Wall clock time and date at job start Wed Apr 1 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47460 * 2 1 4 4 C 1.42897 * 113.99994 * 179.97438 * 3 2 1 5 5 H 1.08992 * 112.90954 * 341.25076 * 4 3 2 6 6 C 1.54051 * 113.61879 * 112.50753 * 4 3 2 7 7 C 1.53781 * 86.98667 * 139.97373 * 6 4 3 8 8 C 1.53004 * 113.61407 * 89.16299 * 7 6 4 9 9 O 1.42900 * 109.47302 * 72.57973 * 8 7 6 10 10 N 1.46502 * 113.61610 * 219.97897 * 7 6 4 11 11 C 1.34778 * 119.99940 * 169.49069 * 10 7 6 12 12 O 1.21587 * 119.99724 * 5.25013 * 11 10 7 13 13 C 1.47642 * 119.99957 * 185.25218 * 11 10 7 14 14 C 1.40009 * 119.89360 * 359.72536 * 13 11 10 15 15 C 1.36316 * 120.10558 * 179.72113 * 14 13 11 16 16 C 1.40890 * 119.88916 * 0.54955 * 15 14 13 17 17 C 1.41108 * 120.10372 * 179.74181 * 16 15 14 18 18 H 1.07999 * 120.00331 * 209.56617 * 17 16 15 19 19 C 1.40224 * 119.99848 * 29.56927 * 17 16 15 20 20 N 1.30645 * 120.00233 * 11.45112 * 19 17 16 21 21 Si 1.86802 * 120.00012 * 191.45090 * 19 17 16 22 22 H 1.48491 * 109.47298 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47070 * 119.99937 * 21 19 17 24 24 H 1.48504 * 109.47003 * 239.99697 * 21 19 17 25 25 C 1.40887 * 119.79685 * 359.72451 * 16 15 14 26 26 C 1.36317 * 119.88729 * 359.97438 * 25 16 15 27 27 C 1.53778 * 87.17596 * 334.57016 * 7 6 4 28 28 C 1.53000 * 113.61792 * 140.01710 * 27 7 6 29 29 C 1.52993 * 113.61508 * 270.92643 * 27 7 6 30 30 H 1.08997 * 109.47496 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47510 * 300.00488 * 1 2 3 32 32 H 1.09006 * 109.46837 * 59.99654 * 1 2 3 33 33 H 1.08995 * 109.47202 * 240.00114 * 2 1 3 34 34 H 1.08998 * 109.47028 * 120.00087 * 2 1 3 35 35 H 1.09000 * 113.61076 * 25.47228 * 6 4 3 36 36 H 1.08993 * 113.69571 * 254.49491 * 6 4 3 37 37 H 1.08998 * 109.47357 * 192.58805 * 8 7 6 38 38 H 1.09006 * 109.46848 * 312.58612 * 8 7 6 39 39 H 0.96693 * 113.99785 * 180.02562 * 9 8 7 40 40 H 0.96994 * 119.99810 * 349.49171 * 10 7 6 41 41 H 1.08005 * 119.95014 * 359.97438 * 14 13 11 42 42 H 1.08001 * 120.05639 * 180.27908 * 15 14 13 43 43 H 0.97004 * 120.00367 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.05830 * 180.02562 * 25 16 15 45 45 H 1.08000 * 119.94732 * 179.97438 * 26 25 16 46 46 H 1.09001 * 109.46863 * 60.00152 * 28 27 7 47 47 H 1.08998 * 109.46994 * 180.02562 * 28 27 7 48 48 H 1.08998 * 109.47107 * 300.00688 * 28 27 7 49 49 H 1.09001 * 109.47360 * 59.99694 * 29 27 7 50 50 H 1.09000 * 109.47537 * 179.97438 * 29 27 7 51 51 H 1.09004 * 109.47390 * 299.99689 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9287 0.5458 0.3236 6 6 4.0041 2.0472 -1.3032 7 6 4.9900 2.8313 -0.4211 8 6 6.2872 2.0742 -0.1295 9 8 7.0929 2.0376 -1.3092 10 7 5.2227 4.2036 -0.8780 11 6 5.8913 5.0711 -0.0925 12 8 6.3838 4.6903 0.9518 13 6 6.0255 6.4838 -0.5003 14 6 5.4623 6.9185 -1.7061 15 6 5.5787 8.2231 -2.0840 16 6 6.2770 9.1318 -1.2645 17 6 6.4049 10.4820 -1.6540 18 1 7.2691 11.0529 -1.3478 19 6 5.4100 11.0827 -2.4386 20 7 4.2680 10.4755 -2.6228 21 14 5.7174 12.7511 -3.2205 22 1 7.0792 13.2224 -2.8621 23 1 5.6075 12.6337 -4.6968 24 1 4.7101 13.7232 -2.7249 25 6 6.8470 8.6883 -0.0548 26 6 6.7200 7.3832 0.3176 27 6 3.9484 2.7253 0.7052 28 6 4.5592 2.4539 2.0814 29 6 2.9399 3.8758 0.7176 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.3008 2.6818 -1.8424 36 1 4.4842 1.3069 -1.9431 37 1 6.8322 2.5804 0.6672 38 1 6.0518 1.0562 0.1813 39 1 7.9327 1.5716 -1.1975 40 1 4.8956 4.4879 -1.7458 41 1 4.9312 6.2201 -2.3360 42 1 5.1400 8.5586 -3.0122 43 1 3.5798 10.8908 -3.1658 44 1 7.3828 9.3814 0.5767 45 1 7.1569 7.0421 1.2446 46 1 5.2398 3.2642 2.3430 47 1 3.7651 2.3914 2.8255 48 1 5.1079 1.5125 2.0562 49 1 2.3967 3.8930 -0.2273 50 1 2.2366 3.7337 1.5380 51 1 3.4677 4.8202 0.8505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275565717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:47 Heat of formation + Delta-G solvation = -117.772062 kcal Electronic energy + Delta-G solvation = -31649.010581 eV Core-core repulsion = 27512.764070 eV Total energy + Delta-G solvation = -4136.246511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.20425 -40.16334 -38.80904 -37.93702 -36.95431 -35.60259 -34.42475 -32.05717 -31.98262 -31.33873 -31.20112 -29.18628 -27.92999 -27.01268 -24.58625 -23.78599 -23.42582 -23.04568 -22.64167 -21.10915 -19.43090 -19.23959 -18.54009 -18.11321 -17.80512 -17.20436 -16.62538 -16.44068 -16.11004 -16.02374 -15.75309 -15.71372 -15.10638 -15.02472 -14.66311 -14.46374 -14.31077 -14.10818 -13.88257 -13.82326 -13.59930 -13.34861 -13.26170 -13.17405 -13.03965 -12.97561 -12.85187 -12.63163 -12.57226 -12.36977 -12.20563 -12.12785 -11.82451 -11.71419 -11.52751 -11.39904 -11.29671 -11.16601 -11.07372 -10.31507 -10.23534 -9.84694 -9.55956 -9.32481 -8.72688 -6.48074 0.47086 1.14424 1.39086 1.41829 1.54678 2.16455 2.22262 2.32795 2.82540 2.88455 3.02819 3.32462 3.58635 3.63211 3.71823 3.96602 4.15103 4.21733 4.27194 4.30553 4.32335 4.35521 4.43369 4.45950 4.52557 4.55308 4.61337 4.72974 4.79232 4.87547 4.89753 4.92474 4.92880 5.02663 5.04823 5.07232 5.07974 5.15517 5.18627 5.30752 5.31570 5.37030 5.46320 5.60625 5.74395 5.83879 5.96458 6.00987 6.24960 6.37035 6.56395 6.78553 6.80338 6.87627 6.90413 7.56257 8.22892 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002584 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.190577 B =10834.234722 C =11715.721634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.384 6.384 4 C 0.086 3.914 5 H 0.112 0.888 6 C -0.143 4.143 7 C 0.157 3.843 8 C 0.086 3.914 9 O -0.582 6.582 10 N -0.703 5.703 11 C 0.581 3.419 12 O -0.586 6.586 13 C -0.281 4.281 14 C -0.058 4.058 15 C -0.189 4.189 16 C 0.101 3.899 17 C -0.480 4.480 18 H 0.083 0.917 19 C 0.034 3.966 20 N -0.811 5.811 21 Si 0.989 3.011 22 H -0.257 1.257 23 H -0.261 1.261 24 H -0.265 1.265 25 C -0.248 4.248 26 C -0.036 4.036 27 C -0.079 4.079 28 C -0.138 4.138 29 C -0.104 4.104 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.393 0.607 40 H 0.401 0.599 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.294 0.706 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.060 0.940 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 -19.911 1.055 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.303 6.303 4 C 0.028 3.972 5 H 0.129 0.871 6 C -0.181 4.181 7 C 0.070 3.930 8 C 0.008 3.992 9 O -0.389 6.389 10 N -0.354 5.354 11 C 0.374 3.626 12 O -0.469 6.469 13 C -0.286 4.286 14 C -0.077 4.077 15 C -0.209 4.209 16 C 0.098 3.902 17 C -0.508 4.508 18 H 0.101 0.899 19 C -0.183 4.183 20 N -0.435 5.435 21 Si 0.809 3.191 22 H -0.181 1.181 23 H -0.186 1.186 24 H -0.190 1.190 25 C -0.268 4.268 26 C -0.055 4.055 27 C -0.080 4.080 28 C -0.195 4.195 29 C -0.161 4.161 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.243 0.757 40 H 0.238 0.762 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.105 0.895 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.341 -19.686 1.433 20.448 hybrid contribution 0.562 0.788 -0.357 1.032 sum -4.779 -18.898 1.076 19.522 Atomic orbital electron populations 1.21760 0.93331 1.03215 1.02444 1.22729 0.96093 0.83131 1.00963 1.87970 1.20136 1.27726 1.94485 1.23662 0.81596 0.97086 0.94866 0.87087 1.23740 0.96923 0.99820 0.97636 1.21596 0.92948 0.81809 0.96638 1.22271 0.90766 0.98619 0.87586 1.86420 1.35515 1.81179 1.35809 1.45511 1.58253 1.10489 1.21109 1.18166 0.76269 0.85395 0.82792 1.90539 1.50524 1.79722 1.26135 1.19319 1.14899 0.93468 1.00866 1.20728 0.96704 0.95630 0.94684 1.21000 1.06279 0.92488 1.01120 1.18144 0.88469 0.93859 0.89680 1.20062 1.06238 0.96355 1.28157 0.89898 1.26896 0.93362 1.03996 0.94023 1.69758 1.04350 1.40087 1.29334 0.85049 0.79771 0.75838 0.78454 1.18077 1.18570 1.18976 1.20915 1.11336 0.95918 0.98590 1.20510 0.94893 0.92779 0.97289 1.22476 0.94508 0.95943 0.95116 1.21795 1.00621 1.02049 0.95077 1.21173 0.97177 0.95693 1.02048 0.89185 0.92624 0.92598 0.92360 0.92304 0.89030 0.88874 0.93092 0.90521 0.75743 0.76245 0.86508 0.87139 0.89530 0.87812 0.87684 0.93038 0.92174 0.90986 0.92326 0.92083 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.05 0.69 6.50 71.98 0.47 1.15 16 3 O -0.38 -8.13 9.44 -148.98 -1.41 -9.53 16 4 C 0.09 1.74 3.38 31.22 0.11 1.84 16 5 H 0.11 1.69 7.14 -2.39 -0.02 1.68 16 6 C -0.14 -3.14 6.86 31.21 0.21 -2.92 16 7 C 0.16 4.25 0.66 4.13 0.00 4.25 16 8 C 0.09 2.16 4.85 71.98 0.35 2.51 16 9 O -0.58 -14.64 13.58 -148.98 -2.02 -16.66 16 10 N -0.70 -23.51 4.31 -423.54 -1.82 -25.33 16 11 C 0.58 24.02 6.41 86.73 0.56 24.58 16 12 O -0.59 -25.84 12.56 -3.99 -0.05 -25.89 16 13 C -0.28 -12.99 5.89 -19.93 -0.12 -13.11 16 14 C -0.06 -2.66 9.47 22.25 0.21 -2.45 16 15 C -0.19 -9.68 8.59 22.47 0.19 -9.48 16 16 C 0.10 5.41 5.54 -21.28 -0.12 5.30 16 17 C -0.48 -24.96 9.05 23.46 0.21 -24.75 16 18 H 0.08 4.15 7.88 -2.91 -0.02 4.12 16 19 C 0.03 1.65 5.23 85.35 0.45 2.09 16 20 N -0.81 -40.27 10.92 21.87 0.24 -40.03 16 21 Si 0.99 36.23 29.58 68.60 2.03 38.26 16 22 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 23 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 24 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 25 C -0.25 -12.55 9.73 22.47 0.22 -12.33 16 26 C -0.04 -1.72 9.52 22.25 0.21 -1.51 16 27 C -0.08 -2.04 1.06 -51.65 -0.05 -2.10 16 28 C -0.14 -3.49 8.12 71.98 0.58 -2.90 16 29 C -0.10 -3.09 7.86 71.98 0.57 -2.53 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 2.12 7.66 -2.39 -0.02 2.10 16 36 H 0.09 1.80 8.10 -2.39 -0.02 1.78 16 37 H 0.05 1.57 6.02 -2.39 -0.01 1.56 16 38 H 0.08 1.39 6.77 -2.38 -0.02 1.37 16 39 H 0.39 6.31 9.12 -74.06 -0.68 5.64 16 40 H 0.40 12.72 6.69 -92.71 -0.62 12.10 16 41 H 0.12 4.51 6.38 -2.91 -0.02 4.49 16 42 H 0.11 5.77 6.29 -2.91 -0.02 5.75 16 43 H 0.29 13.02 8.29 -92.71 -0.77 12.25 16 44 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 45 H 0.11 4.89 7.63 -2.91 -0.02 4.87 16 46 H 0.05 1.65 6.37 -2.39 -0.02 1.64 16 47 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.07 1.44 6.88 -2.39 -0.02 1.42 16 49 H 0.06 1.71 7.18 -2.39 -0.02 1.69 16 50 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.03 1.07 6.88 -2.39 -0.02 1.05 16 Total: -1.00 -64.60 401.05 1.42 -63.19 By element: Atomic # 1 Polarization: 49.91 SS G_CDS: -0.34 Total: 49.57 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.79 Total: -33.57 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -1.59 Total: -65.36 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -3.48 Total: -52.08 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -64.60 1.42 -63.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275565717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.583 kcal (2) G-P(sol) polarization free energy of solvation -64.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds