Wall clock time and date at job start Wed Apr 1 2020 05:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.46962 * 2 1 4 4 C 1.42902 * 113.99695 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.85329 * 341.19455 * 4 3 2 6 6 C 1.53787 * 113.61202 * 112.50747 * 4 3 2 7 7 C 1.53777 * 87.08031 * 139.97635 * 6 4 3 8 8 O 1.42902 * 113.61470 * 89.11771 * 7 6 4 9 9 C 1.53004 * 113.69135 * 220.00201 * 7 6 4 10 10 N 1.46497 * 109.47006 * 284.06863 * 9 7 6 11 11 C 1.34782 * 119.99664 * 179.97438 * 10 9 7 12 12 O 1.21589 * 120.00001 * 0.02562 * 11 10 9 13 13 C 1.47646 * 120.00157 * 179.97438 * 11 10 9 14 14 C 1.40021 * 119.89148 * 359.72763 * 13 11 10 15 15 C 1.36312 * 120.10319 * 179.71428 * 14 13 11 16 16 C 1.40890 * 119.89342 * 0.57982 * 15 14 13 17 17 C 1.41106 * 120.10505 * 179.71273 * 16 15 14 18 18 H 1.07995 * 119.99982 * 204.61817 * 17 16 15 19 19 C 1.40233 * 119.99868 * 24.62317 * 17 16 15 20 20 N 1.30651 * 119.99720 * 17.88012 * 19 17 16 21 21 Si 1.86795 * 119.99992 * 197.87767 * 19 17 16 22 22 H 1.48505 * 109.47019 * 60.00372 * 21 19 17 23 23 H 1.48496 * 109.46964 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47362 * 300.00127 * 21 19 17 25 25 C 1.40890 * 119.79072 * 359.69719 * 16 15 14 26 26 C 1.36317 * 119.89400 * 359.97438 * 25 16 15 27 27 C 1.53772 * 87.08474 * 334.56439 * 7 6 4 28 28 C 1.52999 * 113.61800 * 139.97889 * 27 7 6 29 29 C 1.52997 * 113.61643 * 270.88482 * 27 7 6 30 30 H 1.08994 * 109.47189 * 60.00183 * 1 2 3 31 31 H 1.09006 * 109.46625 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46942 * 299.99755 * 1 2 3 33 33 H 1.09006 * 109.47477 * 240.00213 * 2 1 3 34 34 H 1.09002 * 109.47454 * 120.00017 * 2 1 3 35 35 H 1.08997 * 113.61486 * 25.42570 * 6 4 3 36 36 H 1.09001 * 113.61213 * 254.52488 * 6 4 3 37 37 H 0.96698 * 114.00395 * 82.49897 * 8 7 6 38 38 H 1.09004 * 109.46662 * 44.06682 * 9 7 6 39 39 H 1.08996 * 109.46836 * 164.06534 * 9 7 6 40 40 H 0.96999 * 120.00462 * 359.97438 * 10 9 7 41 41 H 1.08003 * 119.94488 * 0.02562 * 14 13 11 42 42 H 1.07999 * 120.05234 * 180.25071 * 15 14 13 43 43 H 0.96998 * 119.99749 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.05092 * 179.97438 * 25 16 15 45 45 H 1.07993 * 119.94942 * 180.02562 * 26 25 16 46 46 H 1.09008 * 109.46634 * 60.00219 * 28 27 7 47 47 H 1.08998 * 109.47465 * 179.97438 * 28 27 7 48 48 H 1.08996 * 109.47376 * 300.00305 * 28 27 7 49 49 H 1.09002 * 109.47001 * 59.99914 * 29 27 7 50 50 H 1.09004 * 109.47499 * 179.97438 * 29 27 7 51 51 H 1.08996 * 109.47164 * 299.99884 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9280 0.5456 0.3229 6 6 4.0018 2.0467 -1.3025 7 6 4.9895 2.8315 -0.4233 8 8 6.2013 2.1244 -0.1522 9 6 5.2322 4.2650 -0.9002 10 7 6.1140 4.2477 -2.0699 11 6 6.4671 5.4045 -2.6647 12 8 6.0542 6.4623 -2.2301 13 6 7.3563 5.3872 -3.8432 14 6 7.8360 4.1682 -4.3377 15 6 8.6524 4.1469 -5.4291 16 6 9.0234 5.3548 -6.0522 17 6 9.8732 5.3383 -7.1785 18 1 10.4708 6.2057 -7.4168 19 6 9.9417 4.1955 -7.9885 20 7 8.9969 3.2951 -7.9290 21 14 11.3837 3.9608 -9.1524 22 1 12.6477 3.9248 -8.3737 23 1 11.2211 2.6826 -9.8905 24 1 11.4291 5.0882 -10.1180 25 6 8.5428 6.5792 -5.5474 26 6 7.7214 6.5901 -4.4596 27 6 3.9489 2.7252 0.7039 28 6 4.5609 2.4535 2.0795 29 6 2.9404 3.8756 0.7175 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2978 2.6807 -1.8413 36 1 4.4806 1.3053 -1.9423 37 1 6.8598 2.1876 -0.8575 38 1 4.2809 4.7243 -1.1690 39 1 5.7001 4.8395 -0.1008 40 1 6.4437 3.4038 -2.4164 41 1 7.5545 3.2431 -3.8567 42 1 9.0187 3.2059 -5.8122 43 1 9.0445 2.5045 -8.4889 44 1 8.8249 7.5077 -6.0216 45 1 7.3522 7.5281 -4.0722 46 1 5.2417 3.2638 2.3408 47 1 3.7675 2.3916 2.8244 48 1 5.1096 1.5120 2.0536 49 1 2.3963 3.8931 -0.2269 50 1 2.2377 3.7332 1.5386 51 1 3.4682 4.8200 0.8502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276690574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:49 Heat of formation + Delta-G solvation = -120.964496 kcal Electronic energy + Delta-G solvation = -30640.325165 eV Core-core repulsion = 26503.940220 eV Total energy + Delta-G solvation = -4136.384945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.96558 -40.59971 -38.92434 -38.26293 -36.02965 -35.67138 -35.27589 -32.21019 -32.03584 -31.31515 -31.20708 -29.34174 -28.16791 -27.21017 -24.14301 -23.85470 -23.48060 -23.03715 -22.64489 -21.38136 -19.66293 -19.37674 -18.99339 -17.68183 -17.43141 -17.07008 -16.94798 -16.51431 -16.44488 -16.01942 -15.76652 -15.73622 -15.11553 -14.96471 -14.68234 -14.66376 -14.42407 -14.18237 -13.87066 -13.74363 -13.60966 -13.43754 -13.34361 -13.20755 -13.16881 -12.96500 -12.86864 -12.85356 -12.65176 -12.49431 -12.36284 -12.21973 -11.86399 -11.79652 -11.73764 -11.37476 -11.22773 -11.10574 -10.78859 -10.68986 -10.28833 -10.13902 -9.57516 -9.41213 -8.79793 -6.48357 0.43516 1.15285 1.39111 1.44433 1.52115 2.11056 2.17573 2.22596 2.71270 2.77513 2.85722 3.31480 3.53441 3.61497 3.68910 3.69343 4.05586 4.18204 4.22764 4.23810 4.30713 4.31938 4.41685 4.44433 4.46826 4.52115 4.64875 4.73189 4.77723 4.83165 4.88873 4.92241 4.93710 4.98800 5.02769 5.05454 5.09686 5.14532 5.15551 5.28738 5.29760 5.34662 5.44592 5.50165 5.58642 5.81380 5.93424 5.99112 6.22840 6.33816 6.53345 6.56174 6.65627 6.76996 6.88776 7.39533 8.15114 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002190 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.320000 B =12782.217942 C =13760.586814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.385 6.385 4 C 0.085 3.915 5 H 0.099 0.901 6 C -0.178 4.178 7 C 0.112 3.888 8 O -0.538 6.538 9 C 0.114 3.886 10 N -0.722 5.722 11 C 0.574 3.426 12 O -0.604 6.604 13 C -0.293 4.293 14 C -0.052 4.052 15 C -0.197 4.197 16 C 0.100 3.900 17 C -0.473 4.473 18 H 0.085 0.915 19 C 0.039 3.961 20 N -0.796 5.796 21 Si 0.986 3.014 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.260 1.260 25 C -0.253 4.253 26 C -0.034 4.034 27 C -0.061 4.061 28 C -0.125 4.125 29 C -0.121 4.121 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.388 0.612 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.405 0.595 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.297 0.703 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 -11.557 13.144 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.304 6.304 4 C 0.027 3.973 5 H 0.116 0.884 6 C -0.216 4.216 7 C 0.070 3.930 8 O -0.346 6.346 9 C -0.010 4.010 10 N -0.375 5.375 11 C 0.368 3.632 12 O -0.488 6.488 13 C -0.298 4.298 14 C -0.071 4.071 15 C -0.217 4.217 16 C 0.097 3.903 17 C -0.500 4.500 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.420 5.420 21 Si 0.806 3.194 22 H -0.182 1.182 23 H -0.188 1.188 24 H -0.184 1.184 25 C -0.273 4.273 26 C -0.053 4.053 27 C -0.062 4.062 28 C -0.183 4.183 29 C -0.178 4.178 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.238 0.762 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.243 0.757 41 H 0.144 0.856 42 H 0.133 0.867 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.762 -11.063 13.920 20.784 hybrid contribution 1.120 -0.203 -1.454 1.847 sum -9.642 -11.266 12.466 19.372 Atomic orbital electron populations 1.21752 0.93026 1.03217 1.02615 1.22690 0.96265 0.83281 1.00590 1.87930 1.20481 1.27445 1.94530 1.23644 0.81067 0.97448 0.95123 0.88356 1.24156 0.98782 1.00659 0.97990 1.22128 0.85181 0.88599 0.97126 1.86461 1.26307 1.73698 1.48094 1.21793 0.94554 0.97155 0.87466 1.45601 1.51428 1.08774 1.31736 1.18396 0.79176 0.83078 0.82594 1.90627 1.58642 1.32244 1.67321 1.19140 1.12671 0.94684 1.03267 1.20714 0.95514 0.95641 0.95198 1.21018 1.04630 0.98371 0.97631 1.18150 0.88785 0.91961 0.91384 1.20088 1.21106 1.00799 1.07966 0.89732 1.26910 0.98580 0.93811 0.98781 1.69752 1.29991 1.08861 1.33348 0.85171 0.77714 0.78962 0.77527 1.18230 1.18763 1.18385 1.20844 1.06707 0.97559 1.02148 1.20513 0.94524 0.96555 0.93712 1.22245 0.93093 0.96160 0.94654 1.21560 1.00361 1.02108 0.94229 1.21479 0.97586 0.95813 1.02950 0.92617 0.89406 0.92098 0.93148 0.92467 0.89142 0.89708 0.76184 0.91026 0.92090 0.75743 0.85613 0.86701 0.89143 0.87925 0.88061 0.92604 0.91568 0.92005 0.92424 0.90761 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.71 6.50 71.98 0.47 1.18 16 3 O -0.38 -7.58 9.44 -148.98 -1.41 -8.98 16 4 C 0.09 1.60 3.66 31.12 0.11 1.72 16 5 H 0.10 1.70 7.69 -2.39 -0.02 1.68 16 6 C -0.18 -3.59 6.95 31.12 0.22 -3.37 16 7 C 0.11 2.35 1.19 -10.27 -0.01 2.34 16 8 O -0.54 -10.91 12.41 -148.98 -1.85 -12.76 16 9 C 0.11 3.06 4.24 86.38 0.37 3.43 16 10 N -0.72 -21.91 5.26 -466.14 -2.45 -24.37 16 11 C 0.57 23.52 7.76 86.73 0.67 24.19 16 12 O -0.60 -28.54 16.32 -4.00 -0.07 -28.60 16 13 C -0.29 -13.03 5.89 -19.93 -0.12 -13.15 16 14 C -0.05 -2.17 9.47 22.25 0.21 -1.96 16 15 C -0.20 -9.46 8.63 22.47 0.19 -9.27 16 16 C 0.10 5.14 5.58 -21.28 -0.12 5.02 16 17 C -0.47 -23.53 9.04 23.46 0.21 -23.32 16 18 H 0.08 4.05 7.91 -2.91 -0.02 4.02 16 19 C 0.04 1.75 5.14 85.35 0.44 2.19 16 20 N -0.80 -37.26 10.95 21.87 0.24 -37.02 16 21 Si 0.99 34.20 29.60 68.60 2.03 36.23 16 22 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 23 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 24 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 25 C -0.25 -12.45 9.73 22.47 0.22 -12.24 16 26 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 27 C -0.06 -1.18 1.27 -51.66 -0.07 -1.25 16 28 C -0.13 -2.25 8.65 71.98 0.62 -1.63 16 29 C -0.12 -2.39 7.18 71.98 0.52 -1.87 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 2.03 7.57 -2.39 -0.02 2.01 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.39 6.38 7.70 -74.06 -0.57 5.81 16 38 H 0.07 2.05 6.87 -2.38 -0.02 2.03 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.41 10.22 5.42 -92.71 -0.50 9.72 16 41 H 0.13 4.13 6.37 -2.91 -0.02 4.12 16 42 H 0.12 5.57 6.16 -2.91 -0.02 5.55 16 43 H 0.30 12.37 8.29 -92.71 -0.77 11.60 16 44 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 45 H 0.10 4.71 7.63 -2.91 -0.02 4.69 16 46 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 1.11 7.64 -2.39 -0.02 1.10 16 49 H 0.06 1.23 7.07 -2.39 -0.02 1.21 16 50 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.06 1.19 7.31 -2.39 -0.02 1.17 16 Total: -1.00 -61.60 409.11 1.26 -60.34 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -0.13 Total: 45.66 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 4.89 Total: -30.50 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -2.21 Total: -61.39 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -3.32 Total: -50.35 kcal Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal Total: -61.60 1.26 -60.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276690574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.620 kcal (2) G-P(sol) polarization free energy of solvation -61.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds