Wall clock time and date at job start Wed Apr 1 2020 05:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46755 * 2 1 4 4 C 1.52992 * 109.47283 * 239.99745 * 2 1 3 5 5 O 1.42900 * 109.47362 * 179.16003 * 4 2 1 6 6 N 1.46504 * 109.47023 * 119.99797 * 2 1 3 7 7 C 1.46505 * 119.99524 * 244.98394 * 6 2 1 8 8 C 1.52997 * 109.46832 * 270.00015 * 7 6 2 9 9 C 1.53789 * 113.61298 * 185.00454 * 8 7 6 10 10 C 1.53778 * 87.17270 * 220.06286 * 9 8 7 11 11 C 1.53782 * 87.08210 * 25.38864 * 10 9 8 12 12 C 1.34772 * 120.00159 * 64.98537 * 6 2 1 13 13 O 1.21281 * 119.99907 * 354.57742 * 12 6 2 14 14 C 1.50699 * 119.99846 * 174.57715 * 12 6 2 15 15 C 1.50700 * 109.46866 * 185.05090 * 14 12 6 16 16 C 1.38306 * 119.92624 * 269.72057 * 15 14 12 17 17 C 1.38103 * 120.06782 * 179.72279 * 16 15 14 18 18 C 1.38879 * 119.92688 * 0.57684 * 17 16 15 19 19 O 1.35753 * 120.06818 * 179.67826 * 18 17 16 20 20 C 1.34832 * 116.99958 * 174.47440 * 19 18 17 21 21 H 1.07999 * 120.00019 * 5.06175 * 20 19 18 22 22 C 1.38656 * 119.99838 * 185.05813 * 20 19 18 23 23 N 1.31556 * 119.99943 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00137 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47137 * 90.00030 * 24 22 20 26 26 H 1.48500 * 109.47196 * 210.00086 * 24 22 20 27 27 H 1.48500 * 109.46963 * 329.99996 * 24 22 20 28 28 C 1.38884 * 119.86512 * 359.70212 * 18 17 16 29 29 C 1.38098 * 119.93015 * 359.97438 * 28 18 17 30 30 H 1.09001 * 109.47635 * 304.89291 * 1 2 3 31 31 H 1.08995 * 109.47326 * 64.89600 * 1 2 3 32 32 H 1.09005 * 109.46841 * 184.89344 * 1 2 3 33 33 H 1.09004 * 109.47407 * 299.16011 * 4 2 1 34 34 H 1.09008 * 109.47484 * 59.16067 * 4 2 1 35 35 H 0.96700 * 114.00250 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.46439 * 150.00108 * 7 6 2 37 37 H 1.09001 * 109.47220 * 30.00178 * 7 6 2 38 38 H 1.08997 * 112.91252 * 316.25242 * 8 7 6 39 39 H 1.08999 * 113.61595 * 105.46822 * 9 8 7 40 40 H 1.09008 * 113.61238 * 334.65143 * 9 8 7 41 41 H 1.09001 * 113.61582 * 139.94131 * 10 9 8 42 42 H 1.09004 * 113.60943 * 270.84176 * 10 9 8 43 43 H 1.08999 * 113.61289 * 89.11731 * 11 10 9 44 44 H 1.09006 * 113.61124 * 219.93650 * 11 10 9 45 45 H 1.09002 * 109.46982 * 305.04439 * 14 12 6 46 46 H 1.08998 * 109.47323 * 65.05120 * 14 12 6 47 47 H 1.08001 * 119.96793 * 359.97438 * 16 15 14 48 48 H 1.07996 * 120.03999 * 180.27358 * 17 16 15 49 49 H 0.97000 * 120.00385 * 180.02562 * 23 22 20 50 50 H 1.07995 * 120.03571 * 179.97438 * 28 18 17 51 51 H 1.07999 * 119.96540 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 3.4689 -0.7042 -1.2591 6 7 2.0183 -0.6906 1.1962 7 6 2.7683 0.0494 2.2142 8 6 4.2618 -0.0035 1.8863 9 6 5.1519 0.6416 2.9617 10 6 5.9919 1.2202 1.8109 11 6 4.7273 1.1196 0.9418 12 6 1.7776 -2.0065 1.3601 13 8 1.0743 -2.5975 0.5684 14 6 2.3825 -2.7434 2.5272 15 6 2.0649 -4.2121 2.4130 16 6 0.9158 -4.7168 2.9939 17 6 0.6189 -6.0613 2.8861 18 6 1.4819 -6.9088 2.2037 19 8 1.1963 -8.2320 2.1016 20 6 2.0139 -8.9770 1.3306 21 1 2.8969 -8.5338 0.8945 22 6 1.7209 -10.3121 1.0976 23 7 2.5189 -11.0391 0.3457 24 14 0.1932 -11.0784 1.8514 25 1 -0.9512 -10.9215 0.9182 26 1 0.4348 -12.5224 2.1000 27 1 -0.1186 -10.4005 3.1354 28 6 2.6381 -6.3999 1.6264 29 6 2.9259 -5.0534 1.7319 30 1 -0.3634 0.5879 0.8429 31 1 -0.3634 0.4360 -0.9305 32 1 -0.3633 -1.0240 0.0877 33 1 1.6891 -1.7532 -1.2416 34 1 1.6645 -0.2163 -2.1392 35 1 3.8622 -1.1446 -2.0248 36 1 2.5948 -0.4005 3.1918 37 1 2.4358 1.0873 2.2277 38 1 4.5945 -0.9958 1.5819 39 1 5.6901 -0.0816 3.5745 40 1 4.6407 1.4008 3.5538 41 1 6.3227 2.2443 1.9838 42 1 6.7985 0.5629 1.4859 43 1 4.0989 2.0094 0.9808 44 1 4.9229 0.7838 -0.0766 45 1 3.4636 -2.6042 2.5240 46 1 1.9687 -2.3535 3.4571 47 1 0.2477 -4.0581 3.5290 48 1 -0.2808 -6.4541 3.3362 49 1 2.3138 -11.9730 0.1824 50 1 3.3113 -7.0566 1.0954 51 1 3.8249 -4.6572 1.2835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275213935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:10 Heat of formation + Delta-G solvation = -66.506765 kcal Electronic energy + Delta-G solvation = -31284.060339 eV Core-core repulsion = 27150.036858 eV Total energy + Delta-G solvation = -4134.023481 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.53032 -39.11801 -38.64843 -37.16623 -36.43244 -35.20783 -32.83143 -32.30982 -30.94753 -30.16854 -28.06893 -26.82896 -26.13808 -25.75285 -24.89220 -23.22567 -22.38346 -22.00566 -20.44785 -19.58889 -18.71407 -17.83194 -17.43880 -17.23313 -16.92535 -16.43961 -15.77053 -15.50285 -14.86685 -14.75225 -14.56473 -14.27465 -13.96811 -13.86677 -13.73234 -13.47051 -13.33673 -13.30959 -12.87110 -12.66514 -12.60476 -12.42711 -12.25949 -12.22650 -12.13848 -12.10806 -11.74295 -11.44360 -11.26034 -11.11400 -10.87971 -10.83922 -10.70819 -10.62285 -10.51414 -10.31471 -10.17328 -10.11002 -9.33125 -9.28276 -8.80980 -8.60464 -8.16982 -7.23726 -6.37158 -4.03343 2.22191 2.22561 2.80369 2.98317 3.25190 3.29253 3.43770 4.01617 4.27828 4.36135 4.40980 4.52161 4.55152 4.65101 4.79597 4.91523 4.91766 5.06555 5.10494 5.16174 5.18800 5.21917 5.26918 5.32020 5.35827 5.42376 5.48222 5.49333 5.55114 5.60783 5.63970 5.68971 5.72660 5.78178 5.82826 5.84532 6.01505 6.05222 6.12705 6.19453 6.31742 6.40059 6.61353 6.63361 6.86085 7.09079 7.29559 7.37274 7.43335 7.51748 7.68064 7.85783 8.09285 8.37693 8.98519 9.61927 10.70739 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.002432 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.635008 B =11510.488887 C =11841.455606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.156 3.844 3 H 0.085 0.915 4 C 0.054 3.946 5 O -0.565 6.565 6 N -0.606 5.606 7 C 0.122 3.878 8 C -0.121 4.121 9 C -0.138 4.138 10 C -0.145 4.145 11 C -0.128 4.128 12 C 0.518 3.482 13 O -0.521 6.521 14 C -0.082 4.082 15 C -0.157 4.157 16 C -0.061 4.061 17 C -0.191 4.191 18 C 0.161 3.839 19 O -0.219 6.219 20 C -0.388 4.388 21 H 0.106 0.894 22 C 0.062 3.938 23 N -0.882 5.882 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.260 1.260 28 C -0.219 4.219 29 C -0.059 4.059 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.375 0.625 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.279 0.721 50 H 0.132 0.868 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 27.854 2.422 28.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 H 0.103 0.897 4 C -0.024 4.024 5 O -0.370 6.370 6 N -0.341 5.341 7 C -0.001 4.001 8 C -0.140 4.140 9 C -0.176 4.176 10 C -0.182 4.182 11 C -0.165 4.165 12 C 0.307 3.693 13 O -0.396 6.396 14 C -0.121 4.121 15 C -0.158 4.158 16 C -0.079 4.079 17 C -0.210 4.210 18 C 0.109 3.891 19 O -0.124 6.124 20 C -0.463 4.463 21 H 0.123 0.877 22 C -0.140 4.140 23 N -0.520 5.520 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.238 4.238 29 C -0.077 4.077 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.221 0.779 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.127 0.873 48 H 0.134 0.866 49 H 0.089 0.911 50 H 0.149 0.851 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.903 27.483 2.555 27.667 hybrid contribution -0.300 -0.618 -0.464 0.829 sum 1.603 26.866 2.091 26.994 Atomic orbital electron populations 1.22157 0.94328 1.04480 1.01781 1.20922 0.93873 0.95879 0.84047 0.89721 1.22671 0.81335 1.02075 0.96345 1.86442 1.19484 1.81290 1.49793 1.47943 1.55861 1.08910 1.21342 1.21624 0.90617 0.96730 0.91140 1.22979 0.94160 0.99777 0.97097 1.22940 0.98111 1.00127 0.96427 1.22807 0.97231 1.00798 0.97361 1.22908 0.96496 0.97726 0.99361 1.20856 0.80320 0.80862 0.87228 1.90653 1.37016 1.66820 1.45135 1.20502 1.01610 0.93369 0.96667 1.18735 0.98191 0.92625 1.06295 1.20390 0.95376 0.93935 0.98230 1.20145 1.00956 0.92771 1.07132 1.19111 0.92669 0.83974 0.93300 1.83571 1.51943 1.14967 1.61954 1.20768 1.05936 0.92580 1.27042 0.87679 1.24459 0.98581 0.95124 0.95869 1.69648 1.37341 1.08657 1.36361 0.86183 0.82088 0.77900 0.80746 1.19916 1.20835 1.18362 1.21213 0.99717 0.95816 1.07065 1.20550 0.97836 0.92923 0.96438 0.92290 0.91915 0.89995 0.90763 0.93696 0.77867 0.90308 0.90742 0.88748 0.91458 0.90275 0.91932 0.90405 0.91113 0.90351 0.89092 0.89200 0.87309 0.86631 0.91123 0.85061 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.25 37.16 0.34 -1.29 16 2 C 0.16 1.53 2.95 -67.93 -0.20 1.33 16 3 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 4 C 0.05 0.57 6.23 37.15 0.23 0.80 16 5 O -0.57 -5.63 12.07 -35.23 -0.43 -6.05 16 6 N -0.61 -6.30 2.30 -166.11 -0.38 -6.68 16 7 C 0.12 0.95 4.94 -4.04 -0.02 0.93 16 8 C -0.12 -0.95 3.74 -89.71 -0.34 -1.29 16 9 C -0.14 -0.92 7.64 -25.92 -0.20 -1.12 16 10 C -0.14 -1.01 8.08 -25.92 -0.21 -1.22 16 11 C -0.13 -0.98 7.49 -25.83 -0.19 -1.17 16 12 C 0.52 7.10 7.05 -10.99 -0.08 7.02 16 13 O -0.52 -9.15 12.25 5.56 0.07 -9.08 16 14 C -0.08 -1.05 4.40 -29.04 -0.13 -1.18 16 15 C -0.16 -2.70 4.38 -104.57 -0.46 -3.16 16 16 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 17 C -0.19 -3.97 9.99 -39.39 -0.39 -4.36 16 18 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 19 O -0.22 -5.97 8.59 0.03 0.00 -5.97 16 20 C -0.39 -11.21 9.95 30.89 0.31 -10.91 16 21 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 22 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 23 N -0.88 -25.97 13.96 55.48 0.77 -25.20 16 24 Si 0.91 22.18 28.62 -169.99 -4.86 17.31 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.26 -6.37 7.11 56.52 0.40 -5.96 16 28 C -0.22 -4.93 9.17 -39.39 -0.36 -5.29 16 29 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.05 6.25 -51.93 -0.32 0.72 16 33 H 0.07 1.02 5.98 -51.93 -0.31 0.71 16 34 H 0.04 0.40 8.14 -51.92 -0.42 -0.03 16 35 H 0.38 2.63 9.12 45.56 0.42 3.05 16 36 H 0.08 0.55 6.62 -51.93 -0.34 0.20 16 37 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 38 H 0.09 0.94 7.39 -51.93 -0.38 0.55 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.45 8.10 -51.92 -0.42 0.03 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.50 7.90 -51.93 -0.41 0.09 16 44 H 0.08 0.72 6.80 -51.93 -0.35 0.36 16 45 H 0.09 1.03 7.01 -51.93 -0.36 0.67 16 46 H 0.09 0.94 7.44 -51.93 -0.39 0.56 16 47 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 48 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 49 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.13 3.10 5.64 -52.49 -0.30 2.80 16 51 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 406.44 15.07 6.12 6.12 Total: -1.00 -32.95 406.44 -8.73 -41.68 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.21 Total: 6.44 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -2.82 Total: -18.59 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.39 Total: -31.87 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.36 Total: -21.10 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.95 -8.73 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275213935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.824 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds