Wall clock time and date at job start Wed Apr 1 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47058 * 2 1 4 4 C 1.42899 * 113.99678 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.85344 * 341.19437 * 4 3 2 6 6 C 1.53782 * 113.61428 * 112.50664 * 4 3 2 7 7 C 1.53778 * 87.08261 * 139.97917 * 6 4 3 8 8 C 1.52999 * 113.69045 * 220.00603 * 7 6 4 9 9 O 1.42899 * 109.47512 * 284.00371 * 8 7 6 10 10 N 1.46507 * 113.61651 * 89.11581 * 7 6 4 11 11 C 1.34779 * 119.99954 * 195.18005 * 10 7 6 12 12 O 1.21584 * 119.99749 * 4.13765 * 11 10 7 13 13 C 1.47638 * 119.99673 * 184.13069 * 11 10 7 14 14 C 1.40014 * 119.89310 * 180.02562 * 13 11 10 15 15 C 1.36315 * 120.10459 * 179.97438 * 14 13 11 16 16 C 1.40888 * 119.89544 * 0.02562 * 15 14 13 17 17 C 1.41108 * 120.10488 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99718 * 19.72678 * 17 16 15 19 19 C 1.40224 * 120.00166 * 199.72120 * 17 16 15 20 20 N 1.30647 * 119.99979 * 216.06378 * 19 17 16 21 21 Si 1.86799 * 119.99783 * 36.05822 * 19 17 16 22 22 H 1.48496 * 109.47480 * 266.04722 * 21 19 17 23 23 H 1.48501 * 109.47161 * 26.05060 * 21 19 17 24 24 H 1.48508 * 109.46963 * 146.04737 * 21 19 17 25 25 C 1.40888 * 119.78999 * 0.24860 * 16 15 14 26 26 C 1.36316 * 119.89312 * 359.48950 * 25 16 15 27 27 C 1.53779 * 87.08304 * 334.56874 * 7 6 4 28 28 C 1.52993 * 113.61745 * 139.98593 * 27 7 6 29 29 C 1.53001 * 113.60901 * 270.88605 * 27 7 6 30 30 H 1.09008 * 109.47174 * 59.99766 * 1 2 3 31 31 H 1.08999 * 109.47615 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47057 * 300.00104 * 1 2 3 33 33 H 1.09007 * 109.47141 * 240.00366 * 2 1 3 34 34 H 1.09000 * 109.47499 * 120.00208 * 2 1 3 35 35 H 1.09000 * 113.61327 * 25.42694 * 6 4 3 36 36 H 1.08999 * 113.61357 * 254.52496 * 6 4 3 37 37 H 1.09003 * 109.47519 * 44.00444 * 8 7 6 38 38 H 1.09004 * 109.47523 * 164.00379 * 8 7 6 39 39 H 0.96699 * 114.00329 * 180.02562 * 9 8 7 40 40 H 0.97000 * 119.99431 * 15.18121 * 10 7 6 41 41 H 1.07997 * 119.94602 * 0.02562 * 14 13 11 42 42 H 1.08009 * 120.05253 * 179.97438 * 15 14 13 43 43 H 0.96994 * 120.00195 * 5.08967 * 20 19 17 44 44 H 1.08000 * 120.04963 * 179.73026 * 25 16 15 45 45 H 1.08002 * 119.94863 * 180.25615 * 26 25 16 46 46 H 1.08992 * 109.47367 * 75.02846 * 28 27 7 47 47 H 1.08997 * 109.47160 * 195.03462 * 28 27 7 48 48 H 1.09001 * 109.47047 * 315.02496 * 28 27 7 49 49 H 1.08996 * 109.47354 * 60.00224 * 29 27 7 50 50 H 1.09006 * 109.47042 * 179.97438 * 29 27 7 51 51 H 1.09000 * 109.47553 * 299.99188 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9277 0.5457 0.3247 6 6 4.0029 2.0462 -1.3010 7 6 4.9899 2.8313 -0.4212 8 6 5.2330 4.2645 -0.8983 9 8 6.0953 4.2475 -2.0377 10 7 6.2321 2.1063 -0.1419 11 6 7.0481 2.5233 0.8464 12 8 6.7180 3.4545 1.5550 13 6 8.3425 1.8490 1.0687 14 6 9.1883 2.2836 2.0964 15 6 10.3842 1.6638 2.3058 16 6 10.7690 0.5847 1.4857 17 6 12.0062 -0.0597 1.6982 18 1 12.5102 0.0389 2.6483 19 6 12.5812 -0.8281 0.6759 20 7 13.2390 -1.9181 0.9691 21 14 12.4066 -0.2932 -1.1054 22 1 11.2318 -0.9690 -1.7123 23 1 12.2160 1.1784 -1.1639 24 1 13.6333 -0.6637 -1.8560 25 6 9.9171 0.1548 0.4492 26 6 8.7207 0.7773 0.2509 27 6 3.9483 2.7252 0.7052 28 6 4.5592 2.4540 2.0814 29 6 2.9399 3.8758 0.7175 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.2993 2.6801 -1.8406 36 1 4.4822 1.3046 -1.9401 37 1 4.2821 4.7235 -1.1691 38 1 5.6993 4.8397 -0.0983 39 1 6.2933 5.1243 -2.3942 40 1 6.4671 1.3263 -0.6684 41 1 8.8923 3.1106 2.7247 42 1 11.0362 2.0000 3.0985 43 1 13.2673 -2.2359 1.8851 44 1 10.2098 -0.6692 -0.1847 45 1 8.0651 0.4458 -0.5408 46 1 5.0204 3.3659 2.4604 47 1 3.7776 2.1295 2.7683 48 1 5.3149 1.6731 1.9960 49 1 2.3966 3.8930 -0.2273 50 1 2.2365 3.7336 1.5381 51 1 3.4676 4.8202 0.8505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275565700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:39 Heat of formation + Delta-G solvation = -112.839491 kcal Electronic energy + Delta-G solvation = -31871.029521 eV Core-core repulsion = 27734.996903 eV Total energy + Delta-G solvation = -4136.032619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.33312 -40.18950 -38.91157 -37.95928 -36.94305 -35.85853 -34.49654 -32.28787 -32.00247 -31.68975 -31.09876 -29.11710 -28.05259 -27.04323 -24.12313 -23.81579 -23.47371 -23.00076 -22.79900 -21.39227 -20.16222 -19.36969 -18.70004 -18.12838 -17.77299 -16.92580 -16.66026 -16.57652 -16.28025 -16.15321 -15.80349 -15.69609 -15.61117 -15.06827 -14.46624 -14.41139 -14.34992 -14.25277 -14.08515 -13.98719 -13.73761 -13.35160 -13.26784 -13.13367 -12.98321 -12.89023 -12.86840 -12.66458 -12.53833 -12.24350 -12.14914 -11.97973 -11.92427 -11.89680 -11.58895 -11.33113 -11.25012 -10.96060 -10.91140 -10.40790 -10.24861 -9.80389 -9.70827 -9.64436 -9.53645 -6.66131 0.39055 0.94641 1.36365 1.48238 1.76964 2.05255 2.13791 2.31167 2.62469 2.71029 3.10075 3.34608 3.50522 3.60474 3.80653 3.92822 4.17989 4.19100 4.20054 4.25398 4.30931 4.33671 4.36329 4.47638 4.51515 4.53425 4.58925 4.71674 4.74484 4.82379 4.83197 4.86895 4.93433 4.96703 5.00765 5.04901 5.06271 5.11511 5.13344 5.29357 5.29842 5.40098 5.45448 5.49639 5.63792 5.71024 5.78599 5.86392 6.00485 6.30196 6.32253 6.52321 6.68550 6.78839 6.88278 7.55256 7.68831 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.002845 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.348619 B = 9839.103021 C =10254.390306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.378 6.378 4 C 0.076 3.924 5 H 0.084 0.916 6 C -0.134 4.134 7 C 0.158 3.842 8 C 0.084 3.916 9 O -0.581 6.581 10 N -0.702 5.702 11 C 0.580 3.420 12 O -0.578 6.578 13 C -0.294 4.294 14 C -0.019 4.019 15 C -0.253 4.253 16 C 0.095 3.905 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.030 3.970 20 N -0.787 5.787 21 Si 1.092 2.908 22 H -0.247 1.247 23 H -0.268 1.268 24 H -0.269 1.269 25 C -0.271 4.271 26 C -0.024 4.024 27 C -0.074 4.074 28 C -0.125 4.125 29 C -0.112 4.112 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.392 0.608 40 H 0.404 0.596 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.290 0.710 44 H 0.111 0.889 45 H 0.131 0.869 46 H 0.065 0.935 47 H 0.045 0.955 48 H 0.034 0.966 49 H 0.073 0.927 50 H 0.061 0.939 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.324 4.799 -7.929 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.297 6.297 4 C 0.018 3.982 5 H 0.102 0.898 6 C -0.171 4.171 7 C 0.071 3.929 8 C 0.005 3.995 9 O -0.388 6.388 10 N -0.353 5.353 11 C 0.374 3.626 12 O -0.460 6.460 13 C -0.298 4.298 14 C -0.038 4.038 15 C -0.272 4.272 16 C 0.092 3.908 17 C -0.556 4.556 18 H 0.079 0.921 19 C -0.192 4.192 20 N -0.405 5.405 21 Si 0.910 3.090 22 H -0.172 1.172 23 H -0.193 1.193 24 H -0.195 1.195 25 C -0.290 4.290 26 C -0.043 4.043 27 C -0.075 4.075 28 C -0.182 4.182 29 C -0.169 4.169 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.241 0.759 40 H 0.241 0.759 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.129 0.871 45 H 0.148 0.852 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.179 4.492 -8.783 23.364 hybrid contribution 0.730 0.127 2.223 2.344 sum -20.449 4.619 -6.560 21.966 Atomic orbital electron populations 1.21735 0.92636 1.03193 1.02802 1.22693 0.96507 0.83390 1.00382 1.87908 1.19987 1.27216 1.94557 1.23700 0.81353 0.97220 0.95924 0.89847 1.23683 0.96787 0.99946 0.96722 1.21138 0.83602 0.91679 0.96508 1.22350 0.93915 0.95644 0.87586 1.86436 1.70073 1.35524 1.46781 1.45328 1.21418 1.32487 1.36072 1.18011 0.83283 0.82434 0.78900 1.90589 1.75425 1.31572 1.48459 1.19225 0.98284 1.06037 1.06226 1.20517 0.92361 0.96389 0.94535 1.20743 0.99305 1.01247 1.05946 1.17962 0.92623 0.89239 0.91024 1.20826 1.05768 1.27365 1.01674 0.92131 1.28476 0.89974 0.90633 1.10156 1.70532 1.29615 1.15464 1.24919 0.83433 0.78255 0.78064 0.69213 1.17207 1.19264 1.19482 1.20860 0.97471 1.05914 1.04752 1.20729 0.95067 0.92583 0.95886 1.22457 0.94490 0.96453 0.94116 1.21899 0.98749 1.01873 0.95718 1.21389 0.97071 0.95443 1.03044 0.91798 0.89599 0.92406 0.92602 0.93651 0.86786 0.89653 0.90402 0.94642 0.75909 0.75906 0.87473 0.88404 0.89835 0.87145 0.85164 0.91574 0.93607 0.94648 0.90819 0.92024 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.05 0.75 6.50 71.98 0.47 1.22 16 3 O -0.38 -7.72 9.44 -148.98 -1.41 -9.12 16 4 C 0.08 1.63 3.64 31.12 0.11 1.75 16 5 H 0.08 1.86 7.83 -2.39 -0.02 1.84 16 6 C -0.13 -2.63 6.85 31.12 0.21 -2.42 16 7 C 0.16 3.95 0.70 4.13 0.00 3.95 16 8 C 0.08 2.04 5.22 71.98 0.38 2.41 16 9 O -0.58 -14.09 13.54 -148.98 -2.02 -16.11 16 10 N -0.70 -20.81 4.56 -423.55 -1.93 -22.75 16 11 C 0.58 21.79 5.66 86.72 0.49 22.28 16 12 O -0.58 -23.63 11.40 -3.98 -0.05 -23.67 16 13 C -0.29 -12.31 5.89 -19.93 -0.12 -12.43 16 14 C -0.02 -0.85 9.52 22.25 0.21 -0.64 16 15 C -0.25 -12.21 9.73 22.47 0.22 -11.99 16 16 C 0.09 4.75 5.25 -21.28 -0.11 4.63 16 17 C -0.53 -27.79 9.29 23.46 0.22 -27.57 16 18 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 19 C 0.03 1.50 5.14 85.35 0.44 1.94 16 20 N -0.79 -39.25 13.64 21.87 0.30 -38.96 16 21 Si 1.09 44.31 25.69 68.60 1.76 46.07 16 22 H -0.25 -9.10 6.46 99.48 0.64 -8.46 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 25 C -0.27 -12.29 7.64 22.47 0.17 -12.12 16 26 C -0.02 -0.96 9.47 22.25 0.21 -0.75 16 27 C -0.07 -1.80 1.25 -51.66 -0.06 -1.87 16 28 C -0.13 -3.77 7.31 71.98 0.53 -3.24 16 29 C -0.11 -2.33 7.18 71.98 0.52 -1.81 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 1.98 7.57 -2.39 -0.02 1.96 16 36 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 37 H 0.08 1.46 6.87 -2.39 -0.02 1.44 16 38 H 0.04 1.05 6.99 -2.38 -0.02 1.04 16 39 H 0.39 6.14 9.12 -74.06 -0.68 5.47 16 40 H 0.40 10.75 6.66 -92.71 -0.62 10.13 16 41 H 0.11 4.68 7.63 -2.91 -0.02 4.65 16 42 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 43 H 0.29 14.29 8.72 -92.71 -0.81 13.48 16 44 H 0.11 4.82 4.68 -2.91 -0.01 4.81 16 45 H 0.13 4.13 6.38 -2.91 -0.02 4.11 16 46 H 0.07 2.30 6.09 -2.39 -0.01 2.29 16 47 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.03 1.18 5.95 -2.39 -0.01 1.16 16 49 H 0.07 1.32 7.07 -2.39 -0.02 1.31 16 50 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 51 H 0.06 1.19 7.31 -2.39 -0.02 1.17 16 Total: -1.00 -61.01 395.56 0.85 -60.16 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -0.43 Total: 42.14 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 4.62 Total: -37.77 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -1.63 Total: -61.70 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -3.47 Total: -48.91 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.76 Total: 46.07 kcal Total: -61.01 0.85 -60.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275565700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.677 kcal (2) G-P(sol) polarization free energy of solvation -61.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds