Wall clock time and date at job start Wed Apr 1 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47460 * 2 1 4 4 C 1.42897 * 113.99994 * 179.97438 * 3 2 1 5 5 H 1.08992 * 112.90954 * 341.25076 * 4 3 2 6 6 C 1.54051 * 113.61879 * 112.50753 * 4 3 2 7 7 C 1.53781 * 86.98667 * 139.97373 * 6 4 3 8 8 C 1.53004 * 113.61407 * 89.16299 * 7 6 4 9 9 O 1.42900 * 109.47302 * 72.57973 * 8 7 6 10 10 N 1.46502 * 113.61610 * 219.97897 * 7 6 4 11 11 C 1.34778 * 119.99940 * 169.49069 * 10 7 6 12 12 O 1.21587 * 119.99724 * 5.25013 * 11 10 7 13 13 C 1.47642 * 119.99957 * 185.25218 * 11 10 7 14 14 C 1.40009 * 119.89360 * 359.72536 * 13 11 10 15 15 C 1.36316 * 120.10558 * 179.72113 * 14 13 11 16 16 C 1.40890 * 119.88916 * 0.54955 * 15 14 13 17 17 C 1.41108 * 120.10372 * 179.74181 * 16 15 14 18 18 H 1.07999 * 120.00331 * 209.56617 * 17 16 15 19 19 C 1.40224 * 119.99848 * 29.56927 * 17 16 15 20 20 N 1.30645 * 120.00233 * 11.45112 * 19 17 16 21 21 Si 1.86802 * 120.00012 * 191.45090 * 19 17 16 22 22 H 1.48491 * 109.47298 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47070 * 119.99937 * 21 19 17 24 24 H 1.48504 * 109.47003 * 239.99697 * 21 19 17 25 25 C 1.40887 * 119.79685 * 359.72451 * 16 15 14 26 26 C 1.36317 * 119.88729 * 359.97438 * 25 16 15 27 27 C 1.53778 * 87.17596 * 334.57016 * 7 6 4 28 28 C 1.53000 * 113.61792 * 140.01710 * 27 7 6 29 29 C 1.52993 * 113.61508 * 270.92643 * 27 7 6 30 30 H 1.08997 * 109.47496 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47510 * 300.00488 * 1 2 3 32 32 H 1.09006 * 109.46837 * 59.99654 * 1 2 3 33 33 H 1.08995 * 109.47202 * 240.00114 * 2 1 3 34 34 H 1.08998 * 109.47028 * 120.00087 * 2 1 3 35 35 H 1.09000 * 113.61076 * 25.47228 * 6 4 3 36 36 H 1.08993 * 113.69571 * 254.49491 * 6 4 3 37 37 H 1.08998 * 109.47357 * 192.58805 * 8 7 6 38 38 H 1.09006 * 109.46848 * 312.58612 * 8 7 6 39 39 H 0.96693 * 113.99785 * 180.02562 * 9 8 7 40 40 H 0.96994 * 119.99810 * 349.49171 * 10 7 6 41 41 H 1.08005 * 119.95014 * 359.97438 * 14 13 11 42 42 H 1.08001 * 120.05639 * 180.27908 * 15 14 13 43 43 H 0.97004 * 120.00367 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.05830 * 180.02562 * 25 16 15 45 45 H 1.08000 * 119.94732 * 179.97438 * 26 25 16 46 46 H 1.09001 * 109.46863 * 60.00152 * 28 27 7 47 47 H 1.08998 * 109.46994 * 180.02562 * 28 27 7 48 48 H 1.08998 * 109.47107 * 300.00688 * 28 27 7 49 49 H 1.09001 * 109.47360 * 59.99694 * 29 27 7 50 50 H 1.09000 * 109.47537 * 179.97438 * 29 27 7 51 51 H 1.09004 * 109.47390 * 299.99689 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9287 0.5458 0.3236 6 6 4.0041 2.0472 -1.3032 7 6 4.9900 2.8313 -0.4211 8 6 6.2872 2.0742 -0.1295 9 8 7.0929 2.0376 -1.3092 10 7 5.2227 4.2036 -0.8780 11 6 5.8913 5.0711 -0.0925 12 8 6.3838 4.6903 0.9518 13 6 6.0255 6.4838 -0.5003 14 6 5.4623 6.9185 -1.7061 15 6 5.5787 8.2231 -2.0840 16 6 6.2770 9.1318 -1.2645 17 6 6.4049 10.4820 -1.6540 18 1 7.2691 11.0529 -1.3478 19 6 5.4100 11.0827 -2.4386 20 7 4.2680 10.4755 -2.6228 21 14 5.7174 12.7511 -3.2205 22 1 7.0792 13.2224 -2.8621 23 1 5.6075 12.6337 -4.6968 24 1 4.7101 13.7232 -2.7249 25 6 6.8470 8.6883 -0.0548 26 6 6.7200 7.3832 0.3176 27 6 3.9484 2.7253 0.7052 28 6 4.5592 2.4539 2.0814 29 6 2.9399 3.8758 0.7176 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.3008 2.6818 -1.8424 36 1 4.4842 1.3069 -1.9431 37 1 6.8322 2.5804 0.6672 38 1 6.0518 1.0562 0.1813 39 1 7.9327 1.5716 -1.1975 40 1 4.8956 4.4879 -1.7458 41 1 4.9312 6.2201 -2.3360 42 1 5.1400 8.5586 -3.0122 43 1 3.5798 10.8908 -3.1658 44 1 7.3828 9.3814 0.5767 45 1 7.1569 7.0421 1.2446 46 1 5.2398 3.2642 2.3430 47 1 3.7651 2.3914 2.8255 48 1 5.1079 1.5125 2.0562 49 1 2.3967 3.8930 -0.2273 50 1 2.2366 3.7337 1.5380 51 1 3.4677 4.8202 0.8505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275565717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:49 Heat of formation + Delta-G solvation = -99.400023 kcal Electronic energy + Delta-G solvation = -31648.213909 eV Core-core repulsion = 27512.764070 eV Total energy + Delta-G solvation = -4135.449840 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.06816 -38.60755 -37.39949 -36.63444 -35.95435 -33.78487 -32.98911 -31.26561 -30.57782 -29.84873 -29.40896 -28.09352 -26.43714 -25.58745 -23.43180 -22.89885 -22.33860 -21.56394 -20.86635 -19.52725 -18.11468 -17.47004 -17.35036 -17.06579 -16.54795 -15.80484 -15.45947 -15.30318 -14.97392 -14.78572 -14.53647 -13.96299 -13.73269 -13.53646 -13.35042 -13.19212 -12.97477 -12.95413 -12.69825 -12.50356 -12.26157 -12.06270 -12.03186 -11.88608 -11.83811 -11.61261 -11.40481 -11.36148 -11.32535 -11.23546 -10.90778 -10.73625 -10.60311 -10.55112 -10.30469 -10.02553 -9.85910 -9.49999 -9.39082 -9.37731 -8.74264 -8.44321 -7.68030 -7.44717 -6.93609 -4.57104 2.26605 2.94488 2.98483 3.03750 3.05984 3.43788 3.79008 3.87358 3.94467 4.07553 4.34890 4.52544 4.59827 4.69643 4.85335 4.88920 5.04784 5.14015 5.19264 5.31778 5.34446 5.43774 5.49961 5.59822 5.63304 5.68861 5.76219 5.84931 5.89801 5.93280 6.02459 6.04092 6.10582 6.14459 6.20482 6.29845 6.34167 6.54815 6.59183 6.80338 6.89017 7.01771 7.12888 7.15837 7.17203 7.48755 7.68236 7.69337 7.83359 7.90395 8.12253 8.32604 8.45373 8.68391 8.78994 9.15788 9.98927 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002584 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.190577 B =10834.234722 C =11715.721634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.070 3.930 5 H 0.086 0.914 6 C -0.152 4.152 7 C 0.172 3.828 8 C 0.082 3.918 9 O -0.565 6.565 10 N -0.714 5.714 11 C 0.580 3.420 12 O -0.572 6.572 13 C -0.275 4.275 14 C -0.065 4.065 15 C -0.171 4.171 16 C 0.129 3.871 17 C -0.448 4.448 18 H 0.083 0.917 19 C 0.072 3.928 20 N -0.782 5.782 21 Si 0.914 3.086 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.272 1.272 25 C -0.235 4.235 26 C -0.026 4.026 27 C -0.071 4.071 28 C -0.143 4.143 29 C -0.110 4.110 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.375 0.625 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.284 0.716 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.058 0.942 50 H 0.055 0.945 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 -17.742 1.788 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.283 6.283 4 C 0.012 3.988 5 H 0.104 0.896 6 C -0.190 4.190 7 C 0.084 3.916 8 C 0.003 3.997 9 O -0.370 6.370 10 N -0.366 5.366 11 C 0.375 3.625 12 O -0.455 6.455 13 C -0.280 4.280 14 C -0.084 4.084 15 C -0.190 4.190 16 C 0.126 3.874 17 C -0.476 4.476 18 H 0.101 0.899 19 C -0.147 4.147 20 N -0.406 5.406 21 Si 0.738 3.262 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.254 4.254 26 C -0.045 4.045 27 C -0.072 4.072 28 C -0.201 4.201 29 C -0.167 4.167 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.221 0.779 40 H 0.234 0.766 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.664 -17.469 2.167 18.210 hybrid contribution 0.398 0.255 -0.644 0.799 sum -4.266 -17.214 1.523 17.800 Atomic orbital electron populations 1.21737 0.93881 1.02006 1.03216 1.22493 0.95563 0.84406 0.99746 1.87985 1.20241 1.25623 1.94490 1.23789 0.81206 0.97457 0.96363 0.89640 1.23778 0.97815 1.00054 0.97306 1.21190 0.91732 0.83255 0.95374 1.22355 0.91616 0.97319 0.88386 1.86473 1.34199 1.80503 1.35783 1.45601 1.59799 1.09516 1.21670 1.18468 0.75707 0.85779 0.82581 1.90536 1.49790 1.79611 1.25530 1.18957 1.15888 0.92006 1.01111 1.20506 0.97390 0.95912 0.94569 1.20992 1.05242 0.91569 1.01185 1.17804 0.87591 0.93011 0.88966 1.19826 1.05351 0.96119 1.26310 0.89868 1.26052 0.94141 1.00266 0.94262 1.69723 1.03601 1.38279 1.28998 0.86154 0.79934 0.80816 0.79285 1.18213 1.19532 1.19739 1.20769 1.10850 0.95300 0.98530 1.20357 0.94542 0.92738 0.96847 1.22445 0.94831 0.95080 0.94875 1.21862 1.00895 1.02188 0.95108 1.21275 0.97017 0.96514 1.01928 0.91360 0.91846 0.91829 0.93593 0.93612 0.88477 0.90359 0.90407 0.93992 0.77931 0.76587 0.89351 0.86225 0.90471 0.88439 0.88152 0.89776 0.92891 0.93300 0.92265 0.92559 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.15 0.38 -0.78 16 2 C 0.05 0.49 6.50 37.15 0.24 0.73 16 3 O -0.36 -4.35 9.44 -35.23 -0.33 -4.69 16 4 C 0.07 0.82 3.38 -25.77 -0.09 0.73 16 5 H 0.09 0.86 7.14 -51.93 -0.37 0.49 16 6 C -0.15 -1.87 6.86 -25.78 -0.18 -2.04 16 7 C 0.17 2.48 0.66 -131.00 -0.09 2.39 16 8 C 0.08 1.12 4.85 37.16 0.18 1.30 16 9 O -0.57 -7.75 13.58 -35.23 -0.48 -8.23 16 10 N -0.71 -12.15 4.31 -47.84 -0.21 -12.35 16 11 C 0.58 11.90 6.41 -12.42 -0.08 11.82 16 12 O -0.57 -12.45 12.56 5.29 0.07 -12.38 16 13 C -0.28 -6.24 5.89 -104.73 -0.62 -6.85 16 14 C -0.06 -1.45 9.47 -39.61 -0.38 -1.82 16 15 C -0.17 -4.22 8.59 -39.27 -0.34 -4.56 16 16 C 0.13 3.33 5.54 -106.80 -0.59 2.73 16 17 C -0.45 -11.29 9.05 -37.75 -0.34 -11.63 16 18 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 19 C 0.07 1.72 5.23 -17.31 -0.09 1.63 16 20 N -0.78 -19.11 10.92 55.56 0.61 -18.51 16 21 Si 0.91 17.68 29.58 -169.99 -5.03 12.66 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 25 C -0.23 -5.71 9.73 -39.27 -0.38 -6.10 16 26 C -0.03 -0.60 9.52 -39.61 -0.38 -0.98 16 27 C -0.07 -0.97 1.06 -153.70 -0.16 -1.13 16 28 C -0.14 -1.91 8.12 37.16 0.30 -1.61 16 29 C -0.11 -1.66 7.86 37.15 0.29 -1.36 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 1.23 7.66 -51.93 -0.40 0.83 16 36 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.08 1.24 6.02 -51.93 -0.31 0.93 16 38 H 0.04 0.46 6.77 -51.93 -0.35 0.11 16 39 H 0.37 3.44 9.12 45.56 0.42 3.85 16 40 H 0.40 6.47 6.69 -40.82 -0.27 6.20 16 41 H 0.09 1.72 6.38 -52.48 -0.34 1.38 16 42 H 0.12 3.02 6.29 -52.49 -0.33 2.69 16 43 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 44 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 46 H 0.08 1.35 6.37 -51.93 -0.33 1.02 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.55 6.88 -51.93 -0.36 0.20 16 49 H 0.06 0.88 7.18 -51.93 -0.37 0.50 16 50 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.06 1.11 6.88 -51.93 -0.36 0.75 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -29.07 401.05 -8.76 -37.83 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -7.13 Total: 17.17 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.31 Total: -17.54 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.40 Total: -30.86 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.74 Total: -25.30 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.07 -8.76 -37.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275565717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.572 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds