Wall clock time and date at job start Wed Apr 1 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46958 * 2 1 4 4 C 1.42902 * 113.99986 * 179.97438 * 3 2 1 5 5 H 1.09008 * 112.85061 * 21.68807 * 4 3 2 6 6 C 1.53773 * 113.61741 * 250.49278 * 4 3 2 7 7 C 1.53781 * 87.08387 * 219.93561 * 6 4 3 8 8 O 1.42898 * 113.61731 * 139.98166 * 7 6 4 9 9 C 1.53003 * 113.61228 * 270.79821 * 7 6 4 10 10 N 1.46504 * 109.47290 * 284.13762 * 9 7 6 11 11 C 1.34770 * 120.00101 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00234 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.99767 * 179.97438 * 11 10 9 14 14 C 1.40010 * 119.89976 * 359.73073 * 13 11 10 15 15 C 1.36315 * 120.11139 * 179.75640 * 14 13 11 16 16 C 1.40890 * 119.88520 * 0.51631 * 15 14 13 17 17 C 1.41109 * 120.09905 * 179.71944 * 16 15 14 18 18 H 1.07997 * 120.00034 * 204.65292 * 17 16 15 19 19 C 1.40229 * 120.00142 * 24.65462 * 17 16 15 20 20 N 1.30641 * 120.00275 * 17.85988 * 19 17 16 21 21 Si 1.86802 * 119.99923 * 197.86695 * 19 17 16 22 22 H 1.48501 * 109.47482 * 59.99531 * 21 19 17 23 23 H 1.48495 * 109.47457 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46832 * 299.99805 * 21 19 17 25 25 C 1.40888 * 119.79876 * 359.73741 * 16 15 14 26 26 C 1.36311 * 119.88933 * 0.02562 * 25 16 15 27 27 C 1.53776 * 113.69237 * 152.95307 * 4 3 2 28 28 C 1.53000 * 113.61445 * 25.44891 * 27 4 3 29 29 C 1.52998 * 113.62045 * 254.54144 * 27 4 3 30 30 H 1.08999 * 109.47024 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46815 * 300.00678 * 1 2 3 32 32 H 1.08998 * 109.46928 * 60.00519 * 1 2 3 33 33 H 1.08993 * 109.47178 * 239.99701 * 2 1 3 34 34 H 1.08998 * 109.46928 * 119.99481 * 2 1 3 35 35 H 1.09002 * 113.61535 * 105.38006 * 6 4 3 36 36 H 1.09004 * 113.68845 * 334.49649 * 6 4 3 37 37 H 0.96695 * 114.00077 * 79.49787 * 8 7 6 38 38 H 1.09005 * 109.47194 * 44.13464 * 9 7 6 39 39 H 1.09000 * 109.47252 * 164.13349 * 9 7 6 40 40 H 0.97004 * 119.99491 * 359.97438 * 10 9 7 41 41 H 1.08003 * 119.94231 * 0.02562 * 14 13 11 42 42 H 1.07998 * 120.05559 * 180.23349 * 15 14 13 43 43 H 0.96998 * 120.00499 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.05632 * 180.02562 * 25 16 15 45 45 H 1.07998 * 119.94860 * 180.02562 * 26 25 16 46 46 H 1.09002 * 109.47547 * 157.49604 * 28 27 4 47 47 H 1.09005 * 109.47119 * 277.49162 * 28 27 4 48 48 H 1.09003 * 109.47583 * 37.49038 * 28 27 4 49 49 H 1.09002 * 109.47115 * 322.50822 * 29 27 4 50 50 H 1.09006 * 109.47014 * 82.50094 * 29 27 4 51 51 H 1.08994 * 109.47493 * 202.50150 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9268 0.5630 -0.3703 6 6 4.0073 1.9780 1.3288 7 6 4.9930 2.8061 0.4876 8 8 5.2216 4.1196 1.0019 9 6 6.2892 2.0641 0.1557 10 7 7.1505 2.0317 1.3404 11 6 8.3526 1.4251 1.2832 12 8 8.7226 0.9052 0.2483 13 6 9.2207 1.3930 2.4770 14 6 8.7954 1.9982 3.6658 15 6 9.5913 1.9667 4.7720 16 6 10.8485 1.3333 4.7145 17 6 11.6785 1.3032 5.8552 18 1 12.7473 1.1966 5.7427 19 6 11.1157 1.4118 7.1350 20 7 9.8396 1.1920 7.3083 21 14 12.1906 1.8711 8.5922 22 1 12.8029 3.2031 8.3553 23 1 11.3614 1.9199 9.8231 24 1 13.2619 0.8559 8.7564 25 6 11.2745 0.7303 3.5146 26 6 10.4695 0.7626 2.4150 27 6 3.9481 2.7591 -0.6397 28 6 2.9411 3.9099 -0.5903 29 6 4.5549 2.5580 -2.0297 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 4.4873 1.2041 1.9278 36 1 3.3070 2.5843 1.9033 37 1 5.8435 4.1495 1.7418 38 1 6.0559 1.0447 -0.1518 39 1 6.8053 2.5790 -0.6547 40 1 6.8554 2.4468 2.1660 41 1 7.8332 2.4870 3.7076 42 1 9.2607 2.4306 5.6895 43 1 9.4502 1.2674 8.1934 44 1 12.2371 0.2432 3.4660 45 1 10.7949 0.3004 1.4948 46 1 3.4698 4.8593 -0.6761 47 1 2.2356 3.8111 -1.4153 48 1 2.4004 3.8794 0.3557 49 1 5.1024 1.6158 -2.0544 50 1 3.7587 2.5351 -2.7739 51 1 5.2357 3.3798 -2.2514 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276690569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:46 Heat of formation + Delta-G solvation = -104.808581 kcal Electronic energy + Delta-G solvation = -30708.905781 eV Core-core repulsion = 26573.221409 eV Total energy + Delta-G solvation = -4135.684372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.08365 -39.02032 -37.56135 -37.04991 -35.15276 -33.93211 -33.87809 -31.38488 -30.73818 -30.21074 -29.50043 -28.24963 -26.82058 -25.51118 -23.44815 -22.83906 -22.66611 -21.68656 -20.95861 -19.80618 -18.62117 -17.78509 -17.55183 -16.86486 -16.16867 -15.84890 -15.67253 -15.38561 -15.27708 -14.84022 -14.51563 -14.19392 -14.03766 -13.74807 -13.57092 -13.26729 -13.20802 -12.87719 -12.73699 -12.65986 -12.55883 -12.36544 -12.18249 -12.14708 -12.01591 -11.93258 -11.65864 -11.46801 -11.40659 -11.30265 -11.09156 -11.03361 -10.74933 -10.70077 -10.49158 -10.11820 -9.87704 -9.61079 -9.54445 -9.39696 -9.06211 -8.74308 -7.78047 -7.60073 -7.08619 -4.65402 2.17146 2.89073 2.91465 2.95332 2.98476 3.33840 3.52890 3.69841 3.79679 4.00074 4.15786 4.35207 4.43251 4.51615 4.60438 4.79146 4.83660 4.98900 5.05034 5.11633 5.20359 5.36760 5.45154 5.51265 5.56887 5.57813 5.61798 5.63102 5.69597 5.78455 5.80400 5.87822 5.90425 5.93301 5.97008 6.04579 6.19092 6.26476 6.33602 6.71443 6.76866 6.78162 6.98365 7.03986 7.07750 7.37748 7.48060 7.58227 7.72105 7.80537 8.01617 8.10985 8.34374 8.57858 8.69848 8.97194 9.83259 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.002197 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.968321 B =12743.995259 C =13391.678707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.072 3.928 5 H 0.090 0.910 6 C -0.181 4.181 7 C 0.103 3.897 8 O -0.539 6.539 9 C 0.117 3.883 10 N -0.743 5.743 11 C 0.574 3.426 12 O -0.573 6.573 13 C -0.286 4.286 14 C -0.062 4.062 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.441 4.441 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.771 5.771 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.262 1.262 25 C -0.239 4.239 26 C -0.021 4.021 27 C -0.054 4.054 28 C -0.108 4.108 29 C -0.144 4.144 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.377 0.623 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.394 0.606 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.288 0.712 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 1.889 -8.577 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.285 6.285 4 C 0.014 3.986 5 H 0.108 0.892 6 C -0.219 4.219 7 C 0.062 3.938 8 O -0.345 6.345 9 C -0.007 4.007 10 N -0.398 5.398 11 C 0.369 3.631 12 O -0.455 6.455 13 C -0.291 4.291 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.468 4.468 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.394 5.394 21 Si 0.738 3.262 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.258 4.258 26 C -0.040 4.040 27 C -0.055 4.055 28 C -0.165 4.165 29 C -0.201 4.201 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.225 0.775 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.229 0.771 41 H 0.105 0.895 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.561 1.813 -9.603 18.375 hybrid contribution 0.779 -0.160 1.678 1.857 sum -14.782 1.653 -7.925 16.853 Atomic orbital electron populations 1.21735 0.93801 1.02173 1.03045 1.22522 0.95540 0.84102 1.00140 1.87932 1.20017 1.26004 1.94561 1.23585 0.81483 0.97271 0.96263 0.89220 1.24210 0.99172 1.00615 0.97920 1.22594 0.92344 0.83316 0.95588 1.86527 1.67652 1.26698 1.53607 1.21556 0.89313 1.00260 0.89573 1.45830 1.19104 1.61030 1.13786 1.18581 0.79885 0.76082 0.88539 1.90639 1.74092 1.47922 1.32822 1.18852 0.98589 1.18134 0.93504 1.20438 0.97205 0.97594 0.92935 1.20974 0.96684 1.04464 0.97569 1.17791 0.91669 0.86184 0.91845 1.19835 0.95623 1.41257 0.90113 0.89692 1.26109 0.95390 0.91999 1.01237 1.69726 1.12925 1.31046 1.25662 0.86251 0.80509 0.80582 0.78896 1.18430 1.20024 1.18629 1.20715 1.01240 1.09079 0.94781 1.20361 0.92274 0.94508 0.96893 1.22185 0.94074 0.95560 0.93712 1.21220 0.96938 0.96164 1.02161 1.21850 1.00928 1.02362 0.95005 0.91207 0.91872 0.91927 0.93394 0.93321 0.90491 0.88111 0.77510 0.91055 0.90670 0.77082 0.89495 0.86164 0.90116 0.88355 0.88109 0.91915 0.92547 0.92035 0.92063 0.91950 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.46 6.51 37.16 0.24 0.71 16 3 O -0.37 -3.95 9.45 -35.23 -0.33 -4.28 16 4 C 0.07 0.76 3.35 -25.93 -0.09 0.68 16 5 H 0.09 0.90 7.18 -51.92 -0.37 0.53 16 6 C -0.18 -2.00 6.98 -25.92 -0.18 -2.19 16 7 C 0.10 1.19 1.31 -89.81 -0.12 1.07 16 8 O -0.54 -6.42 12.48 -35.23 -0.44 -6.86 16 9 C 0.12 1.60 3.93 -4.04 -0.02 1.58 16 10 N -0.74 -11.65 5.29 -61.31 -0.32 -11.97 16 11 C 0.57 11.76 7.76 -12.42 -0.10 11.67 16 12 O -0.57 -13.29 16.32 5.29 0.09 -13.20 16 13 C -0.29 -6.34 5.89 -104.73 -0.62 -6.95 16 14 C -0.06 -1.33 9.47 -39.61 -0.38 -1.71 16 15 C -0.18 -4.23 8.64 -39.27 -0.34 -4.57 16 16 C 0.13 3.20 5.58 -106.80 -0.60 2.61 16 17 C -0.44 -10.74 9.04 -37.75 -0.34 -11.09 16 18 H 0.09 1.97 7.91 -52.49 -0.42 1.56 16 19 C 0.07 1.69 5.14 -17.31 -0.09 1.61 16 20 N -0.77 -18.06 10.95 55.56 0.61 -17.45 16 21 Si 0.91 16.94 29.60 -169.99 -5.03 11.91 16 22 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 23 H -0.28 -4.97 7.11 56.52 0.40 -4.56 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.24 -5.67 9.73 -39.27 -0.38 -6.05 16 26 C -0.02 -0.49 9.52 -39.61 -0.38 -0.87 16 27 C -0.05 -0.58 1.30 -153.70 -0.20 -0.78 16 28 C -0.11 -1.15 7.92 37.16 0.29 -0.85 16 29 C -0.14 -1.42 8.13 37.16 0.30 -1.12 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.10 1.14 7.66 -51.93 -0.40 0.74 16 37 H 0.38 3.76 7.74 45.56 0.35 4.11 16 38 H 0.07 0.99 6.95 -51.93 -0.36 0.63 16 39 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 40 H 0.39 5.41 5.42 -40.82 -0.22 5.19 16 41 H 0.09 1.53 6.37 -52.48 -0.33 1.20 16 42 H 0.12 2.90 6.16 -52.49 -0.32 2.57 16 43 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 44 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 46 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.69 7.19 -51.93 -0.37 0.32 16 49 H 0.06 0.60 6.99 -51.93 -0.36 0.23 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 LS Contribution 408.22 15.07 6.15 6.15 Total: -1.00 -28.43 408.22 -9.25 -37.68 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -7.38 Total: 14.96 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.59 Total: -16.94 kcal Atomic # 7 Polarization: -29.71 SS G_CDS: 0.28 Total: -29.42 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.69 Total: -24.34 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -28.43 -9.25 -37.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276690569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.130 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds