Wall clock time and date at job start Wed Apr 1 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.46962 * 2 1 4 4 C 1.42902 * 113.99695 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.85329 * 341.19455 * 4 3 2 6 6 C 1.53787 * 113.61202 * 112.50747 * 4 3 2 7 7 C 1.53777 * 87.08031 * 139.97635 * 6 4 3 8 8 O 1.42902 * 113.61470 * 89.11771 * 7 6 4 9 9 C 1.53004 * 113.69135 * 220.00201 * 7 6 4 10 10 N 1.46497 * 109.47006 * 284.06863 * 9 7 6 11 11 C 1.34782 * 119.99664 * 179.97438 * 10 9 7 12 12 O 1.21589 * 120.00001 * 0.02562 * 11 10 9 13 13 C 1.47646 * 120.00157 * 179.97438 * 11 10 9 14 14 C 1.40021 * 119.89148 * 359.72763 * 13 11 10 15 15 C 1.36312 * 120.10319 * 179.71428 * 14 13 11 16 16 C 1.40890 * 119.89342 * 0.57982 * 15 14 13 17 17 C 1.41106 * 120.10505 * 179.71273 * 16 15 14 18 18 H 1.07995 * 119.99982 * 204.61817 * 17 16 15 19 19 C 1.40233 * 119.99868 * 24.62317 * 17 16 15 20 20 N 1.30651 * 119.99720 * 17.88012 * 19 17 16 21 21 Si 1.86795 * 119.99992 * 197.87767 * 19 17 16 22 22 H 1.48505 * 109.47019 * 60.00372 * 21 19 17 23 23 H 1.48496 * 109.46964 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47362 * 300.00127 * 21 19 17 25 25 C 1.40890 * 119.79072 * 359.69719 * 16 15 14 26 26 C 1.36317 * 119.89400 * 359.97438 * 25 16 15 27 27 C 1.53772 * 87.08474 * 334.56439 * 7 6 4 28 28 C 1.52999 * 113.61800 * 139.97889 * 27 7 6 29 29 C 1.52997 * 113.61643 * 270.88482 * 27 7 6 30 30 H 1.08994 * 109.47189 * 60.00183 * 1 2 3 31 31 H 1.09006 * 109.46625 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46942 * 299.99755 * 1 2 3 33 33 H 1.09006 * 109.47477 * 240.00213 * 2 1 3 34 34 H 1.09002 * 109.47454 * 120.00017 * 2 1 3 35 35 H 1.08997 * 113.61486 * 25.42570 * 6 4 3 36 36 H 1.09001 * 113.61213 * 254.52488 * 6 4 3 37 37 H 0.96698 * 114.00395 * 82.49897 * 8 7 6 38 38 H 1.09004 * 109.46662 * 44.06682 * 9 7 6 39 39 H 1.08996 * 109.46836 * 164.06534 * 9 7 6 40 40 H 0.96999 * 120.00462 * 359.97438 * 10 9 7 41 41 H 1.08003 * 119.94488 * 0.02562 * 14 13 11 42 42 H 1.07999 * 120.05234 * 180.25071 * 15 14 13 43 43 H 0.96998 * 119.99749 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.05092 * 179.97438 * 25 16 15 45 45 H 1.07993 * 119.94942 * 180.02562 * 26 25 16 46 46 H 1.09008 * 109.46634 * 60.00219 * 28 27 7 47 47 H 1.08998 * 109.47465 * 179.97438 * 28 27 7 48 48 H 1.08996 * 109.47376 * 300.00305 * 28 27 7 49 49 H 1.09002 * 109.47001 * 59.99914 * 29 27 7 50 50 H 1.09004 * 109.47499 * 179.97438 * 29 27 7 51 51 H 1.08996 * 109.47164 * 299.99884 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9280 0.5456 0.3229 6 6 4.0018 2.0467 -1.3025 7 6 4.9895 2.8315 -0.4233 8 8 6.2013 2.1244 -0.1522 9 6 5.2322 4.2650 -0.9002 10 7 6.1140 4.2477 -2.0699 11 6 6.4671 5.4045 -2.6647 12 8 6.0542 6.4623 -2.2301 13 6 7.3563 5.3872 -3.8432 14 6 7.8360 4.1682 -4.3377 15 6 8.6524 4.1469 -5.4291 16 6 9.0234 5.3548 -6.0522 17 6 9.8732 5.3383 -7.1785 18 1 10.4708 6.2057 -7.4168 19 6 9.9417 4.1955 -7.9885 20 7 8.9969 3.2951 -7.9290 21 14 11.3837 3.9608 -9.1524 22 1 12.6477 3.9248 -8.3737 23 1 11.2211 2.6826 -9.8905 24 1 11.4291 5.0882 -10.1180 25 6 8.5428 6.5792 -5.5474 26 6 7.7214 6.5901 -4.4596 27 6 3.9489 2.7252 0.7039 28 6 4.5609 2.4535 2.0795 29 6 2.9404 3.8756 0.7175 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2978 2.6807 -1.8413 36 1 4.4806 1.3053 -1.9423 37 1 6.8598 2.1876 -0.8575 38 1 4.2809 4.7243 -1.1690 39 1 5.7001 4.8395 -0.1008 40 1 6.4437 3.4038 -2.4164 41 1 7.5545 3.2431 -3.8567 42 1 9.0187 3.2059 -5.8122 43 1 9.0445 2.5045 -8.4889 44 1 8.8249 7.5077 -6.0216 45 1 7.3522 7.5281 -4.0722 46 1 5.2417 3.2638 2.3408 47 1 3.7675 2.3916 2.8244 48 1 5.1096 1.5120 2.0536 49 1 2.3963 3.8931 -0.2269 50 1 2.2377 3.7332 1.5386 51 1 3.4682 4.8200 0.8502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276690574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:50 Heat of formation + Delta-G solvation = -103.806627 kcal Electronic energy + Delta-G solvation = -30639.581144 eV Core-core repulsion = 26503.940220 eV Total energy + Delta-G solvation = -4135.640924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.02745 -39.00326 -37.56262 -37.03423 -35.12524 -33.91333 -33.86428 -31.39786 -30.62265 -30.22220 -29.48593 -28.16071 -27.13771 -25.62483 -23.27289 -22.76188 -22.61155 -21.61642 -20.92603 -19.78347 -18.78755 -17.68455 -17.52367 -16.80152 -16.18806 -15.86448 -15.65893 -15.52760 -15.33525 -14.77771 -14.51528 -14.06337 -13.86369 -13.77806 -13.56098 -13.32116 -13.22461 -12.77038 -12.70284 -12.67945 -12.54873 -12.41536 -12.17979 -12.12349 -12.03943 -11.94576 -11.70292 -11.47473 -11.37681 -11.29257 -11.10179 -11.02668 -10.98499 -10.68418 -10.26658 -10.10216 -9.87101 -9.59671 -9.51772 -9.38334 -9.02104 -8.68929 -7.76458 -7.58416 -7.07438 -4.64005 2.19239 2.89868 2.91918 2.95906 2.99851 3.40391 3.61669 3.70129 3.71405 3.83652 4.18550 4.45581 4.49423 4.53397 4.63880 4.79301 4.85146 5.01700 5.04468 5.09844 5.23355 5.35330 5.43960 5.52946 5.57883 5.61707 5.63637 5.72077 5.72784 5.74164 5.78102 5.84667 5.91318 5.97045 5.97845 6.09070 6.22403 6.25766 6.28336 6.72907 6.78813 6.81888 7.00196 7.06291 7.09314 7.39144 7.42109 7.60022 7.73800 7.81889 8.03105 8.14352 8.35684 8.59217 8.71312 9.01099 9.84480 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002190 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.320000 B =12782.217942 C =13760.586814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.079 3.921 5 H 0.091 0.909 6 C -0.178 4.178 7 C 0.104 3.896 8 O -0.536 6.536 9 C 0.112 3.888 10 N -0.743 5.743 11 C 0.573 3.427 12 O -0.573 6.573 13 C -0.285 4.285 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.441 4.441 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.771 5.771 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.238 4.238 26 C -0.021 4.021 27 C -0.059 4.059 28 C -0.129 4.129 29 C -0.123 4.123 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.380 0.620 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.393 0.607 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.287 0.713 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -9.445 12.696 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.289 6.289 4 C 0.021 3.979 5 H 0.108 0.892 6 C -0.216 4.216 7 C 0.063 3.937 8 O -0.343 6.343 9 C -0.013 4.013 10 N -0.397 5.397 11 C 0.368 3.632 12 O -0.454 6.454 13 C -0.290 4.290 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.394 5.394 21 Si 0.738 3.262 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.258 4.258 26 C -0.041 4.041 27 C -0.060 4.060 28 C -0.186 4.186 29 C -0.181 4.181 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.229 0.771 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.228 0.772 41 H 0.105 0.895 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.662 -8.913 13.455 19.343 hybrid contribution 1.188 -0.851 -1.384 2.013 sum -9.474 -9.764 12.071 18.188 Atomic orbital electron populations 1.21740 0.93859 1.02112 1.03120 1.22496 0.95519 0.84215 0.99906 1.87943 1.20519 1.25915 1.94509 1.23725 0.80884 0.97436 0.95883 0.89160 1.24174 0.99099 1.00710 0.97606 1.22230 0.84799 0.90321 0.96399 1.86456 1.26219 1.74020 1.47555 1.21698 0.95563 0.95218 0.88779 1.45833 1.52308 1.09651 1.31941 1.18583 0.79412 0.82324 0.82841 1.90642 1.57489 1.30778 1.66522 1.18868 1.12641 0.94687 1.02783 1.20435 0.97136 0.94396 0.96223 1.20968 1.03273 0.98948 0.96512 1.17789 0.87998 0.91178 0.90539 1.19828 1.20296 0.99576 1.07189 0.89709 1.26110 0.96310 0.94717 0.97595 1.69736 1.28756 1.08366 1.32556 0.86252 0.81488 0.78686 0.79809 1.18448 1.20044 1.18631 1.20717 1.06113 0.97386 1.01586 1.20363 0.94357 0.95792 0.93546 1.22200 0.93439 0.95870 0.94475 1.21589 1.00163 1.02414 0.94448 1.21508 0.97523 0.95972 1.03049 0.91817 0.91285 0.91916 0.93471 0.93555 0.88165 0.90487 0.77093 0.90494 0.91223 0.77227 0.89528 0.86193 0.90150 0.88365 0.88097 0.92045 0.92697 0.91977 0.91588 0.91637 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.46 6.50 37.16 0.24 0.70 16 3 O -0.37 -3.95 9.44 -35.23 -0.33 -4.28 16 4 C 0.08 0.82 3.66 -25.91 -0.09 0.72 16 5 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 6 C -0.18 -1.95 6.95 -25.92 -0.18 -2.13 16 7 C 0.10 1.19 1.19 -89.81 -0.11 1.08 16 8 O -0.54 -6.05 12.41 -35.23 -0.44 -6.48 16 9 C 0.11 1.56 4.24 -4.04 -0.02 1.54 16 10 N -0.74 -11.79 5.26 -61.31 -0.32 -12.11 16 11 C 0.57 11.91 7.76 -12.42 -0.10 11.81 16 12 O -0.57 -13.49 16.32 5.29 0.09 -13.40 16 13 C -0.29 -6.37 5.89 -104.73 -0.62 -6.99 16 14 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 15 C -0.18 -4.25 8.63 -39.27 -0.34 -4.59 16 16 C 0.13 3.21 5.58 -106.80 -0.60 2.62 16 17 C -0.44 -10.80 9.04 -37.75 -0.34 -11.15 16 18 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 19 C 0.07 1.70 5.14 -17.30 -0.09 1.61 16 20 N -0.77 -18.14 10.95 55.56 0.61 -17.53 16 21 Si 0.91 17.00 29.60 -169.99 -5.03 11.97 16 22 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 23 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 25 C -0.24 -5.70 9.73 -39.27 -0.38 -6.09 16 26 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 27 C -0.06 -0.62 1.27 -153.70 -0.20 -0.82 16 28 C -0.13 -1.28 8.65 37.16 0.32 -0.96 16 29 C -0.12 -1.28 7.18 37.16 0.27 -1.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 1.18 7.57 -51.93 -0.39 0.79 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.38 3.61 7.70 45.56 0.35 3.97 16 38 H 0.08 1.12 6.87 -51.93 -0.36 0.76 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.39 5.41 5.42 -40.82 -0.22 5.18 16 41 H 0.09 1.53 6.37 -52.48 -0.33 1.20 16 42 H 0.12 2.90 6.16 -52.49 -0.32 2.57 16 43 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 44 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 45 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 46 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.63 7.64 -51.93 -0.40 0.23 16 49 H 0.07 0.72 7.07 -51.93 -0.37 0.36 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.06 0.65 7.31 -51.93 -0.38 0.27 16 LS Contribution 409.11 15.07 6.17 6.17 Total: -1.00 -28.57 409.11 -9.28 -37.85 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -7.42 Total: 14.74 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -2.60 Total: -16.91 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 0.29 Total: -29.64 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.68 Total: -24.17 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -28.57 -9.28 -37.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276690574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.956 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds