Wall clock time and date at job start Wed Apr 1 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47058 * 2 1 4 4 C 1.42899 * 113.99678 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.85344 * 341.19437 * 4 3 2 6 6 C 1.53782 * 113.61428 * 112.50664 * 4 3 2 7 7 C 1.53778 * 87.08261 * 139.97917 * 6 4 3 8 8 C 1.52999 * 113.69045 * 220.00603 * 7 6 4 9 9 O 1.42899 * 109.47512 * 284.00371 * 8 7 6 10 10 N 1.46507 * 113.61651 * 89.11581 * 7 6 4 11 11 C 1.34779 * 119.99954 * 195.18005 * 10 7 6 12 12 O 1.21584 * 119.99749 * 4.13765 * 11 10 7 13 13 C 1.47638 * 119.99673 * 184.13069 * 11 10 7 14 14 C 1.40014 * 119.89310 * 180.02562 * 13 11 10 15 15 C 1.36315 * 120.10459 * 179.97438 * 14 13 11 16 16 C 1.40888 * 119.89544 * 0.02562 * 15 14 13 17 17 C 1.41108 * 120.10488 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99718 * 19.72678 * 17 16 15 19 19 C 1.40224 * 120.00166 * 199.72120 * 17 16 15 20 20 N 1.30647 * 119.99979 * 216.06378 * 19 17 16 21 21 Si 1.86799 * 119.99783 * 36.05822 * 19 17 16 22 22 H 1.48496 * 109.47480 * 266.04722 * 21 19 17 23 23 H 1.48501 * 109.47161 * 26.05060 * 21 19 17 24 24 H 1.48508 * 109.46963 * 146.04737 * 21 19 17 25 25 C 1.40888 * 119.78999 * 0.24860 * 16 15 14 26 26 C 1.36316 * 119.89312 * 359.48950 * 25 16 15 27 27 C 1.53779 * 87.08304 * 334.56874 * 7 6 4 28 28 C 1.52993 * 113.61745 * 139.98593 * 27 7 6 29 29 C 1.53001 * 113.60901 * 270.88605 * 27 7 6 30 30 H 1.09008 * 109.47174 * 59.99766 * 1 2 3 31 31 H 1.08999 * 109.47615 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47057 * 300.00104 * 1 2 3 33 33 H 1.09007 * 109.47141 * 240.00366 * 2 1 3 34 34 H 1.09000 * 109.47499 * 120.00208 * 2 1 3 35 35 H 1.09000 * 113.61327 * 25.42694 * 6 4 3 36 36 H 1.08999 * 113.61357 * 254.52496 * 6 4 3 37 37 H 1.09003 * 109.47519 * 44.00444 * 8 7 6 38 38 H 1.09004 * 109.47523 * 164.00379 * 8 7 6 39 39 H 0.96699 * 114.00329 * 180.02562 * 9 8 7 40 40 H 0.97000 * 119.99431 * 15.18121 * 10 7 6 41 41 H 1.07997 * 119.94602 * 0.02562 * 14 13 11 42 42 H 1.08009 * 120.05253 * 179.97438 * 15 14 13 43 43 H 0.96994 * 120.00195 * 5.08967 * 20 19 17 44 44 H 1.08000 * 120.04963 * 179.73026 * 25 16 15 45 45 H 1.08002 * 119.94863 * 180.25615 * 26 25 16 46 46 H 1.08992 * 109.47367 * 75.02846 * 28 27 7 47 47 H 1.08997 * 109.47160 * 195.03462 * 28 27 7 48 48 H 1.09001 * 109.47047 * 315.02496 * 28 27 7 49 49 H 1.08996 * 109.47354 * 60.00224 * 29 27 7 50 50 H 1.09006 * 109.47042 * 179.97438 * 29 27 7 51 51 H 1.09000 * 109.47553 * 299.99188 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9277 0.5457 0.3247 6 6 4.0029 2.0462 -1.3010 7 6 4.9899 2.8313 -0.4212 8 6 5.2330 4.2645 -0.8983 9 8 6.0953 4.2475 -2.0377 10 7 6.2321 2.1063 -0.1419 11 6 7.0481 2.5233 0.8464 12 8 6.7180 3.4545 1.5550 13 6 8.3425 1.8490 1.0687 14 6 9.1883 2.2836 2.0964 15 6 10.3842 1.6638 2.3058 16 6 10.7690 0.5847 1.4857 17 6 12.0062 -0.0597 1.6982 18 1 12.5102 0.0389 2.6483 19 6 12.5812 -0.8281 0.6759 20 7 13.2390 -1.9181 0.9691 21 14 12.4066 -0.2932 -1.1054 22 1 11.2318 -0.9690 -1.7123 23 1 12.2160 1.1784 -1.1639 24 1 13.6333 -0.6637 -1.8560 25 6 9.9171 0.1548 0.4492 26 6 8.7207 0.7773 0.2509 27 6 3.9483 2.7252 0.7052 28 6 4.5592 2.4540 2.0814 29 6 2.9399 3.8758 0.7175 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.2993 2.6801 -1.8406 36 1 4.4822 1.3046 -1.9401 37 1 4.2821 4.7235 -1.1691 38 1 5.6993 4.8397 -0.0983 39 1 6.2933 5.1243 -2.3942 40 1 6.4671 1.3263 -0.6684 41 1 8.8923 3.1106 2.7247 42 1 11.0362 2.0000 3.0985 43 1 13.2673 -2.2359 1.8851 44 1 10.2098 -0.6692 -0.1847 45 1 8.0651 0.4458 -0.5408 46 1 5.0204 3.3659 2.4604 47 1 3.7776 2.1295 2.7683 48 1 5.3149 1.6731 1.9960 49 1 2.3966 3.8930 -0.2273 50 1 2.2365 3.7336 1.5381 51 1 3.4676 4.8202 0.8505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275565700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:40 Heat of formation + Delta-G solvation = -94.531831 kcal Electronic energy + Delta-G solvation = -31870.235642 eV Core-core repulsion = 27734.996903 eV Total energy + Delta-G solvation = -4135.238739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.19887 -38.68377 -37.50122 -36.74619 -35.95567 -34.04876 -33.12493 -31.28878 -30.62236 -30.13411 -29.68563 -28.10268 -26.81660 -25.43557 -23.19884 -22.61302 -22.43983 -21.48039 -21.25418 -19.83176 -18.33071 -18.14491 -17.43774 -17.01086 -16.75229 -15.80554 -15.63533 -15.40397 -14.84275 -14.60800 -14.42914 -14.23847 -13.94696 -13.79824 -13.44568 -13.37613 -13.03465 -12.94666 -12.67840 -12.49477 -12.44630 -12.34424 -12.16249 -12.06849 -11.93508 -11.74168 -11.37210 -11.27594 -11.14488 -11.06378 -10.86793 -10.81548 -10.55665 -10.36013 -10.32695 -10.26335 -9.82689 -9.49343 -9.38261 -9.16868 -8.86053 -8.44153 -7.93804 -7.82837 -7.68121 -4.76304 2.14220 2.76696 3.04585 3.16050 3.40983 3.50736 3.62892 3.74497 3.82167 4.07753 4.33317 4.39769 4.54988 4.79031 4.86207 4.87707 5.03652 5.17395 5.22783 5.31229 5.34744 5.40525 5.46095 5.49637 5.59494 5.68055 5.70911 5.78942 5.81611 5.85341 5.88825 5.90704 6.00588 6.05679 6.10375 6.14650 6.24922 6.47708 6.52181 6.71919 6.79429 6.88286 7.01622 7.16760 7.17785 7.22936 7.44715 7.54094 7.68488 7.69928 7.82159 8.17003 8.20138 8.37447 8.54935 9.06732 9.55477 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.002845 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.348619 B = 9839.103021 C =10254.390306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.369 6.369 4 C 0.070 3.930 5 H 0.088 0.912 6 C -0.148 4.148 7 C 0.172 3.828 8 C 0.080 3.920 9 O -0.565 6.565 10 N -0.715 5.715 11 C 0.579 3.421 12 O -0.564 6.564 13 C -0.296 4.296 14 C -0.012 4.012 15 C -0.238 4.238 16 C 0.109 3.891 17 C -0.496 4.496 18 H 0.085 0.915 19 C 0.053 3.947 20 N -0.770 5.770 21 Si 1.065 2.935 22 H -0.270 1.270 23 H -0.261 1.261 24 H -0.283 1.283 25 C -0.260 4.260 26 C -0.030 4.030 27 C -0.070 4.070 28 C -0.133 4.133 29 C -0.117 4.117 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.374 0.626 40 H 0.397 0.603 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.295 0.705 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.037 0.963 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.317 4.640 -5.306 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.288 6.288 4 C 0.012 3.988 5 H 0.106 0.894 6 C -0.186 4.186 7 C 0.084 3.916 8 C 0.001 3.999 9 O -0.370 6.370 10 N -0.367 5.367 11 C 0.374 3.626 12 O -0.446 6.446 13 C -0.300 4.300 14 C -0.031 4.031 15 C -0.257 4.257 16 C 0.106 3.894 17 C -0.521 4.521 18 H 0.103 0.897 19 C -0.174 4.174 20 N -0.388 5.388 21 Si 0.889 3.111 22 H -0.196 1.196 23 H -0.185 1.185 24 H -0.209 1.209 25 C -0.279 4.279 26 C -0.049 4.049 27 C -0.071 4.071 28 C -0.190 4.190 29 C -0.174 4.174 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.220 0.780 40 H 0.233 0.767 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.156 4.341 -6.152 19.655 hybrid contribution -0.012 0.054 1.321 1.322 sum -18.168 4.395 -4.831 19.306 Atomic orbital electron populations 1.21733 0.93950 1.02066 1.02966 1.22498 0.95407 0.84357 0.99998 1.87923 1.20576 1.25803 1.94534 1.23843 0.80822 0.98065 0.96026 0.89432 1.23728 0.97677 1.00105 0.97085 1.20856 0.84352 0.91110 0.95296 1.22407 0.92916 0.96321 0.88251 1.86493 1.69887 1.33622 1.46977 1.45484 1.21222 1.32555 1.37424 1.18300 0.83492 0.82663 0.78121 1.90570 1.75227 1.31020 1.47799 1.18820 0.97577 1.06388 1.07239 1.20370 0.92454 0.96292 0.93965 1.20621 0.98592 1.00900 1.05558 1.17755 0.92526 0.88999 0.90149 1.20880 1.04574 1.24892 1.01754 0.89742 1.27573 0.90781 0.91197 1.07852 1.70486 1.28324 1.14837 1.25155 0.83754 0.76779 0.78652 0.71964 1.19580 1.18496 1.20946 1.20706 0.96910 1.05377 1.04913 1.20403 0.95406 0.93566 0.95480 1.22396 0.94179 0.94893 0.95677 1.22053 0.99143 1.03860 0.93920 1.21417 0.97512 0.96257 1.02239 0.91976 0.91317 0.91932 0.93531 0.93463 0.88206 0.90702 0.93161 0.91980 0.78008 0.76717 0.87911 0.88363 0.89303 0.87802 0.89045 0.89230 0.94367 0.92599 0.92233 0.92080 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.15 0.38 -0.77 16 2 C 0.05 0.51 6.50 37.15 0.24 0.75 16 3 O -0.37 -4.33 9.44 -35.23 -0.33 -4.66 16 4 C 0.07 0.86 3.64 -25.92 -0.09 0.76 16 5 H 0.09 1.09 7.83 -51.93 -0.41 0.68 16 6 C -0.15 -1.74 6.85 -25.92 -0.18 -1.92 16 7 C 0.17 2.38 0.70 -131.01 -0.09 2.29 16 8 C 0.08 1.08 5.22 37.16 0.19 1.27 16 9 O -0.57 -7.70 13.54 -35.23 -0.48 -8.18 16 10 N -0.71 -11.48 4.56 -47.85 -0.22 -11.70 16 11 C 0.58 11.27 5.66 -12.42 -0.07 11.20 16 12 O -0.56 -11.70 11.40 5.29 0.06 -11.64 16 13 C -0.30 -6.38 5.89 -104.73 -0.62 -6.99 16 14 C -0.01 -0.26 9.52 -39.61 -0.38 -0.64 16 15 C -0.24 -5.59 9.73 -39.27 -0.38 -5.97 16 16 C 0.11 2.69 5.25 -106.80 -0.56 2.13 16 17 C -0.50 -12.49 9.29 -37.75 -0.35 -12.84 16 18 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 19 C 0.05 1.28 5.14 -17.31 -0.09 1.19 16 20 N -0.77 -18.81 13.64 55.56 0.76 -18.05 16 21 Si 1.07 22.39 25.69 -169.99 -4.37 18.02 16 22 H -0.27 -5.38 6.46 56.52 0.37 -5.02 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.26 -6.02 7.64 -39.27 -0.30 -6.32 16 26 C -0.03 -0.62 9.47 -39.61 -0.38 -1.00 16 27 C -0.07 -0.93 1.25 -153.70 -0.19 -1.12 16 28 C -0.13 -2.05 7.31 37.15 0.27 -1.78 16 29 C -0.12 -1.36 7.18 37.16 0.27 -1.10 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 1.10 7.57 -51.93 -0.39 0.71 16 36 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.05 0.56 6.87 -51.93 -0.36 0.20 16 38 H 0.06 0.97 6.99 -51.93 -0.36 0.60 16 39 H 0.37 3.45 9.12 45.56 0.42 3.86 16 40 H 0.40 5.95 6.66 -40.82 -0.27 5.68 16 41 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 42 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 43 H 0.30 6.98 8.72 -40.82 -0.36 6.62 16 44 H 0.10 2.35 4.68 -52.49 -0.25 2.11 16 45 H 0.09 1.62 6.38 -52.49 -0.33 1.29 16 46 H 0.09 1.56 6.09 -51.93 -0.32 1.25 16 47 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.96 5.95 -51.93 -0.31 0.65 16 49 H 0.06 0.64 7.07 -51.93 -0.37 0.28 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.66 7.31 -51.93 -0.38 0.28 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -28.02 395.56 -8.08 -36.10 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -7.14 Total: 15.01 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -2.32 Total: -20.85 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.54 Total: -29.75 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.75 Total: -24.49 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.37 Total: 18.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.02 -8.08 -36.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275565700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.428 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds