Wall clock time and date at job start Wed Apr 1 2020 05:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46958 * 2 1 4 4 C 1.42902 * 113.99986 * 179.97438 * 3 2 1 5 5 H 1.09008 * 112.85061 * 21.68807 * 4 3 2 6 6 C 1.53773 * 113.61741 * 250.49278 * 4 3 2 7 7 C 1.53781 * 87.08387 * 219.93561 * 6 4 3 8 8 O 1.42898 * 113.61731 * 139.98166 * 7 6 4 9 9 C 1.53003 * 113.61228 * 270.79821 * 7 6 4 10 10 N 1.46504 * 109.47290 * 284.13762 * 9 7 6 11 11 C 1.34770 * 120.00101 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00234 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.99767 * 179.97438 * 11 10 9 14 14 C 1.40010 * 119.89976 * 359.73073 * 13 11 10 15 15 C 1.36315 * 120.11139 * 179.75640 * 14 13 11 16 16 C 1.40890 * 119.88520 * 0.51631 * 15 14 13 17 17 C 1.41109 * 120.09905 * 179.71944 * 16 15 14 18 18 H 1.07997 * 120.00034 * 204.65292 * 17 16 15 19 19 C 1.40229 * 120.00142 * 24.65462 * 17 16 15 20 20 N 1.30641 * 120.00275 * 17.85988 * 19 17 16 21 21 Si 1.86802 * 119.99923 * 197.86695 * 19 17 16 22 22 H 1.48501 * 109.47482 * 59.99531 * 21 19 17 23 23 H 1.48495 * 109.47457 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46832 * 299.99805 * 21 19 17 25 25 C 1.40888 * 119.79876 * 359.73741 * 16 15 14 26 26 C 1.36311 * 119.88933 * 0.02562 * 25 16 15 27 27 C 1.53776 * 113.69237 * 152.95307 * 4 3 2 28 28 C 1.53000 * 113.61445 * 25.44891 * 27 4 3 29 29 C 1.52998 * 113.62045 * 254.54144 * 27 4 3 30 30 H 1.08999 * 109.47024 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46815 * 300.00678 * 1 2 3 32 32 H 1.08998 * 109.46928 * 60.00519 * 1 2 3 33 33 H 1.08993 * 109.47178 * 239.99701 * 2 1 3 34 34 H 1.08998 * 109.46928 * 119.99481 * 2 1 3 35 35 H 1.09002 * 113.61535 * 105.38006 * 6 4 3 36 36 H 1.09004 * 113.68845 * 334.49649 * 6 4 3 37 37 H 0.96695 * 114.00077 * 79.49787 * 8 7 6 38 38 H 1.09005 * 109.47194 * 44.13464 * 9 7 6 39 39 H 1.09000 * 109.47252 * 164.13349 * 9 7 6 40 40 H 0.97004 * 119.99491 * 359.97438 * 10 9 7 41 41 H 1.08003 * 119.94231 * 0.02562 * 14 13 11 42 42 H 1.07998 * 120.05559 * 180.23349 * 15 14 13 43 43 H 0.96998 * 120.00499 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.05632 * 180.02562 * 25 16 15 45 45 H 1.07998 * 119.94860 * 180.02562 * 26 25 16 46 46 H 1.09002 * 109.47547 * 157.49604 * 28 27 4 47 47 H 1.09005 * 109.47119 * 277.49162 * 28 27 4 48 48 H 1.09003 * 109.47583 * 37.49038 * 28 27 4 49 49 H 1.09002 * 109.47115 * 322.50822 * 29 27 4 50 50 H 1.09006 * 109.47014 * 82.50094 * 29 27 4 51 51 H 1.08994 * 109.47493 * 202.50150 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9268 0.5630 -0.3703 6 6 4.0073 1.9780 1.3288 7 6 4.9930 2.8061 0.4876 8 8 5.2216 4.1196 1.0019 9 6 6.2892 2.0641 0.1557 10 7 7.1505 2.0317 1.3404 11 6 8.3526 1.4251 1.2832 12 8 8.7226 0.9052 0.2483 13 6 9.2207 1.3930 2.4770 14 6 8.7954 1.9982 3.6658 15 6 9.5913 1.9667 4.7720 16 6 10.8485 1.3333 4.7145 17 6 11.6785 1.3032 5.8552 18 1 12.7473 1.1966 5.7427 19 6 11.1157 1.4118 7.1350 20 7 9.8396 1.1920 7.3083 21 14 12.1906 1.8711 8.5922 22 1 12.8029 3.2031 8.3553 23 1 11.3614 1.9199 9.8231 24 1 13.2619 0.8559 8.7564 25 6 11.2745 0.7303 3.5146 26 6 10.4695 0.7626 2.4150 27 6 3.9481 2.7591 -0.6397 28 6 2.9411 3.9099 -0.5903 29 6 4.5549 2.5580 -2.0297 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 4.4873 1.2041 1.9278 36 1 3.3070 2.5843 1.9033 37 1 5.8435 4.1495 1.7418 38 1 6.0559 1.0447 -0.1518 39 1 6.8053 2.5790 -0.6547 40 1 6.8554 2.4468 2.1660 41 1 7.8332 2.4870 3.7076 42 1 9.2607 2.4306 5.6895 43 1 9.4502 1.2674 8.1934 44 1 12.2371 0.2432 3.4660 45 1 10.7949 0.3004 1.4948 46 1 3.4698 4.8593 -0.6761 47 1 2.2356 3.8111 -1.4153 48 1 2.4004 3.8794 0.3557 49 1 5.1024 1.6158 -2.0544 50 1 3.7587 2.5351 -2.7739 51 1 5.2357 3.3798 -2.2514 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276690569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:44 Heat of formation + Delta-G solvation = -121.832419 kcal Electronic energy + Delta-G solvation = -30709.643990 eV Core-core repulsion = 26573.221409 eV Total energy + Delta-G solvation = -4136.422581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.03628 -40.59636 -38.92612 -38.27792 -36.07734 -35.67577 -35.27938 -32.21866 -32.05654 -31.35230 -31.26498 -29.35195 -28.03570 -26.97010 -24.33717 -23.89052 -23.52584 -23.09969 -22.70783 -21.37648 -19.52031 -19.37930 -19.06854 -17.84449 -17.40929 -16.99681 -16.96169 -16.49920 -16.35276 -16.09490 -15.74904 -15.66519 -15.18245 -15.00963 -14.83331 -14.69363 -14.45057 -14.13281 -13.86929 -13.74382 -13.65170 -13.40640 -13.35486 -13.19648 -13.18854 -12.98483 -12.86614 -12.84712 -12.64367 -12.46937 -12.36664 -12.17800 -11.84713 -11.80165 -11.57664 -11.45558 -11.36845 -11.11702 -10.80307 -10.73282 -10.33555 -10.16217 -9.57860 -9.41612 -8.80074 -6.48691 0.43018 1.15107 1.38876 1.44249 1.51928 2.10370 2.17258 2.19589 2.57951 2.77486 3.12833 3.25936 3.41056 3.51935 3.68809 3.70382 3.99861 4.16504 4.19688 4.22299 4.29480 4.30712 4.37326 4.44255 4.48708 4.51096 4.64095 4.65985 4.79187 4.80038 4.86407 4.92185 4.93763 5.01653 5.02435 5.04526 5.08530 5.11177 5.15275 5.27483 5.29417 5.33351 5.46375 5.49046 5.58318 5.81012 5.93016 5.98928 6.22593 6.28745 6.53153 6.57211 6.66277 6.76764 6.88445 7.37777 8.14762 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.002197 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.968321 B =12743.995259 C =13391.678707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.378 6.378 4 C 0.074 3.926 5 H 0.095 0.905 6 C -0.177 4.177 7 C 0.108 3.892 8 O -0.546 6.546 9 C 0.120 3.880 10 N -0.723 5.723 11 C 0.575 3.425 12 O -0.602 6.602 13 C -0.293 4.293 14 C -0.052 4.052 15 C -0.198 4.198 16 C 0.101 3.899 17 C -0.472 4.472 18 H 0.085 0.915 19 C 0.039 3.961 20 N -0.796 5.796 21 Si 0.986 3.014 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.259 1.259 25 C -0.253 4.253 26 C -0.033 4.033 27 C -0.055 4.055 28 C -0.102 4.102 29 C -0.144 4.144 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.384 0.616 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.405 0.595 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.297 0.703 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.409 2.306 -8.278 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.297 6.297 4 C 0.016 3.984 5 H 0.113 0.887 6 C -0.215 4.215 7 C 0.067 3.933 8 O -0.353 6.353 9 C -0.003 4.003 10 N -0.377 5.377 11 C 0.369 3.631 12 O -0.486 6.486 13 C -0.298 4.298 14 C -0.071 4.071 15 C -0.217 4.217 16 C 0.097 3.903 17 C -0.499 4.499 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.419 5.419 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.188 1.188 24 H -0.183 1.183 25 C -0.273 4.273 26 C -0.052 4.052 27 C -0.056 4.056 28 C -0.159 4.159 29 C -0.201 4.201 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.234 0.766 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.243 0.757 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.942 2.244 -9.303 19.458 hybrid contribution 1.106 -0.309 1.503 1.891 sum -15.836 1.935 -7.800 17.759 Atomic orbital electron populations 1.21742 0.92710 1.03241 1.02762 1.22710 0.96493 0.83260 1.00572 1.87919 1.19878 1.27338 1.94575 1.23565 0.81741 0.97343 0.95729 0.88691 1.24170 0.98910 1.00350 0.98107 1.22497 0.91380 0.83053 0.96411 1.86529 1.67972 1.26769 1.54045 1.21647 0.89687 1.00673 0.88340 1.45603 1.17730 1.59280 1.15054 1.18353 0.80929 0.76327 0.87459 1.90625 1.75057 1.49384 1.33561 1.19131 0.98579 1.17524 0.94553 1.20712 0.98215 0.96505 0.91669 1.21018 0.97064 1.05398 0.98225 1.18148 0.92660 0.86926 0.92519 1.20093 0.95775 1.42914 0.91168 0.89711 1.26904 0.96651 0.91199 1.03320 1.69744 1.14289 1.30964 1.26948 0.85177 0.78651 0.80061 0.75524 1.18254 1.18787 1.18344 1.20845 1.01795 1.09639 0.94979 1.20516 0.92996 0.94925 0.96790 1.22222 0.93713 0.95768 0.93887 1.21160 0.96868 0.95818 1.02069 1.21847 1.01230 1.02184 0.94797 0.89497 0.92377 0.91953 0.92543 0.93306 0.90791 0.88218 0.76616 0.90898 0.91337 0.75739 0.85712 0.86769 0.89143 0.87896 0.87950 0.92423 0.91738 0.92791 0.92077 0.90739 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.05 0.72 6.51 71.98 0.47 1.19 16 3 O -0.38 -7.52 9.45 -148.98 -1.41 -8.93 16 4 C 0.07 1.45 3.35 31.12 0.10 1.55 16 5 H 0.10 1.74 7.18 -2.38 -0.02 1.73 16 6 C -0.18 -3.63 6.98 31.12 0.22 -3.41 16 7 C 0.11 2.31 1.31 -10.27 -0.01 2.30 16 8 O -0.55 -12.02 12.48 -148.98 -1.86 -13.88 16 9 C 0.12 3.10 3.93 86.38 0.34 3.44 16 10 N -0.72 -21.49 5.29 -466.15 -2.47 -23.96 16 11 C 0.58 23.06 7.76 86.73 0.67 23.74 16 12 O -0.60 -27.66 16.32 -3.97 -0.06 -27.72 16 13 C -0.29 -12.88 5.89 -19.93 -0.12 -13.00 16 14 C -0.05 -2.18 9.47 22.25 0.21 -1.96 16 15 C -0.20 -9.47 8.64 22.47 0.19 -9.28 16 16 C 0.10 5.13 5.58 -21.28 -0.12 5.01 16 17 C -0.47 -23.45 9.04 23.46 0.21 -23.24 16 18 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 19 C 0.04 1.76 5.14 85.35 0.44 2.20 16 20 N -0.80 -37.23 10.95 21.87 0.24 -36.99 16 21 Si 0.99 34.17 29.60 68.60 2.03 36.20 16 22 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 23 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 24 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 25 C -0.25 -12.35 9.73 22.47 0.22 -12.13 16 26 C -0.03 -1.55 9.52 22.25 0.21 -1.34 16 27 C -0.06 -1.09 1.30 -51.66 -0.07 -1.15 16 28 C -0.10 -2.01 7.92 71.98 0.57 -1.44 16 29 C -0.14 -2.58 8.13 71.98 0.59 -2.00 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 36 H 0.10 2.09 7.66 -2.39 -0.02 2.07 16 37 H 0.38 6.87 7.74 -74.06 -0.57 6.30 16 38 H 0.07 1.91 6.95 -2.38 -0.02 1.89 16 39 H 0.07 1.91 7.72 -2.39 -0.02 1.90 16 40 H 0.41 10.20 5.42 -92.71 -0.50 9.70 16 41 H 0.13 4.11 6.37 -2.91 -0.02 4.10 16 42 H 0.11 5.54 6.16 -2.91 -0.02 5.53 16 43 H 0.30 12.37 8.29 -92.71 -0.77 11.60 16 44 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 45 H 0.10 4.68 7.63 -2.91 -0.02 4.66 16 46 H 0.06 1.19 7.84 -2.39 -0.02 1.17 16 47 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.05 1.14 7.19 -2.39 -0.02 1.12 16 49 H 0.06 1.09 6.99 -2.39 -0.02 1.08 16 50 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 51 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 Total: -1.00 -60.91 408.22 1.21 -59.70 By element: Atomic # 1 Polarization: 46.34 SS G_CDS: -0.13 Total: 46.21 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 4.87 Total: -30.63 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -2.23 Total: -60.94 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -3.33 Total: -50.53 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Total: -60.91 1.21 -59.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276690569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.136 kcal (2) G-P(sol) polarization free energy of solvation -60.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds