Wall clock time and date at job start Wed Apr 1 2020 04:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.49406 * 2 1 4 4 C 1.53093 * 109.48479 * 120.03385 * 2 1 3 5 5 C 1.53176 * 109.16667 * 177.58838 * 4 2 1 6 6 H 1.09000 * 109.54232 * 62.88627 * 5 4 2 7 7 C 1.52996 * 109.54392 * 183.06315 * 5 4 2 8 8 C 1.52994 * 109.47089 * 184.82593 * 7 5 4 9 9 N 1.46500 * 109.47017 * 180.02562 * 8 7 5 10 10 C 1.34781 * 120.00204 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99516 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00207 * 179.97438 * 10 9 8 13 13 C 1.50700 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.38310 * 119.92661 * 269.72674 * 13 12 10 15 15 C 1.38101 * 120.06758 * 179.72449 * 14 13 12 16 16 C 1.38882 * 119.92998 * 0.52316 * 15 14 13 17 17 O 1.35743 * 120.07055 * 179.72777 * 16 15 14 18 18 C 1.34832 * 117.00485 * 174.48991 * 17 16 15 19 19 H 1.08000 * 119.99362 * 5.06014 * 18 17 16 20 20 C 1.38651 * 120.00365 * 185.05744 * 18 17 16 21 21 N 1.31548 * 120.00067 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99963 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46989 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47525 * 119.99788 * 22 20 18 25 25 H 1.48501 * 109.46844 * 239.99934 * 22 20 18 26 26 C 1.38885 * 119.86011 * 359.75000 * 16 15 14 27 27 C 1.38094 * 119.93352 * 0.02562 * 26 16 15 28 28 C 1.53171 * 109.03840 * 303.02300 * 5 4 2 29 29 C 1.53096 * 109.16458 * 56.97902 * 28 5 4 30 30 O 1.42902 * 109.41313 * 302.39067 * 29 28 5 31 31 H 1.08995 * 109.46649 * 299.96842 * 1 2 3 32 32 H 1.09001 * 109.47207 * 59.96390 * 1 2 3 33 33 H 1.09000 * 109.46912 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.51809 * 57.68158 * 4 2 1 35 35 H 1.08998 * 109.57014 * 297.53036 * 4 2 1 36 36 H 1.09005 * 109.47015 * 304.82732 * 7 5 4 37 37 H 1.08998 * 109.46817 * 64.82346 * 7 5 4 38 38 H 1.09005 * 109.47305 * 299.99961 * 8 7 5 39 39 H 1.08998 * 109.47493 * 60.00167 * 8 7 5 40 40 H 0.96999 * 120.00068 * 359.97438 * 9 8 7 41 41 H 1.09000 * 109.47413 * 299.99975 * 12 10 9 42 42 H 1.08998 * 109.47097 * 60.00402 * 12 10 9 43 43 H 1.07998 * 119.96520 * 359.97438 * 14 13 12 44 44 H 1.07997 * 120.03420 * 180.27917 * 15 14 13 45 45 H 0.97001 * 120.00239 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.02963 * 179.97438 * 26 16 15 47 47 H 1.07995 * 119.96948 * 180.02562 * 27 26 16 48 48 H 1.09001 * 109.52447 * 176.88859 * 28 5 4 49 49 H 1.09007 * 109.52340 * 297.07243 * 28 5 4 50 50 H 1.09008 * 109.48057 * 182.40965 * 29 28 5 51 51 H 1.08998 * 109.48992 * 62.37836 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 1.2495 5 6 3.5712 -0.7710 1.2120 6 1 3.9690 0.2434 1.2407 7 6 4.0879 -1.5578 2.4181 8 6 5.6166 -1.5036 2.4454 9 7 6.1114 -2.2575 3.6000 10 6 7.4368 -2.3485 3.8277 11 8 8.2197 -1.8067 3.0765 12 6 7.9457 -3.1235 5.0157 13 6 9.4515 -3.0703 5.0426 14 6 10.1881 -4.0429 4.3911 15 6 11.5681 -3.9938 4.4090 16 6 12.2163 -2.9724 5.0913 17 8 13.5727 -2.9245 5.1154 18 6 14.1370 -1.8469 5.6970 19 1 13.5168 -1.1120 6.1887 20 6 15.5133 -1.6822 5.6638 21 7 16.2686 -2.5776 5.0654 22 14 16.2950 -0.1895 6.4702 23 1 15.2355 0.6603 7.0709 24 1 17.2339 -0.6347 7.5311 25 1 17.0368 0.5930 5.4491 26 6 11.4738 -2.0004 5.7492 27 6 10.0941 -2.0525 5.7237 28 6 4.0177 -1.4600 -0.0811 29 6 3.4307 -0.7091 -1.2792 30 8 2.0066 -0.6741 -1.1665 31 1 -0.3632 0.5133 0.8903 32 1 -0.3634 0.5144 -0.8897 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6443 -1.7375 1.2707 35 1 1.7149 -0.1855 2.1403 36 1 3.6923 -1.1194 3.3344 37 1 3.7624 -2.5952 2.3417 38 1 6.0122 -1.9420 1.5291 39 1 5.9422 -0.4662 2.5218 40 1 5.4853 -2.6911 4.2006 41 1 7.5507 -2.6849 5.9320 42 1 7.6198 -4.1608 4.9395 43 1 9.6834 -4.8394 3.8645 44 1 12.1427 -4.7511 3.8964 45 1 17.2315 -2.4622 5.0419 46 1 11.9751 -1.2052 6.2809 47 1 9.5162 -1.2967 6.2347 48 1 5.1059 -1.4498 -0.1423 49 1 3.6613 -2.4902 -0.0867 50 1 3.7100 -1.2201 -2.2007 51 1 3.8192 0.3091 -1.2960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273566535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:45 Heat of formation + Delta-G solvation = -110.992781 kcal Electronic energy + Delta-G solvation = -29028.924702 eV Core-core repulsion = 24892.972163 eV Total energy + Delta-G solvation = -4135.952539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.18578 -39.67020 -38.74538 -36.69411 -36.15020 -34.11137 -33.21308 -32.43674 -31.44956 -30.11095 -29.84767 -28.14080 -26.57793 -25.16002 -24.15522 -23.51379 -21.92364 -21.49548 -21.10750 -20.57358 -19.88275 -17.93437 -17.03643 -16.82476 -16.75154 -16.48011 -15.95550 -15.92469 -15.27857 -14.88945 -14.65343 -14.55954 -14.43777 -14.14709 -13.77654 -13.64004 -13.42445 -13.28060 -13.08814 -12.81769 -12.76258 -12.64855 -12.44129 -12.34811 -12.24236 -11.95689 -11.70640 -11.55825 -11.44427 -11.27601 -11.23722 -10.85078 -10.80203 -10.72273 -10.67131 -10.55867 -10.38735 -9.90631 -9.64751 -9.27630 -9.11532 -8.78351 -8.10043 -7.11360 -6.40644 -3.99102 2.29705 2.31181 2.80967 3.13080 3.16451 3.21843 3.22467 3.35581 4.00538 4.11279 4.21138 4.34170 4.49354 4.59062 4.65683 4.77224 4.78512 4.89824 4.99462 5.03210 5.07168 5.12239 5.13347 5.21465 5.28051 5.28665 5.31674 5.36750 5.37505 5.42090 5.52195 5.55266 5.62214 5.67348 5.70851 5.73606 5.77331 5.81665 5.89802 5.93451 6.26606 6.37209 6.46892 6.75361 6.83557 6.96549 7.10502 7.28920 7.42031 7.47232 7.50838 7.89140 8.04890 8.35795 9.05285 9.76244 10.77663 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.001498 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.330421 B =18688.286319 C =19052.186389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.057 0.943 4 C -0.144 4.144 5 C -0.087 4.087 6 H 0.075 0.925 7 C -0.124 4.124 8 C 0.118 3.882 9 N -0.742 5.742 10 C 0.507 3.493 11 O -0.520 6.520 12 C -0.080 4.080 13 C -0.170 4.170 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.057 4.057 28 C -0.155 4.155 29 C 0.061 3.939 30 O -0.382 6.382 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.073 0.927 50 H 0.094 0.906 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.410 2.774 -5.606 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.075 0.925 4 C -0.181 4.181 5 C -0.106 4.106 6 H 0.093 0.907 7 C -0.161 4.161 8 C -0.006 4.006 9 N -0.397 5.397 10 C 0.294 3.706 11 O -0.394 6.394 12 C -0.120 4.120 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.252 4.252 27 C -0.075 4.075 28 C -0.193 4.193 29 C -0.016 4.016 30 O -0.301 6.301 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.231 0.769 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.121 0.879 48 H 0.098 0.902 49 H 0.092 0.908 50 H 0.113 0.887 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -30.503 2.911 -6.427 31.308 hybrid contribution 0.292 0.729 0.889 1.187 sum -30.211 3.641 -5.538 30.930 Atomic orbital electron populations 1.21768 0.93112 1.02950 1.02433 1.22091 0.95022 0.95015 0.85167 0.92511 1.22277 0.95295 1.02116 0.98449 1.21136 0.95241 0.99857 0.94350 0.90663 1.21812 0.94575 1.01227 0.98529 1.21341 0.93124 0.96796 0.89341 1.46103 1.07554 1.56111 1.29884 1.21073 0.81452 0.80898 0.87182 1.90749 1.55416 1.45531 1.47711 1.20405 0.94876 1.00536 0.96140 1.18644 0.92015 0.99592 1.06889 1.20402 0.92888 0.97348 0.97194 1.20156 0.93670 1.01101 1.06131 1.19380 0.84858 0.93175 0.92309 1.83974 1.13515 1.41827 1.68951 1.21378 0.90783 1.00212 1.34293 0.89046 1.25278 0.95230 0.98828 0.97209 1.70047 1.05433 1.33914 1.40462 0.85651 0.79262 0.79862 0.78665 1.19128 1.20176 1.20166 1.21106 0.93800 1.02810 1.07445 1.20501 0.93856 0.95932 0.97221 1.22339 1.01719 1.00564 0.94676 1.22576 0.80793 0.99702 0.98488 1.87932 1.21182 1.77993 1.43009 0.91095 0.91860 0.91804 0.90879 0.90814 0.91107 0.91113 0.91493 0.91781 0.76926 0.89068 0.89016 0.87404 0.86548 0.92133 0.85594 0.87867 0.90248 0.90847 0.88746 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.56 37.16 0.36 -0.39 16 2 C 0.08 0.54 3.26 -26.68 -0.09 0.45 16 3 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 4 C -0.14 -0.78 4.71 -26.59 -0.13 -0.91 16 5 C -0.09 -0.51 2.27 -90.44 -0.21 -0.72 16 6 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 7 C -0.12 -0.71 4.81 -26.74 -0.13 -0.84 16 8 C 0.12 1.04 5.44 -4.04 -0.02 1.02 16 9 N -0.74 -7.03 5.56 -60.30 -0.33 -7.36 16 10 C 0.51 7.02 7.82 -10.99 -0.09 6.94 16 11 O -0.52 -9.96 16.03 5.56 0.09 -9.87 16 12 C -0.08 -1.00 5.83 -29.04 -0.17 -1.17 16 13 C -0.17 -3.02 4.38 -104.57 -0.46 -3.48 16 14 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 15 C -0.19 -4.26 9.99 -39.39 -0.39 -4.66 16 16 C 0.16 3.96 6.65 -39.10 -0.26 3.70 16 17 O -0.18 -5.29 9.76 0.06 0.00 -5.29 16 18 C -0.39 -11.23 9.49 30.88 0.29 -10.94 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 22 Si 0.94 21.01 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 28 C -0.16 -1.02 5.10 -26.59 -0.14 -1.15 16 29 C 0.06 0.42 6.84 37.21 0.25 0.67 16 30 O -0.38 -3.22 10.41 -35.23 -0.37 -3.58 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.68 6.66 -51.93 -0.35 0.33 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.40 2.44 8.47 -40.82 -0.35 2.10 16 41 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 42 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 47 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 48 H 0.08 0.54 6.75 -51.93 -0.35 0.19 16 49 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 50 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 51 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 413.71 15.07 6.23 6.23 Total: -1.00 -35.50 413.71 -9.38 -44.88 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.35 Total: 3.23 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.39 Total: -19.14 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.42 Total: -32.44 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.28 Total: -18.74 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.50 -9.38 -44.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273566535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.113 kcal (2) G-P(sol) polarization free energy of solvation -35.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds