Wall clock time and date at job start Wed Apr 1 2020 05:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47497 * 2 1 4 4 C 1.50708 * 109.46676 * 240.00414 * 2 1 3 5 5 O 1.21289 * 119.99669 * 239.99833 * 4 2 1 6 6 N 1.34772 * 119.99727 * 60.00158 * 4 2 1 7 7 C 1.40163 * 119.99566 * 179.97438 * 6 4 2 8 8 C 1.40409 * 125.97252 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86602 * 179.76019 * 8 7 6 10 10 N 1.34966 * 107.86079 * 0.39163 * 9 8 7 11 11 C 1.46500 * 125.97782 * 179.87198 * 10 9 8 12 12 C 1.50706 * 109.47299 * 124.71059 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 N 1.31219 * 125.97499 * 180.02562 * 7 6 4 21 21 N 1.46501 * 109.47291 * 120.00811 * 2 1 3 22 22 N 1.29013 * 126.44123 * 60.01982 * 21 2 1 23 23 N 1.28736 * 108.80929 * 179.97438 * 22 21 2 24 24 N 1.28832 * 109.39885 * 0.02562 * 23 22 21 25 25 C 1.31074 * 107.99288 * 359.75096 * 24 23 22 26 26 C 1.50697 * 126.66327 * 180.24512 * 25 24 23 27 27 C 1.52998 * 109.47089 * 240.17342 * 26 25 24 28 28 C 1.52996 * 109.47080 * 0.17138 * 26 25 24 29 29 C 1.53003 * 109.47018 * 120.17513 * 26 25 24 30 30 H 1.08996 * 109.47124 * 59.99280 * 1 2 3 31 31 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46542 * 299.99479 * 1 2 3 33 33 H 0.96996 * 120.00403 * 359.97438 * 6 4 2 34 34 H 1.08002 * 126.06850 * 0.02562 * 8 7 6 35 35 H 1.08004 * 126.06994 * 180.24391 * 9 8 7 36 36 H 1.09004 * 109.47078 * 4.71821 * 11 10 9 37 37 H 1.08993 * 109.47364 * 244.71592 * 11 10 9 38 38 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 39 39 H 1.08994 * 109.47238 * 59.99828 * 27 26 25 40 40 H 1.09001 * 109.47167 * 180.02562 * 27 26 25 41 41 H 1.09007 * 109.47335 * 299.99924 * 27 26 25 42 42 H 1.08996 * 109.47295 * 60.00190 * 28 26 25 43 43 H 1.09004 * 109.47208 * 179.97438 * 28 26 25 44 44 H 1.09003 * 109.47278 * 300.00035 * 28 26 25 45 45 H 1.08994 * 109.47054 * 59.99549 * 29 26 25 46 46 H 1.09003 * 109.46767 * 180.02562 * 29 26 25 47 47 H 1.09002 * 109.46725 * 299.99909 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 2.7295 -1.6965 -1.1194 6 7 1.7066 -0.2498 -2.4546 7 6 2.1741 -0.9101 -3.5991 8 6 2.9847 -2.0565 -3.6165 9 6 3.2111 -2.3850 -4.9088 10 7 2.5777 -1.4791 -5.6832 11 6 2.5637 -1.4588 -7.1480 12 6 1.1381 -1.4583 -7.6369 13 1 0.3240 -1.4713 -6.9273 14 6 0.8732 -1.4412 -8.9898 15 7 1.8646 -1.4200 -9.8537 16 14 -0.8938 -1.4398 -9.5957 17 1 -0.9080 -1.4134 -11.0804 18 1 -1.5825 -2.6649 -9.1158 19 1 -1.5955 -0.2403 -9.0725 20 7 1.9309 -0.5652 -4.8415 21 7 2.0184 -0.6908 1.1961 22 7 1.7849 -1.9171 1.5218 23 7 2.3780 -2.1707 2.6359 24 7 2.9978 -1.1162 3.0405 25 6 2.7992 -0.1667 2.1591 26 6 3.3380 1.2396 2.2146 27 6 2.1733 2.2315 2.2369 28 6 4.1802 1.4135 3.4800 29 6 4.2074 1.5016 0.9832 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.1487 0.5387 -2.5435 34 1 3.3574 -2.5850 -2.7515 35 1 3.7969 -3.2221 -5.2589 36 1 3.0778 -2.3415 -7.5285 37 1 3.0702 -0.5617 -7.5038 38 1 2.7822 -1.4205 -9.5391 39 1 1.5538 2.0448 3.1140 40 1 2.5630 3.2487 2.2766 41 1 1.5732 2.1076 1.3353 42 1 5.0099 0.7069 3.4641 43 1 4.5703 2.4305 3.5199 44 1 3.5607 1.2268 4.3572 45 1 3.6074 1.3776 0.0817 46 1 4.5975 2.5186 1.0236 47 1 5.0372 0.7949 0.9673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273479111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:01 Heat of formation + Delta-G solvation = 137.083490 kcal Electronic energy + Delta-G solvation = -30763.522648 eV Core-core repulsion = 26599.372662 eV Total energy + Delta-G solvation = -4164.149986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.40449 -42.46413 -41.09363 -38.52650 -37.07423 -36.57911 -35.69057 -33.45364 -32.69593 -32.05741 -31.10234 -28.52837 -28.39681 -28.26374 -26.71257 -25.49100 -24.99355 -24.51905 -22.91473 -22.16633 -21.18407 -21.02545 -19.31239 -19.13384 -18.49021 -18.05122 -17.72456 -17.11255 -16.80429 -16.50720 -16.19110 -15.72870 -15.54069 -15.28088 -15.09401 -14.98840 -14.50273 -14.27824 -14.03190 -13.99246 -13.84226 -13.78445 -13.52477 -13.28707 -13.24929 -13.08099 -12.95087 -12.73768 -12.70738 -12.62291 -12.34909 -12.18481 -12.16088 -12.05474 -11.96025 -11.82085 -11.74670 -11.24273 -11.04358 -10.99622 -10.70125 -9.94211 -9.32472 -8.79074 -6.56921 0.05668 0.61705 0.64786 1.10750 1.13909 1.23267 1.51863 1.57616 1.78983 1.97125 2.04100 2.48464 2.72243 2.90811 3.00720 3.14243 3.26952 3.38878 3.78014 3.78366 3.91996 4.01067 4.05748 4.21879 4.39786 4.40171 4.48898 4.53330 4.57829 4.60064 4.68121 4.73336 4.73811 4.79658 4.85008 4.88999 4.93647 4.95807 4.96832 5.05561 5.21437 5.29514 5.38440 5.52391 5.69358 5.86441 5.98455 6.21977 6.38465 6.65326 6.87846 7.18739 7.47551 8.58030 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020765 B = 0.002209 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.090570 B =12675.077638 C =12726.456333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.129 3.871 3 H 0.190 0.810 4 C 0.513 3.487 5 O -0.528 6.528 6 N -0.606 5.606 7 C 0.269 3.731 8 C -0.292 4.292 9 C 0.056 3.944 10 N -0.340 5.340 11 C 0.259 3.741 12 C -0.621 4.621 13 H 0.047 0.953 14 C -0.019 4.019 15 N -0.923 5.923 16 Si 1.119 2.881 17 H -0.277 1.277 18 H -0.273 1.273 19 H -0.271 1.271 20 N -0.330 5.330 21 N -0.289 5.289 22 N -0.091 5.091 23 N -0.111 5.111 24 N -0.326 5.326 25 C 0.207 3.793 26 C 0.012 3.988 27 C -0.152 4.152 28 C -0.131 4.131 29 C -0.153 4.153 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.433 0.567 34 H 0.161 0.839 35 H 0.198 0.802 36 H 0.052 0.948 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.113 0.887 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 13.253 24.339 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 H 0.207 0.793 4 C 0.298 3.702 5 O -0.401 6.401 6 N -0.257 5.257 7 C 0.015 3.985 8 C -0.323 4.323 9 C -0.092 4.092 10 N -0.121 5.121 11 C 0.140 3.860 12 C -0.659 4.659 13 H 0.066 0.934 14 C -0.218 4.218 15 N -0.559 5.559 16 Si 0.940 3.060 17 H -0.202 1.202 18 H -0.198 1.198 19 H -0.197 1.197 20 N -0.161 5.161 21 N -0.091 5.091 22 N -0.077 5.077 23 N -0.104 5.104 24 N -0.173 5.173 25 C -0.071 4.071 26 C 0.009 3.991 27 C -0.209 4.209 28 C -0.189 4.189 29 C -0.211 4.211 30 H 0.146 0.854 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.272 0.728 34 H 0.179 0.821 35 H 0.215 0.785 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.132 0.868 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.183 12.033 22.729 25.745 hybrid contribution 1.562 -0.261 1.058 1.904 sum 0.379 11.772 23.786 26.543 Atomic orbital electron populations 1.22382 0.86592 1.05517 1.07907 1.22214 1.00324 0.97557 0.77499 0.79328 1.20780 0.80414 0.84833 0.84210 1.90773 1.37197 1.26184 1.85993 1.42162 1.51426 1.31048 1.01061 1.19255 0.97857 0.94552 0.86872 1.21652 1.11282 1.02192 0.97172 1.23131 0.98749 0.96426 0.90887 1.48602 1.36660 1.19856 1.07028 1.19453 0.98669 0.97489 0.70411 1.22267 0.91785 1.56894 0.94924 0.93419 1.27260 1.09557 0.92087 0.92944 1.70951 1.00331 1.47263 1.37395 0.82890 0.69285 0.77873 0.75990 1.20202 1.19833 1.19674 1.77272 1.22708 1.17559 0.98554 1.48199 1.34102 1.08133 1.18649 1.78887 1.20070 0.97871 1.10831 1.78609 1.08511 1.19157 1.04120 1.74902 1.20387 0.97013 1.25035 1.26888 0.93696 1.00687 0.85808 1.19628 0.97563 0.82173 0.99765 1.22188 0.95838 0.99615 1.03292 1.21774 0.99007 1.03727 0.94368 1.22153 0.99175 1.05046 0.94701 0.85435 0.91667 0.87207 0.72751 0.82135 0.78473 0.93044 0.96187 0.92956 0.91542 0.87191 0.90997 0.93276 0.88146 0.91993 0.92608 0.86792 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.31 71.98 0.67 -0.82 16 2 C 0.13 1.82 2.25 44.25 0.10 1.92 16 3 H 0.19 1.03 3.73 -2.39 -0.01 1.03 16 4 C 0.51 12.10 7.15 87.66 0.63 12.73 16 5 O -0.53 -17.67 13.01 -3.06 -0.04 -17.71 16 6 N -0.61 -14.54 5.34 -307.51 -1.64 -16.18 16 7 C 0.27 9.67 8.11 133.32 1.08 10.75 16 8 C -0.29 -10.93 9.61 22.11 0.21 -10.72 16 9 C 0.06 2.15 11.44 83.52 0.96 3.10 16 10 N -0.34 -15.20 3.67 -351.83 -1.29 -16.49 16 11 C 0.26 12.82 5.57 85.64 0.48 13.30 16 12 C -0.62 -34.07 9.24 25.60 0.24 -33.84 16 13 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 14 C -0.02 -1.02 5.46 84.65 0.46 -0.55 16 15 N -0.92 -52.78 13.65 21.45 0.29 -52.49 16 16 Si 1.12 48.12 29.90 68.60 2.05 50.17 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 N -0.33 -14.13 12.42 -54.45 -0.68 -14.81 16 21 N -0.29 -6.20 2.76 -321.36 -0.89 -7.08 16 22 N -0.09 -2.71 12.42 37.02 0.46 -2.25 16 23 N -0.11 -3.57 13.43 37.01 0.50 -3.07 16 24 N -0.33 -8.97 11.71 -50.45 -0.59 -9.56 16 25 C 0.21 4.16 6.40 138.13 0.88 5.05 16 26 C 0.01 0.13 0.75 -52.93 -0.04 0.09 16 27 C -0.15 -0.52 8.31 71.98 0.60 0.08 16 28 C -0.13 -1.28 8.00 71.98 0.58 -0.71 16 29 C -0.15 -1.41 8.31 71.98 0.60 -0.82 16 30 H 0.13 0.41 7.56 -2.39 -0.02 0.39 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.43 6.75 8.24 -92.71 -0.76 5.98 16 34 H 0.16 6.05 5.92 -2.91 -0.02 6.03 16 35 H 0.20 6.05 8.06 -2.91 -0.02 6.03 16 36 H 0.05 2.47 7.94 -2.39 -0.02 2.45 16 37 H 0.02 1.05 8.00 -2.39 -0.02 1.03 16 38 H 0.26 14.73 7.22 -92.71 -0.67 14.06 16 39 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.07 0.04 5.58 -2.38 -0.01 0.03 16 42 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.49 5.58 -2.39 -0.01 0.48 16 46 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -83.12 388.45 5.97 -77.15 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.36 Total: 12.75 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 7.44 Total: -0.44 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -3.84 Total: -121.93 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.04 Total: -17.71 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.05 Total: 50.17 kcal Total: -83.12 5.97 -77.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273479111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.238 kcal (2) G-P(sol) polarization free energy of solvation -83.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds