Wall clock time and date at job start Wed Apr 1 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47319 * 2 1 4 4 C 1.42908 * 114.00180 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.84435 * 341.19566 * 4 3 2 6 6 C 1.53780 * 113.69058 * 112.46651 * 4 3 2 7 7 C 1.53780 * 87.07916 * 139.99112 * 6 4 3 8 8 O 1.42899 * 113.69139 * 220.00713 * 7 6 4 9 9 C 1.53001 * 113.60959 * 89.11543 * 7 6 4 10 10 N 1.46505 * 109.47083 * 82.50260 * 9 7 6 11 11 C 1.34778 * 119.99799 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00373 * 0.02562 * 11 10 9 13 13 C 1.47642 * 119.99807 * 180.02562 * 11 10 9 14 14 C 1.40005 * 119.89598 * 180.02562 * 13 11 10 15 15 C 1.36319 * 120.11009 * 180.02562 * 14 13 11 16 16 C 1.40890 * 119.88961 * 359.97438 * 15 14 13 17 17 C 1.41104 * 120.10719 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00353 * 335.48628 * 17 16 15 19 19 C 1.40225 * 120.00163 * 155.47647 * 17 16 15 20 20 N 1.30647 * 120.00054 * 342.27865 * 19 17 16 21 21 Si 1.86798 * 120.00078 * 162.55941 * 19 17 16 22 22 H 1.48503 * 109.47426 * 179.72509 * 21 19 17 23 23 H 1.48504 * 109.47158 * 299.72547 * 21 19 17 24 24 H 1.48505 * 109.47254 * 59.72277 * 21 19 17 25 25 C 1.40890 * 119.79145 * 0.28212 * 16 15 14 26 26 C 1.36318 * 119.89248 * 359.43974 * 25 16 15 27 27 C 1.53774 * 113.61352 * 210.00346 * 4 3 2 28 28 C 1.53004 * 113.61496 * 105.38764 * 27 4 3 29 29 C 1.52998 * 113.61970 * 334.48458 * 27 4 3 30 30 H 1.09001 * 109.46767 * 59.99950 * 1 2 3 31 31 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.46795 * 299.99938 * 1 2 3 33 33 H 1.09007 * 109.46888 * 240.00067 * 2 1 3 34 34 H 1.08996 * 109.47273 * 120.00804 * 2 1 3 35 35 H 1.08997 * 113.61058 * 25.44710 * 6 4 3 36 36 H 1.08994 * 113.61183 * 254.54519 * 6 4 3 37 37 H 0.96706 * 113.99838 * 279.06611 * 8 7 6 38 38 H 1.08997 * 109.47834 * 322.50352 * 9 7 6 39 39 H 1.08998 * 109.47161 * 202.49900 * 9 7 6 40 40 H 0.96999 * 119.99746 * 359.97438 * 10 9 7 41 41 H 1.07995 * 119.94986 * 0.03799 * 14 13 11 42 42 H 1.07998 * 120.05771 * 179.97438 * 15 14 13 43 43 H 0.97003 * 120.00056 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.05149 * 179.69301 * 25 16 15 45 45 H 1.08004 * 119.94802 * 180.27689 * 26 25 16 46 46 H 1.08994 * 109.47537 * 157.49589 * 28 27 4 47 47 H 1.09008 * 109.47141 * 277.49346 * 28 27 4 48 48 H 1.08997 * 109.47004 * 37.49297 * 28 27 4 49 49 H 1.09002 * 109.46590 * 322.50127 * 29 27 4 50 50 H 1.08994 * 109.47377 * 82.50063 * 29 27 4 51 51 H 1.08994 * 109.47236 * 202.50770 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.9281 0.5455 0.3229 6 6 4.0039 2.0455 -1.3021 7 6 4.9912 2.8301 -0.4220 8 8 5.2192 4.1685 -0.8677 9 6 6.2877 2.0721 -0.1298 10 7 7.2114 2.2324 -1.2556 11 6 8.4254 1.6480 -1.2196 12 8 8.7538 0.9875 -0.2532 13 6 9.3565 1.8100 -2.3539 14 6 10.6168 1.2016 -2.3146 15 6 11.4801 1.3487 -3.3592 16 6 11.1020 2.1141 -4.4801 17 6 11.9918 2.2689 -5.5642 18 1 13.0556 2.1654 -5.4088 19 6 11.4950 2.5569 -6.8434 20 7 10.2353 2.3453 -7.1179 21 14 12.6359 3.2358 -8.1575 22 1 11.8732 3.4478 -9.4140 23 1 13.2045 4.5290 -7.6995 24 1 13.7372 2.2705 -8.4038 25 6 9.8348 2.7289 -4.5127 26 6 8.9761 2.5713 -3.4657 27 6 3.9490 2.7249 0.7040 28 6 4.5593 2.4534 2.0805 29 6 2.9414 3.8762 0.7159 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3010 2.6799 -1.8420 36 1 4.4829 1.3035 -1.9408 37 1 5.8565 4.2387 -1.5917 38 1 6.0664 1.0141 0.0107 39 1 6.7456 2.4708 0.7754 40 1 6.9492 2.7590 -2.0268 41 1 10.9055 0.6145 -1.4553 42 1 12.4523 0.8793 -3.3278 43 1 9.8916 2.5449 -8.0027 44 1 9.5426 3.3206 -5.3676 45 1 8.0027 3.0386 -3.4918 46 1 5.2403 3.2632 2.3422 47 1 3.7649 2.3920 2.8244 48 1 5.1073 1.5116 2.0556 49 1 2.3986 3.8936 -0.2292 50 1 2.2379 3.7349 1.5364 51 1 3.4698 4.8202 0.8488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276690580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:59 Heat of formation + Delta-G solvation = -103.712237 kcal Electronic energy + Delta-G solvation = -30676.098532 eV Core-core repulsion = 26540.461701 eV Total energy + Delta-G solvation = -4135.636831 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.08631 -39.02892 -37.57317 -37.04951 -35.18353 -33.92604 -33.85432 -31.39719 -30.75274 -30.22125 -29.49918 -28.25236 -26.81800 -25.51057 -23.43078 -22.85594 -22.66668 -21.69579 -20.95982 -19.83001 -18.62159 -17.81919 -17.55182 -16.87141 -16.17572 -15.84657 -15.67534 -15.37645 -15.27554 -14.86400 -14.49874 -14.18059 -14.03521 -13.75040 -13.56827 -13.27761 -13.22396 -12.86767 -12.74081 -12.66523 -12.55188 -12.38195 -12.17826 -12.14659 -12.02150 -11.93121 -11.65912 -11.48195 -11.40580 -11.30185 -11.09628 -11.03180 -10.76878 -10.69801 -10.49818 -10.11546 -9.87298 -9.60881 -9.54160 -9.40155 -9.06555 -8.74618 -7.77841 -7.60022 -7.08418 -4.65334 2.17145 2.89311 2.91580 2.95396 2.98564 3.32941 3.53301 3.70073 3.79445 3.98159 4.15406 4.35160 4.43334 4.51779 4.60170 4.78220 4.82071 4.98593 5.04810 5.10413 5.20314 5.36378 5.44985 5.51436 5.56578 5.57662 5.61504 5.62399 5.68501 5.78574 5.79754 5.87223 5.90153 5.92924 5.96948 6.04249 6.18678 6.26466 6.33578 6.71354 6.76005 6.78048 6.98292 7.03402 7.07828 7.37731 7.47498 7.58147 7.72079 7.80648 8.01672 8.10395 8.34459 8.57973 8.69927 8.96823 9.83489 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016171 B = 0.002146 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.048266 B =13045.491666 C =13597.550632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.072 3.928 5 H 0.090 0.910 6 C -0.179 4.179 7 C 0.103 3.897 8 O -0.538 6.538 9 C 0.117 3.883 10 N -0.742 5.742 11 C 0.574 3.426 12 O -0.573 6.573 13 C -0.286 4.286 14 C -0.021 4.021 15 C -0.239 4.239 16 C 0.129 3.871 17 C -0.441 4.441 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.771 5.771 21 Si 0.914 3.086 22 H -0.275 1.275 23 H -0.260 1.260 24 H -0.262 1.262 25 C -0.177 4.177 26 C -0.062 4.062 27 C -0.057 4.057 28 C -0.144 4.144 29 C -0.108 4.108 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.376 0.624 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.393 0.607 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.288 0.712 44 H 0.121 0.879 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 0.362 8.507 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.285 6.285 4 C 0.014 3.986 5 H 0.108 0.892 6 C -0.217 4.217 7 C 0.061 3.939 8 O -0.344 6.344 9 C -0.008 4.008 10 N -0.398 5.398 11 C 0.369 3.631 12 O -0.455 6.455 13 C -0.291 4.291 14 C -0.040 4.040 15 C -0.258 4.258 16 C 0.125 3.875 17 C -0.468 4.468 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.394 5.394 21 Si 0.738 3.262 22 H -0.200 1.200 23 H -0.184 1.184 24 H -0.186 1.186 25 C -0.197 4.197 26 C -0.082 4.082 27 C -0.057 4.057 28 C -0.201 4.201 29 C -0.165 4.165 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.224 0.776 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.229 0.771 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.138 0.862 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.094 0.182 9.466 18.672 hybrid contribution 0.836 0.037 -1.609 1.814 sum -15.259 0.219 7.856 17.164 Atomic orbital electron populations 1.21734 0.93801 1.02168 1.03059 1.22529 0.95556 0.84116 1.00114 1.87937 1.20022 1.25990 1.94536 1.23590 0.81484 0.97280 0.96276 0.89185 1.24196 0.99119 1.00571 0.97810 1.22597 0.92386 0.82863 0.96007 1.86543 1.66150 1.25325 1.56384 1.21572 0.88270 0.99916 0.91009 1.45828 1.16644 1.56212 1.21079 1.18580 0.80283 0.77251 0.86937 1.90638 1.76707 1.42245 1.35864 1.18849 0.97340 1.15879 0.97010 1.20357 0.92118 0.95073 0.96479 1.20718 1.00454 1.07273 0.97374 1.17792 0.91954 0.86481 0.91253 1.19834 0.95384 1.39542 0.92047 0.89695 1.26111 0.95668 0.92645 1.00318 1.69731 1.15073 1.31643 1.22942 0.86250 0.80644 0.80622 0.78710 1.20023 1.18432 1.18630 1.20978 0.95826 1.04293 0.98571 1.20437 0.97162 0.97019 0.93542 1.22220 0.94147 0.95676 0.93691 1.21851 1.00907 1.02183 0.95197 1.21214 0.96933 0.96154 1.02171 0.91872 0.91212 0.91915 0.93344 0.93387 0.88108 0.90513 0.77573 0.91076 0.90612 0.77136 0.88107 0.88353 0.90118 0.86163 0.89500 0.91589 0.91959 0.92072 0.92039 0.92559 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.67 16 2 C 0.05 0.45 6.50 37.16 0.24 0.70 16 3 O -0.37 -3.91 9.45 -35.23 -0.33 -4.24 16 4 C 0.07 0.75 3.37 -25.92 -0.09 0.67 16 5 H 0.09 0.89 7.20 -51.93 -0.37 0.52 16 6 C -0.18 -1.98 6.96 -25.92 -0.18 -2.16 16 7 C 0.10 1.19 1.41 -89.81 -0.13 1.07 16 8 O -0.54 -6.48 12.49 -35.23 -0.44 -6.92 16 9 C 0.12 1.60 4.00 -4.04 -0.02 1.58 16 10 N -0.74 -11.69 5.30 -61.31 -0.32 -12.02 16 11 C 0.57 11.79 7.76 -12.42 -0.10 11.69 16 12 O -0.57 -13.28 16.32 5.30 0.09 -13.20 16 13 C -0.29 -6.34 5.89 -104.73 -0.62 -6.96 16 14 C -0.02 -0.49 9.52 -39.61 -0.38 -0.86 16 15 C -0.24 -5.67 9.73 -39.27 -0.38 -6.05 16 16 C 0.13 3.21 5.57 -106.80 -0.60 2.61 16 17 C -0.44 -10.74 9.05 -37.75 -0.34 -11.08 16 18 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 19 C 0.07 1.69 5.14 -17.31 -0.09 1.60 16 20 N -0.77 -18.07 10.95 55.56 0.61 -17.47 16 21 Si 0.91 16.95 29.59 -169.99 -5.03 11.92 16 22 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 24 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 25 C -0.18 -4.22 8.63 -39.27 -0.34 -4.56 16 26 C -0.06 -1.33 9.47 -39.61 -0.38 -1.71 16 27 C -0.06 -0.61 1.30 -153.70 -0.20 -0.81 16 28 C -0.14 -1.42 8.00 37.16 0.30 -1.12 16 29 C -0.11 -1.15 7.92 37.16 0.29 -0.85 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 1.14 7.65 -51.93 -0.40 0.74 16 36 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.38 3.82 7.33 45.56 0.33 4.16 16 38 H 0.07 0.99 7.26 -51.93 -0.38 0.61 16 39 H 0.08 1.11 7.34 -51.93 -0.38 0.72 16 40 H 0.39 5.40 5.03 -40.82 -0.21 5.19 16 41 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 42 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 43 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 44 H 0.12 2.90 6.16 -52.48 -0.32 2.57 16 45 H 0.09 1.53 6.37 -52.48 -0.33 1.20 16 46 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 47 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 48 H 0.06 0.59 7.14 -51.93 -0.37 0.22 16 49 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 LS Contribution 407.48 15.07 6.14 6.14 Total: -1.00 -28.47 407.48 -9.28 -37.75 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -7.38 Total: 14.94 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.61 Total: -16.92 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.28 Total: -29.48 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.69 Total: -24.36 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -28.47 -9.28 -37.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276690580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.960 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds