Wall clock time and date at job start Wed Apr 1 2020 05:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47497 * 2 1 4 4 C 1.50708 * 109.46676 * 240.00414 * 2 1 3 5 5 O 1.21289 * 119.99669 * 239.99833 * 4 2 1 6 6 N 1.34772 * 119.99727 * 60.00158 * 4 2 1 7 7 C 1.40163 * 119.99566 * 179.97438 * 6 4 2 8 8 C 1.40409 * 125.97252 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86602 * 179.76019 * 8 7 6 10 10 N 1.34966 * 107.86079 * 0.39163 * 9 8 7 11 11 C 1.46500 * 125.97782 * 179.87198 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71059 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 N 1.31219 * 125.97499 * 180.02562 * 7 6 4 21 21 N 1.46501 * 109.47291 * 120.00811 * 2 1 3 22 22 N 1.29013 * 126.44123 * 60.01982 * 21 2 1 23 23 N 1.28736 * 108.80929 * 179.97438 * 22 21 2 24 24 N 1.28832 * 109.39885 * 0.02562 * 23 22 21 25 25 C 1.31074 * 107.99288 * 359.75096 * 24 23 22 26 26 C 1.50697 * 126.66327 * 180.24512 * 25 24 23 27 27 C 1.52998 * 109.47089 * 240.17342 * 26 25 24 28 28 C 1.52996 * 109.47080 * 0.17138 * 26 25 24 29 29 C 1.53003 * 109.47018 * 120.17513 * 26 25 24 30 30 H 1.08996 * 109.47124 * 59.99280 * 1 2 3 31 31 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46542 * 299.99479 * 1 2 3 33 33 H 0.96996 * 120.00403 * 359.97438 * 6 4 2 34 34 H 1.08002 * 126.06850 * 0.02562 * 8 7 6 35 35 H 1.08004 * 126.06994 * 180.24391 * 9 8 7 36 36 H 1.09004 * 109.47078 * 4.71821 * 11 10 9 37 37 H 1.08993 * 109.47364 * 244.71592 * 11 10 9 38 38 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 39 39 H 1.08994 * 109.47238 * 59.99828 * 27 26 25 40 40 H 1.09001 * 109.47167 * 180.02562 * 27 26 25 41 41 H 1.09007 * 109.47335 * 299.99924 * 27 26 25 42 42 H 1.08996 * 109.47295 * 60.00190 * 28 26 25 43 43 H 1.09004 * 109.47208 * 179.97438 * 28 26 25 44 44 H 1.09003 * 109.47278 * 300.00035 * 28 26 25 45 45 H 1.08994 * 109.47054 * 59.99549 * 29 26 25 46 46 H 1.09003 * 109.46767 * 180.02562 * 29 26 25 47 47 H 1.09002 * 109.46725 * 299.99909 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 2.7295 -1.6965 -1.1194 6 7 1.7066 -0.2498 -2.4546 7 6 2.1741 -0.9101 -3.5991 8 6 2.9847 -2.0565 -3.6165 9 6 3.2111 -2.3850 -4.9088 10 7 2.5777 -1.4791 -5.6832 11 6 2.5637 -1.4588 -7.1480 12 6 1.1381 -1.4583 -7.6369 13 1 0.3240 -1.4713 -6.9273 14 6 0.8732 -1.4412 -8.9898 15 7 1.8646 -1.4200 -9.8537 16 14 -0.8938 -1.4398 -9.5957 17 1 -0.9080 -1.4134 -11.0804 18 1 -1.5825 -2.6649 -9.1158 19 1 -1.5955 -0.2403 -9.0725 20 7 1.9309 -0.5652 -4.8415 21 7 2.0184 -0.6908 1.1961 22 7 1.7849 -1.9171 1.5218 23 7 2.3780 -2.1707 2.6359 24 7 2.9978 -1.1162 3.0405 25 6 2.7992 -0.1667 2.1591 26 6 3.3380 1.2396 2.2146 27 6 2.1733 2.2315 2.2369 28 6 4.1802 1.4135 3.4800 29 6 4.2074 1.5016 0.9832 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.1487 0.5387 -2.5435 34 1 3.3574 -2.5850 -2.7515 35 1 3.7969 -3.2221 -5.2589 36 1 3.0778 -2.3415 -7.5285 37 1 3.0702 -0.5617 -7.5038 38 1 2.7822 -1.4205 -9.5391 39 1 1.5538 2.0448 3.1140 40 1 2.5630 3.2487 2.2766 41 1 1.5732 2.1076 1.3353 42 1 5.0099 0.7069 3.4641 43 1 4.5703 2.4305 3.5199 44 1 3.5607 1.2268 4.3572 45 1 3.6074 1.3776 0.0817 46 1 4.5975 2.5186 1.0236 47 1 5.0372 0.7949 0.9673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273479111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:02 Heat of formation + Delta-G solvation = 162.155078 kcal Electronic energy + Delta-G solvation = -30762.435463 eV Core-core repulsion = 26599.372662 eV Total energy + Delta-G solvation = -4163.062800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.46741 -41.07367 -39.84895 -37.92983 -36.18131 -35.22748 -33.85590 -32.40819 -31.56850 -30.76550 -29.55597 -28.03667 -28.00171 -26.63904 -25.86292 -24.23321 -23.99870 -22.97067 -21.73453 -20.79320 -20.35311 -19.84145 -18.12780 -17.54957 -17.29075 -16.89298 -16.56639 -16.18365 -15.88398 -15.16164 -14.98518 -14.69379 -14.46002 -14.17221 -13.85378 -13.75133 -13.38890 -13.31646 -13.17692 -13.01397 -12.89961 -12.62316 -12.59634 -12.39289 -12.32345 -12.28563 -12.01870 -11.94505 -11.70035 -11.46015 -11.28397 -11.26294 -11.15558 -10.91590 -10.68856 -10.35376 -10.22075 -10.18508 -9.88038 -9.11330 -8.65829 -8.40305 -7.72387 -6.65793 -4.40560 0.97702 1.45113 1.81498 2.09403 2.36229 2.64398 3.32442 3.33553 3.34780 3.38947 3.42868 3.53468 3.72085 3.86152 3.98426 4.07734 4.22441 4.34392 4.42356 4.60907 4.76862 4.87222 4.91241 5.07488 5.07986 5.12263 5.13711 5.23450 5.27514 5.32730 5.35935 5.44268 5.45526 5.50511 5.55213 5.64440 5.83236 5.85433 5.91501 6.22269 6.28598 6.45575 6.63185 7.03565 7.23149 7.55832 7.68533 7.76245 8.24278 8.35591 8.46229 8.52281 9.27717 10.71882 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020765 B = 0.002209 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.090570 B =12675.077638 C =12726.456333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 H 0.148 0.852 4 C 0.511 3.489 5 O -0.485 6.485 6 N -0.620 5.620 7 C 0.255 3.745 8 C -0.283 4.283 9 C 0.054 3.946 10 N -0.313 5.313 11 C 0.249 3.751 12 C -0.610 4.610 13 H 0.063 0.937 14 C 0.024 3.976 15 N -0.903 5.903 16 Si 1.077 2.923 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.285 1.285 20 N -0.295 5.295 21 N -0.290 5.290 22 N -0.064 5.064 23 N -0.079 5.079 24 N -0.299 5.299 25 C 0.195 3.805 26 C 0.013 3.987 27 C -0.152 4.152 28 C -0.131 4.131 29 C -0.152 4.152 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.413 0.587 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.047 0.953 37 H 0.036 0.964 38 H 0.267 0.733 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.082 0.918 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 10.691 23.441 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 H 0.165 0.835 4 C 0.293 3.707 5 O -0.355 6.355 6 N -0.268 5.268 7 C 0.002 3.998 8 C -0.314 4.314 9 C -0.096 4.096 10 N -0.095 5.095 11 C 0.131 3.869 12 C -0.648 4.648 13 H 0.082 0.918 14 C -0.181 4.181 15 N -0.538 5.538 16 Si 0.903 3.097 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.211 1.211 20 N -0.126 5.126 21 N -0.092 5.092 22 N -0.049 5.049 23 N -0.072 5.072 24 N -0.147 5.147 25 C -0.083 4.083 26 C 0.009 3.991 27 C -0.210 4.210 28 C -0.189 4.189 29 C -0.210 4.210 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.178 0.822 35 H 0.187 0.813 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.025 9.446 21.797 23.756 hybrid contribution 1.113 0.508 1.197 1.711 sum 1.087 9.955 22.993 25.079 Atomic orbital electron populations 1.22245 0.88880 1.06135 1.05146 1.21827 0.98718 0.97001 0.80753 0.83484 1.20003 0.81736 0.85481 0.83528 1.90784 1.35281 1.24086 1.85358 1.42132 1.51490 1.30757 1.02431 1.18970 0.99444 0.95061 0.86293 1.21510 1.10896 1.01724 0.97310 1.22586 0.99537 0.96480 0.90964 1.48837 1.34695 1.18321 1.07638 1.19810 1.00245 0.98160 0.68729 1.22078 0.90796 1.56989 0.94919 0.91827 1.25933 1.06593 0.93059 0.92544 1.70858 1.00213 1.45700 1.37034 0.83420 0.73117 0.76861 0.76274 1.20464 1.21192 1.21117 1.77349 1.21096 1.16595 0.97540 1.47995 1.34284 1.08903 1.18009 1.78974 1.19227 0.96000 1.10720 1.78652 1.07384 1.17832 1.03333 1.74980 1.19591 0.96595 1.23518 1.26038 0.95470 0.99682 0.87085 1.19282 0.96350 0.84145 0.99307 1.22119 0.96920 0.99266 1.02688 1.21748 0.99817 1.02484 0.94873 1.22101 0.99988 1.03817 0.95104 0.88389 0.89331 0.89773 0.75093 0.82250 0.81294 0.93497 0.94638 0.92256 0.91294 0.89936 0.92363 0.91310 0.91142 0.91318 0.92702 0.89897 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 9.31 37.16 0.35 -0.66 16 2 C 0.12 1.04 2.25 -69.08 -0.16 0.88 16 3 H 0.15 0.72 3.73 -51.93 -0.19 0.53 16 4 C 0.51 6.42 7.15 -10.98 -0.08 6.34 16 5 O -0.48 -8.16 13.01 5.55 0.07 -8.09 16 6 N -0.62 -8.03 5.34 -11.13 -0.06 -8.09 16 7 C 0.26 4.68 8.11 -154.38 -1.25 3.43 16 8 C -0.28 -5.35 9.61 -39.83 -0.38 -5.73 16 9 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 10 N -0.31 -6.97 3.67 -62.56 -0.23 -7.20 16 11 C 0.25 6.05 5.57 -5.19 -0.03 6.02 16 12 C -0.61 -16.60 9.24 -34.44 -0.32 -16.91 16 13 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 14 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 15 N -0.90 -25.67 13.65 55.43 0.76 -24.92 16 16 Si 1.08 24.23 29.90 -169.99 -5.08 19.14 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 N -0.29 -6.34 12.42 31.44 0.39 -5.95 16 21 N -0.29 -3.28 2.76 -52.93 -0.15 -3.42 16 22 N -0.06 -0.95 12.42 60.35 0.75 -0.20 16 23 N -0.08 -1.23 13.43 60.35 0.81 -0.42 16 24 N -0.30 -4.06 11.71 32.70 0.38 -3.68 16 25 C 0.20 2.07 6.40 -155.43 -1.00 1.07 16 26 C 0.01 0.08 0.75 -155.66 -0.12 -0.03 16 27 C -0.15 -0.59 8.31 37.16 0.31 -0.28 16 28 C -0.13 -0.77 8.00 37.16 0.30 -0.47 16 29 C -0.15 -0.92 8.31 37.16 0.31 -0.61 16 30 H 0.10 0.37 7.56 -51.93 -0.39 -0.02 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 3.83 8.24 -40.82 -0.34 3.50 16 34 H 0.16 3.00 5.92 -52.49 -0.31 2.69 16 35 H 0.17 2.66 8.06 -52.48 -0.42 2.24 16 36 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 37 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 38 H 0.27 7.42 7.22 -40.82 -0.29 7.12 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.06 0.17 5.58 -51.92 -0.29 -0.12 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.34 5.58 -51.93 -0.29 0.05 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -36.39 388.45 -5.23 -41.62 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.37 Total: 0.92 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.36 Total: -5.57 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 2.65 Total: -53.88 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.07 Total: -8.09 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.08 Total: 19.14 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.39 -5.23 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273479111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.776 kcal (2) G-P(sol) polarization free energy of solvation -36.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds