Wall clock time and date at job start Wed Apr 1 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47319 * 2 1 4 4 C 1.42908 * 114.00180 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.84435 * 341.19566 * 4 3 2 6 6 C 1.53780 * 113.69058 * 112.46651 * 4 3 2 7 7 C 1.53780 * 87.07916 * 139.99112 * 6 4 3 8 8 O 1.42899 * 113.69139 * 220.00713 * 7 6 4 9 9 C 1.53001 * 113.60959 * 89.11543 * 7 6 4 10 10 N 1.46505 * 109.47083 * 82.50260 * 9 7 6 11 11 C 1.34778 * 119.99799 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00373 * 0.02562 * 11 10 9 13 13 C 1.47642 * 119.99807 * 180.02562 * 11 10 9 14 14 C 1.40005 * 119.89598 * 180.02562 * 13 11 10 15 15 C 1.36319 * 120.11009 * 180.02562 * 14 13 11 16 16 C 1.40890 * 119.88961 * 359.97438 * 15 14 13 17 17 C 1.41104 * 120.10719 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00353 * 335.48628 * 17 16 15 19 19 C 1.40225 * 120.00163 * 155.47647 * 17 16 15 20 20 N 1.30647 * 120.00054 * 342.27865 * 19 17 16 21 21 Si 1.86798 * 120.00078 * 162.55941 * 19 17 16 22 22 H 1.48503 * 109.47426 * 179.72509 * 21 19 17 23 23 H 1.48504 * 109.47158 * 299.72547 * 21 19 17 24 24 H 1.48505 * 109.47254 * 59.72277 * 21 19 17 25 25 C 1.40890 * 119.79145 * 0.28212 * 16 15 14 26 26 C 1.36318 * 119.89248 * 359.43974 * 25 16 15 27 27 C 1.53774 * 113.61352 * 210.00346 * 4 3 2 28 28 C 1.53004 * 113.61496 * 105.38764 * 27 4 3 29 29 C 1.52998 * 113.61970 * 334.48458 * 27 4 3 30 30 H 1.09001 * 109.46767 * 59.99950 * 1 2 3 31 31 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.46795 * 299.99938 * 1 2 3 33 33 H 1.09007 * 109.46888 * 240.00067 * 2 1 3 34 34 H 1.08996 * 109.47273 * 120.00804 * 2 1 3 35 35 H 1.08997 * 113.61058 * 25.44710 * 6 4 3 36 36 H 1.08994 * 113.61183 * 254.54519 * 6 4 3 37 37 H 0.96706 * 113.99838 * 279.06611 * 8 7 6 38 38 H 1.08997 * 109.47834 * 322.50352 * 9 7 6 39 39 H 1.08998 * 109.47161 * 202.49900 * 9 7 6 40 40 H 0.96999 * 119.99746 * 359.97438 * 10 9 7 41 41 H 1.07995 * 119.94986 * 0.03799 * 14 13 11 42 42 H 1.07998 * 120.05771 * 179.97438 * 15 14 13 43 43 H 0.97003 * 120.00056 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.05149 * 179.69301 * 25 16 15 45 45 H 1.08004 * 119.94802 * 180.27689 * 26 25 16 46 46 H 1.08994 * 109.47537 * 157.49589 * 28 27 4 47 47 H 1.09008 * 109.47141 * 277.49346 * 28 27 4 48 48 H 1.08997 * 109.47004 * 37.49297 * 28 27 4 49 49 H 1.09002 * 109.46590 * 322.50127 * 29 27 4 50 50 H 1.08994 * 109.47377 * 82.50063 * 29 27 4 51 51 H 1.08994 * 109.47236 * 202.50770 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.9281 0.5455 0.3229 6 6 4.0039 2.0455 -1.3021 7 6 4.9912 2.8301 -0.4220 8 8 5.2192 4.1685 -0.8677 9 6 6.2877 2.0721 -0.1298 10 7 7.2114 2.2324 -1.2556 11 6 8.4254 1.6480 -1.2196 12 8 8.7538 0.9875 -0.2532 13 6 9.3565 1.8100 -2.3539 14 6 10.6168 1.2016 -2.3146 15 6 11.4801 1.3487 -3.3592 16 6 11.1020 2.1141 -4.4801 17 6 11.9918 2.2689 -5.5642 18 1 13.0556 2.1654 -5.4088 19 6 11.4950 2.5569 -6.8434 20 7 10.2353 2.3453 -7.1179 21 14 12.6359 3.2358 -8.1575 22 1 11.8732 3.4478 -9.4140 23 1 13.2045 4.5290 -7.6995 24 1 13.7372 2.2705 -8.4038 25 6 9.8348 2.7289 -4.5127 26 6 8.9761 2.5713 -3.4657 27 6 3.9490 2.7249 0.7040 28 6 4.5593 2.4534 2.0805 29 6 2.9414 3.8762 0.7159 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3010 2.6799 -1.8420 36 1 4.4829 1.3035 -1.9408 37 1 5.8565 4.2387 -1.5917 38 1 6.0664 1.0141 0.0107 39 1 6.7456 2.4708 0.7754 40 1 6.9492 2.7590 -2.0268 41 1 10.9055 0.6145 -1.4553 42 1 12.4523 0.8793 -3.3278 43 1 9.8916 2.5449 -8.0027 44 1 9.5426 3.3206 -5.3676 45 1 8.0027 3.0386 -3.4918 46 1 5.2403 3.2632 2.3422 47 1 3.7649 2.3920 2.8244 48 1 5.1073 1.5116 2.0556 49 1 2.3986 3.8936 -0.2292 50 1 2.2379 3.7349 1.5364 51 1 3.4698 4.8202 0.8488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276690580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:58 Heat of formation + Delta-G solvation = -120.693054 kcal Electronic energy + Delta-G solvation = -30676.834875 eV Core-core repulsion = 26540.461701 eV Total energy + Delta-G solvation = -4136.373175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.03772 -40.60188 -38.92942 -38.28417 -36.11899 -35.67375 -35.24682 -32.21923 -32.06133 -31.36292 -31.27199 -29.35370 -28.03600 -26.96736 -24.32947 -23.86552 -23.53378 -23.11195 -22.71129 -21.40025 -19.51268 -19.38360 -19.11087 -17.84303 -17.40476 -17.00604 -16.96059 -16.49661 -16.33419 -16.12096 -15.74882 -15.65696 -15.14827 -15.00937 -14.82745 -14.71499 -14.44592 -14.15025 -13.86996 -13.73616 -13.65939 -13.40199 -13.35010 -13.19647 -13.19031 -12.98303 -12.86808 -12.84984 -12.64291 -12.47192 -12.36644 -12.18049 -11.84387 -11.79906 -11.58894 -11.46155 -11.36732 -11.12120 -10.80040 -10.74061 -10.32376 -10.16444 -9.57720 -9.41610 -8.79982 -6.48680 0.42941 1.15175 1.39027 1.44207 1.51986 2.10347 2.17217 2.18508 2.58827 2.77479 3.11237 3.25879 3.40751 3.53050 3.69067 3.70234 3.99225 4.16783 4.19268 4.22608 4.29529 4.31093 4.37287 4.44243 4.49149 4.51479 4.63667 4.66437 4.78701 4.79377 4.86569 4.92175 4.93837 5.01447 5.02522 5.04724 5.08321 5.10719 5.15231 5.27721 5.29444 5.32633 5.46124 5.48821 5.58318 5.80933 5.92961 5.99010 6.22621 6.29292 6.52693 6.55196 6.65665 6.76813 6.88466 7.37311 8.14887 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016171 B = 0.002146 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.048266 B =13045.491666 C =13597.550632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.378 6.378 4 C 0.075 3.925 5 H 0.097 0.903 6 C -0.175 4.175 7 C 0.107 3.893 8 O -0.546 6.546 9 C 0.119 3.881 10 N -0.723 5.723 11 C 0.576 3.424 12 O -0.602 6.602 13 C -0.294 4.294 14 C -0.033 4.033 15 C -0.253 4.253 16 C 0.101 3.899 17 C -0.472 4.472 18 H 0.085 0.915 19 C 0.038 3.962 20 N -0.796 5.796 21 Si 0.986 3.014 22 H -0.264 1.264 23 H -0.258 1.258 24 H -0.259 1.259 25 C -0.197 4.197 26 C -0.052 4.052 27 C -0.057 4.057 28 C -0.143 4.143 29 C -0.102 4.102 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.383 0.617 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.404 0.596 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.297 0.703 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.894 0.758 8.272 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.297 6.297 4 C 0.017 3.983 5 H 0.115 0.885 6 C -0.213 4.213 7 C 0.066 3.934 8 O -0.353 6.353 9 C -0.005 4.005 10 N -0.377 5.377 11 C 0.370 3.630 12 O -0.486 6.486 13 C -0.298 4.298 14 C -0.052 4.052 15 C -0.273 4.273 16 C 0.097 3.903 17 C -0.499 4.499 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.420 5.420 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.182 1.182 24 H -0.184 1.184 25 C -0.217 4.217 26 C -0.071 4.071 27 C -0.058 4.058 28 C -0.200 4.200 29 C -0.159 4.159 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.242 0.758 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.132 0.868 45 H 0.143 0.857 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.459 0.590 9.230 19.758 hybrid contribution 1.151 -0.119 -1.461 1.864 sum -16.308 0.471 7.769 18.070 Atomic orbital electron populations 1.21742 0.92750 1.03244 1.02739 1.22722 0.96476 0.83245 1.00613 1.87924 1.19879 1.27382 1.94547 1.23566 0.81755 0.97363 0.95648 0.88524 1.24157 0.98831 1.00364 0.97990 1.22519 0.91462 0.82531 0.96919 1.86545 1.66473 1.25455 1.56794 1.21671 0.88545 1.00432 0.89806 1.45605 1.15379 1.54754 1.22000 1.18352 0.81320 0.77383 0.85983 1.90624 1.77607 1.43685 1.36662 1.19129 0.97418 1.15391 0.97863 1.20514 0.92821 0.95456 0.96423 1.20849 1.01017 1.07747 0.97641 1.18151 0.92955 0.87198 0.91953 1.20092 0.95488 1.41242 0.93102 0.89707 1.26907 0.97172 0.92195 1.01817 1.69749 1.16491 1.31681 1.24057 0.85175 0.78502 0.79675 0.76042 1.18793 1.18240 1.18356 1.21021 0.96222 1.05094 0.99334 1.20716 0.98254 0.95963 0.92189 1.22259 0.93775 0.95916 0.93865 1.21847 1.01196 1.01993 0.95006 1.21154 0.96870 0.95813 1.02071 0.92403 0.89471 0.91990 0.93233 0.92497 0.88279 0.90724 0.76736 0.90865 0.91219 0.75792 0.87934 0.87883 0.89149 0.86774 0.85696 0.92042 0.90731 0.92022 0.92802 0.91733 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.70 6.50 71.98 0.47 1.16 16 3 O -0.38 -7.45 9.45 -148.98 -1.41 -8.85 16 4 C 0.07 1.44 3.37 31.12 0.10 1.55 16 5 H 0.10 1.73 7.20 -2.39 -0.02 1.71 16 6 C -0.18 -3.58 6.96 31.12 0.22 -3.36 16 7 C 0.11 2.31 1.41 -10.27 -0.01 2.29 16 8 O -0.55 -12.17 12.49 -148.98 -1.86 -14.03 16 9 C 0.12 3.07 4.00 86.38 0.35 3.42 16 10 N -0.72 -21.58 5.30 -466.16 -2.47 -24.05 16 11 C 0.58 23.11 7.76 86.73 0.67 23.78 16 12 O -0.60 -27.62 16.32 -3.96 -0.06 -27.69 16 13 C -0.29 -12.90 5.89 -19.93 -0.12 -13.02 16 14 C -0.03 -1.55 9.52 22.25 0.21 -1.34 16 15 C -0.25 -12.34 9.73 22.47 0.22 -12.13 16 16 C 0.10 5.13 5.57 -21.28 -0.12 5.01 16 17 C -0.47 -23.45 9.05 23.46 0.21 -23.23 16 18 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 19 C 0.04 1.75 5.14 85.35 0.44 2.19 16 20 N -0.80 -37.27 10.95 21.87 0.24 -37.03 16 21 Si 0.99 34.21 29.59 68.60 2.03 36.24 16 22 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 23 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 24 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 25 C -0.20 -9.46 8.63 22.47 0.19 -9.27 16 26 C -0.05 -2.19 9.47 22.25 0.21 -1.98 16 27 C -0.06 -1.13 1.30 -51.66 -0.07 -1.20 16 28 C -0.14 -2.58 8.00 71.98 0.58 -2.00 16 29 C -0.10 -2.02 7.92 71.98 0.57 -1.45 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 2.09 7.65 -2.39 -0.02 2.07 16 36 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 37 H 0.38 7.00 7.33 -74.05 -0.54 6.46 16 38 H 0.07 1.91 7.26 -2.39 -0.02 1.89 16 39 H 0.07 1.94 7.34 -2.39 -0.02 1.92 16 40 H 0.40 10.20 5.03 -92.71 -0.47 9.74 16 41 H 0.10 4.69 7.63 -2.91 -0.02 4.67 16 42 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.30 12.38 8.29 -92.71 -0.77 11.62 16 44 H 0.11 5.55 6.16 -2.91 -0.02 5.53 16 45 H 0.13 4.12 6.37 -2.91 -0.02 4.10 16 46 H 0.06 1.16 8.06 -2.39 -0.02 1.14 16 47 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.06 1.10 7.14 -2.39 -0.02 1.08 16 49 H 0.05 1.14 7.18 -2.39 -0.02 1.12 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.06 1.19 7.84 -2.39 -0.02 1.17 16 Total: -1.00 -61.01 407.48 1.27 -59.74 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: -0.06 Total: 46.32 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 4.86 Total: -30.64 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -2.23 Total: -61.09 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -3.33 Total: -50.57 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 2.03 Total: 36.24 kcal Total: -61.01 1.27 -59.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276690580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.952 kcal (2) G-P(sol) polarization free energy of solvation -61.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds