Wall clock time and date at job start Wed Apr 1 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47309 * 2 1 4 4 C 1.42908 * 113.99650 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.84785 * 18.80427 * 4 3 2 6 6 C 1.53783 * 113.61076 * 247.49394 * 4 3 2 7 7 C 1.53780 * 87.08166 * 270.88903 * 6 4 3 8 8 C 1.52996 * 113.69081 * 89.13151 * 7 6 4 9 9 O 1.42894 * 109.47058 * 75.68664 * 8 7 6 10 10 N 1.46508 * 113.61189 * 220.02321 * 7 6 4 11 11 C 1.34774 * 119.99753 * 163.55840 * 10 7 6 12 12 O 1.21581 * 120.00271 * 4.81863 * 11 10 7 13 13 C 1.47646 * 119.99435 * 184.82278 * 11 10 7 14 14 C 1.40011 * 119.89555 * 0.24539 * 13 11 10 15 15 C 1.36324 * 120.10100 * 180.25850 * 14 13 11 16 16 C 1.40889 * 119.89069 * 359.49533 * 15 14 13 17 17 C 1.41117 * 120.09959 * 180.23415 * 16 15 14 18 18 H 1.08000 * 119.99851 * 145.55555 * 17 16 15 19 19 C 1.40225 * 119.99658 * 325.55731 * 17 16 15 20 20 N 1.30645 * 120.00402 * 3.52971 * 19 17 16 21 21 Si 1.86803 * 119.99379 * 183.52968 * 19 17 16 22 22 H 1.48499 * 109.47439 * 60.00271 * 21 19 17 23 23 H 1.48501 * 109.46839 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47472 * 299.99758 * 21 19 17 25 25 C 1.40883 * 119.79501 * 0.25857 * 16 15 14 26 26 C 1.36319 * 119.89164 * 359.97438 * 25 16 15 27 27 C 1.53779 * 113.61104 * 149.99999 * 4 3 2 28 28 C 1.53007 * 113.61616 * 334.56685 * 27 4 3 29 29 C 1.52998 * 113.69217 * 203.67477 * 27 4 3 30 30 H 1.08998 * 109.47525 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47068 * 300.00256 * 1 2 3 32 32 H 1.09002 * 109.46885 * 59.99368 * 1 2 3 33 33 H 1.09002 * 109.47068 * 239.99744 * 2 1 3 34 34 H 1.09007 * 109.47123 * 120.00211 * 2 1 3 35 35 H 1.09003 * 113.60770 * 156.33631 * 6 4 3 36 36 H 1.09003 * 113.61520 * 25.43874 * 6 4 3 37 37 H 1.09004 * 109.47055 * 195.68236 * 8 7 6 38 38 H 1.08998 * 109.47021 * 315.68630 * 8 7 6 39 39 H 0.96706 * 114.00325 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99590 * 343.55376 * 10 7 6 41 41 H 1.07993 * 119.94990 * 0.02562 * 14 13 11 42 42 H 1.07995 * 120.04970 * 179.77820 * 15 14 13 43 43 H 0.97000 * 119.99708 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.05203 * 180.02562 * 25 16 15 45 45 H 1.07998 * 119.94098 * 180.02562 * 26 25 16 46 46 H 1.08997 * 109.46581 * 157.49360 * 28 27 4 47 47 H 1.08989 * 109.47043 * 277.49814 * 28 27 4 48 48 H 1.09002 * 109.46500 * 37.49957 * 28 27 4 49 49 H 1.09005 * 109.46590 * 322.46803 * 29 27 4 50 50 H 1.08993 * 109.47247 * 82.46313 * 29 27 4 51 51 H 1.08997 * 109.47346 * 202.46805 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.9278 0.5455 -0.3247 6 6 4.0030 2.0460 1.3010 7 6 3.8397 3.4325 0.6560 8 6 2.4721 4.0704 0.9078 9 8 2.4151 4.5614 2.2486 10 7 4.9525 4.3439 0.9343 11 6 5.1187 5.4525 0.1862 12 8 4.2969 5.7427 -0.6616 13 6 6.2988 6.3146 0.3962 14 6 7.2464 5.9756 1.3695 15 6 8.3348 6.7714 1.5706 16 6 8.5107 7.9308 0.7897 17 6 9.6383 8.7551 0.9907 18 1 10.0935 9.2614 0.1523 19 6 10.1679 8.9168 2.2790 20 7 9.6607 8.2509 3.2821 21 14 11.5986 10.0843 2.5609 22 1 11.2024 11.4584 2.1608 23 1 11.9695 10.0744 3.9988 24 1 12.7616 9.6477 1.7472 25 6 7.5571 8.2650 -0.1920 26 6 6.4694 7.4656 -0.3825 27 6 3.9485 2.7251 -0.7051 28 6 2.9870 3.2757 -1.7604 29 6 5.3846 2.5996 -1.2177 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.0412 1.7695 1.4850 36 1 3.3622 1.8899 2.1689 37 1 2.3226 4.8959 0.2119 38 1 1.6907 3.3248 0.7604 39 1 1.5744 4.9802 2.4787 40 1 5.5696 4.1494 1.6570 41 1 7.1129 5.0843 1.9645 42 1 9.0634 6.5110 2.3240 43 1 10.0273 8.3625 4.1732 44 1 7.6880 9.1526 -0.7932 45 1 5.7381 7.7208 -1.1351 46 1 3.1955 4.3328 -1.9255 47 1 3.1203 2.7290 -2.6938 48 1 1.9605 3.1576 -1.4134 49 1 5.9759 2.0251 -0.5045 50 1 5.3832 2.0908 -2.1816 51 1 5.8178 3.5932 -1.3319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275565708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:44 Heat of formation + Delta-G solvation = -95.202249 kcal Electronic energy + Delta-G solvation = -31811.068798 eV Core-core repulsion = 27675.800988 eV Total energy + Delta-G solvation = -4135.267810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.11189 -38.62734 -37.30443 -36.52783 -35.89347 -33.73247 -32.96424 -31.31682 -30.45710 -29.80029 -29.38896 -28.27466 -26.29752 -25.55284 -23.41049 -22.87444 -22.30073 -21.55881 -20.84353 -19.52733 -18.13722 -17.46577 -17.30730 -17.11037 -16.33182 -15.80678 -15.46124 -15.36340 -14.96302 -14.81918 -14.30826 -13.95450 -13.73503 -13.44125 -13.41174 -13.14678 -13.05686 -12.89199 -12.67158 -12.40976 -12.26612 -12.10887 -12.03897 -11.84873 -11.78320 -11.68633 -11.45232 -11.36839 -11.26835 -11.18453 -10.93652 -10.63373 -10.54644 -10.39130 -10.28065 -9.97347 -9.68503 -9.50370 -9.47203 -9.36095 -8.73928 -8.38442 -7.67467 -7.36251 -6.82212 -4.58012 2.27356 2.98868 2.99801 3.02725 3.05704 3.32534 3.81878 3.83411 3.97296 4.16595 4.40713 4.54151 4.64946 4.82185 4.83283 4.95644 5.06847 5.11468 5.19757 5.34033 5.42814 5.51418 5.57348 5.61146 5.64132 5.73967 5.82159 5.86041 5.87756 5.96826 6.04265 6.07514 6.09654 6.18996 6.21366 6.31689 6.34940 6.47208 6.70072 6.81134 6.92975 7.04011 7.09087 7.17842 7.21819 7.51879 7.68884 7.84221 7.86391 7.93322 8.15185 8.35041 8.48952 8.72066 8.80970 9.18791 10.06605 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.024569 B = 0.002362 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.389488 B =11851.872605 C =12025.045394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.360 6.360 4 C 0.070 3.930 5 H 0.077 0.923 6 C -0.156 4.156 7 C 0.179 3.821 8 C 0.082 3.918 9 O -0.569 6.569 10 N -0.719 5.719 11 C 0.577 3.423 12 O -0.569 6.569 13 C -0.268 4.268 14 C -0.069 4.069 15 C -0.166 4.166 16 C 0.125 3.875 17 C -0.451 4.451 18 H 0.081 0.919 19 C 0.070 3.930 20 N -0.794 5.794 21 Si 0.919 3.081 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.263 1.263 25 C -0.229 4.229 26 C -0.032 4.032 27 C -0.072 4.072 28 C -0.140 4.140 29 C -0.121 4.121 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.373 0.627 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.283 0.717 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.044 0.956 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.056 0.944 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.421 -15.164 -2.439 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.279 6.279 4 C 0.012 3.988 5 H 0.095 0.905 6 C -0.194 4.194 7 C 0.092 3.908 8 C 0.004 3.996 9 O -0.373 6.373 10 N -0.370 5.370 11 C 0.372 3.628 12 O -0.451 6.451 13 C -0.272 4.272 14 C -0.088 4.088 15 C -0.186 4.186 16 C 0.122 3.878 17 C -0.481 4.481 18 H 0.099 0.901 19 C -0.148 4.148 20 N -0.419 5.419 21 Si 0.744 3.256 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.248 4.248 26 C -0.051 4.051 27 C -0.074 4.074 28 C -0.197 4.197 29 C -0.179 4.179 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.219 0.781 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.148 0.852 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.101 0.899 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.470 -15.088 -2.765 19.153 hybrid contribution 0.507 0.411 0.757 0.999 sum -10.963 -14.677 -2.008 18.429 Atomic orbital electron populations 1.21741 0.93827 1.02119 1.03150 1.22521 0.95459 0.84134 0.99967 1.87874 1.19705 1.25868 1.94437 1.23065 0.81449 0.97933 0.96403 0.90460 1.23742 1.02048 0.95339 0.98310 1.21413 0.87008 0.87514 0.94901 1.22341 0.95554 0.98154 0.83596 1.86447 1.40696 1.79957 1.30190 1.45716 1.29888 1.24677 1.36719 1.18464 0.85420 0.79346 0.79594 1.90552 1.45661 1.72704 1.36169 1.19055 0.99127 1.01677 1.07337 1.20574 0.94716 0.97850 0.95691 1.21255 0.99008 0.94855 1.03436 1.17838 0.90956 0.89851 0.89135 1.19708 1.10335 1.24085 0.93937 0.90133 1.26030 0.97094 0.95876 0.95818 1.69670 1.36792 1.34257 1.01186 0.86177 0.80649 0.80806 0.78011 1.18833 1.20201 1.18792 1.20849 0.96811 1.01397 1.05778 1.20372 0.96091 0.92609 0.96012 1.22341 0.96711 0.93403 0.94928 1.21734 0.98564 1.02840 0.96555 1.21492 0.93204 1.03098 1.00078 0.91251 0.91883 0.91826 0.93409 0.93459 0.88704 0.89938 0.91828 0.91642 0.78136 0.76760 0.89313 0.85236 0.90575 0.88399 0.88110 0.89932 0.93665 0.92003 0.92639 0.92529 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.67 16 2 C 0.06 0.46 6.50 37.16 0.24 0.70 16 3 O -0.36 -3.99 6.75 -35.23 -0.24 -4.23 16 4 C 0.07 0.79 3.79 -25.92 -0.10 0.69 16 5 H 0.08 0.74 7.83 -51.93 -0.41 0.34 16 6 C -0.16 -1.89 6.88 -25.92 -0.18 -2.06 16 7 C 0.18 2.65 0.67 -131.00 -0.09 2.56 16 8 C 0.08 1.24 4.90 37.16 0.18 1.42 16 9 O -0.57 -8.65 13.54 -35.23 -0.48 -9.13 16 10 N -0.72 -12.30 4.36 -47.84 -0.21 -12.51 16 11 C 0.58 11.92 5.96 -12.42 -0.07 11.85 16 12 O -0.57 -12.58 12.46 5.29 0.07 -12.51 16 13 C -0.27 -6.07 5.89 -104.73 -0.62 -6.68 16 14 C -0.07 -1.55 9.47 -39.61 -0.37 -1.92 16 15 C -0.17 -4.12 8.61 -39.27 -0.34 -4.46 16 16 C 0.13 3.23 5.55 -106.80 -0.59 2.63 16 17 C -0.45 -11.46 9.04 -37.74 -0.34 -11.80 16 18 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 19 C 0.07 1.68 5.42 -17.31 -0.09 1.58 16 20 N -0.79 -19.61 10.60 55.56 0.59 -19.02 16 21 Si 0.92 17.99 29.56 -169.99 -5.03 12.96 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 25 C -0.23 -5.57 9.73 -39.27 -0.38 -5.95 16 26 C -0.03 -0.74 9.52 -39.61 -0.38 -1.12 16 27 C -0.07 -0.98 0.89 -153.69 -0.14 -1.11 16 28 C -0.14 -1.98 7.86 37.16 0.29 -1.69 16 29 C -0.12 -1.63 8.46 37.16 0.31 -1.32 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 1.03 7.66 -51.93 -0.40 0.64 16 36 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.06 1.11 6.36 -51.93 -0.33 0.78 16 38 H 0.07 0.91 5.59 -51.93 -0.29 0.62 16 39 H 0.37 4.04 9.12 45.56 0.42 4.46 16 40 H 0.40 6.45 6.72 -40.82 -0.27 6.18 16 41 H 0.09 1.72 6.38 -52.49 -0.34 1.38 16 42 H 0.13 3.30 6.13 -52.49 -0.32 2.98 16 43 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 44 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 45 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 46 H 0.08 1.41 5.97 -51.93 -0.31 1.10 16 47 H 0.04 0.57 8.14 -51.94 -0.42 0.15 16 48 H 0.06 0.84 6.01 -51.93 -0.31 0.53 16 49 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.07 1.20 6.53 -51.93 -0.34 0.86 16 LS Contribution 396.58 15.07 5.98 5.98 Total: -1.00 -29.21 396.58 -8.63 -37.84 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -7.03 Total: 17.97 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.28 Total: -17.35 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.38 Total: -31.53 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.65 Total: -25.87 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.21 -8.63 -37.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275565708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.364 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds