095 5 H 0.027 0.973 6 C -0.107 4.107 7 C -0.127 4.127 8 C -0.111 4.111 9 C -0.152 4.152 10 C 0.112 3.888 11 H 0.084 0.916 12 O -0.590 6.590 13 C 0.506 3.494 14 O -0.579 6.579 15 C -0.088 4.088 16 C -0.025 4.025 17 C -0.181 4.181 18 C -0.073 4.073 19 C -0.248 4.248 20 C 0.113 3.887 21 O -0.235 6.235 22 C -0.415 4.415 23 H 0.100 0.900 24 C -0.025 4.025 25 N -0.923 5.923 26 Si 1.021 2.979 27 H -0.259 1.259 28 H -0.270 1.270 29 H -0.255 1.255 30 C -0.194 4.194 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.082 0.918 44 H 0.391 0.609 45 H 0.144 0.856 46 H 0.117 0.883 47 H 0.147 0.853 48 H 0.147 0.853 49 H 0.119 0.881 50 H 0.273 0.727 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.229 23.397 10.434 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.346 5.346 3 C 0.004 3.996 4 C -0.115 4.115 5 H 0.045 0.955 6 C -0.144 4.144 7 C -0.164 4.164 8 C -0.149 4.149 9 C -0.190 4.190 10 C 0.054 3.946 11 H 0.101 0.899 12 O -0.399 6.399 13 C 0.295 3.705 14 O -0.458 6.458 15 C -0.127 4.127 16 C -0.026 4.026 17 C -0.199 4.199 18 C -0.091 4.091 19 C -0.267 4.267 20 C 0.063 3.937 21 O -0.142 6.142 22 C -0.491 4.491 23 H 0.117 0.883 24 C -0.222 4.222 25 N -0.561 5.561 26 Si 0.840 3.160 27 H -0.183 1.183 28 H -0.195 1.195 29 H -0.179 1.179 30 C -0.213 4.213 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.240 0.760 45 H 0.162 0.838 46 H 0.135 0.865 47 H 0.165 0.835 48 H 0.164 0.836 49 H 0.136 0.864 50 H 0.081 0.919 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.919 22.845 10.060 28.581 hybrid contribution 1.494 -0.417 -0.850 1.769 sum -12.425 22.428 9.210 27.244 Atomic orbital electron populations 1.22292 0.76613 1.05551 1.03286 1.47940 1.08614 1.04867 1.73199 1.21446 0.97227 0.84905 0.96053 1.21515 0.96777 0.96362 0.96829 0.95472 1.21668 0.94762 1.02533 0.95413 1.21606 1.00519 0.97420 0.96872 1.21470 0.94469 0.97962 1.00978 1.22257 0.99094 1.01261 0.96341 1.21836 0.84430 0.96159 0.92225 0.89857 1.86621 1.29370 1.42763 1.81097 1.21028 0.87600 0.86449 0.75382 1.90766 1.16637 1.87890 1.50544 1.20738 0.96815 0.87721 1.07439 1.19229 0.96569 0.95024 0.91763 1.20965 1.01917 0.99474 0.97576 1.21141 0.95508 0.95525 0.96897 1.21295 1.07234 1.05410 0.92737 1.19857 0.94069 0.93140 0.86672 1.83930 1.51523 1.51630 1.27139 1.21835 1.15509 1.16178 0.95586 0.88266 1.26640 1.00901 1.01251 0.93394 1.70199 1.43574 1.43945 0.98391 0.84568 0.76065 0.76488 0.78928 1.18327 1.19485 1.17882 1.20188 1.03426 0.99087 0.98632 0.91414 0.89123 0.88225 0.92840 0.87238 0.88826 0.90934 0.89932 0.94671 0.91453 0.89569 0.94337 0.89940 0.75993 0.83814 0.86479 0.83520 0.83563 0.86361 0.91853 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 9.30 127.77 1.19 1.82 16 2 N -0.61 -12.93 2.70 -846.75 -2.28 -15.21 16 3 C 0.13 2.69 4.85 86.38 0.42 3.11 16 4 C -0.09 -2.07 2.14 -10.79 -0.02 -2.09 16 5 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 6 C -0.11 -1.53 4.77 30.60 0.15 -1.38 16 7 C -0.13 -1.93 5.92 30.59 0.18 -1.75 16 8 C -0.11 -1.43 5.92 30.59 0.18 -1.25 16 9 C -0.15 -2.54 5.54 30.58 0.17 -2.37 16 10 C 0.11 2.04 2.90 30.58 0.09 2.12 16 11 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 12 O -0.59 -13.72 12.56 -148.98 -1.87 -15.59 16 13 C 0.51 15.59 7.67 87.66 0.67 16.26 16 14 O -0.58 -25.37 15.61 -3.04 -0.05 -25.42 16 15 C -0.09 -2.28 4.38 29.10 0.13 -2.16 16 16 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 17 C -0.18 -6.37 9.70 22.30 0.22 -6.15 16 18 C -0.07 -2.81 10.04 22.25 0.22 -2.59 16 19 C -0.25 -11.98 9.17 22.39 0.21 -11.77 16 20 C 0.11 6.22 6.65 22.58 0.15 6.37 16 21 O -0.24 -15.33 9.76 -22.65 -0.22 -15.55 16 22 C -0.41 -25.89 9.49 67.92 0.64 -25.24 16 23 H 0.10 5.72 5.20 -2.91 -0.02 5.70 16 24 C -0.02 -1.50 5.49 84.83 0.47 -1.03 16 25 N -0.92 -59.53 13.67 21.61 0.30 -59.24 16 26 Si 1.02 45.34 29.55 68.60 2.03 47.37 16 27 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 30 C -0.19 -9.33 9.64 22.39 0.22 -9.12 16 31 H 0.07 0.60 6.38 -2.38 -0.02 0.58 16 32 H 0.09 0.63 6.44 -2.39 -0.02 0.62 16 33 H 0.10 0.45 7.89 -2.39 -0.02 0.43 16 34 H 0.05 1.59 6.81 -2.39 -0.02 1.58 16 35 H 0.11 1.43 7.89 -2.39 -0.02 1.41 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.05 5.43 -2.39 -0.01 1.04 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.39 5.28 9.08 -74.06 -0.67 4.61 16 45 H 0.14 2.39 7.34 -2.39 -0.02 2.37 16 46 H 0.12 2.61 8.05 -2.39 -0.02 2.59 16 47 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 48 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 49 H 0.12 5.75 5.64 -2.91 -0.02 5.73 16 50 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 51 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -93.12 405.04 3.35 -89.77 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.27 Total: 32.13 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 5.18 Total: -38.26 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.99 Total: -74.45 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -2.14 Total: -56.56 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -93.12 3.35 -89.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272471098.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.693 kcal (2) G-P(sol) polarization free energy of solvation -93.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds