Wall clock time and date at job start Wed Apr 1 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00268 * 2 1 4 4 C 1.53004 * 109.47263 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47455 * 64.99843 * 4 3 2 6 6 C 1.35897 * 117.00547 * 180.02562 * 5 4 3 7 7 C 1.38729 * 120.05828 * 180.02562 * 6 5 4 8 8 C 1.38144 * 119.94370 * 180.02562 * 7 6 5 9 9 C 1.38271 * 120.05638 * 0.02562 * 8 7 6 10 10 C 1.50690 * 119.94518 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47185 * 90.00190 * 10 9 8 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46877 * 269.72057 * 14 13 11 16 16 H 1.08005 * 119.99817 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00081 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46844 * 60.00490 * 19 17 15 21 21 H 1.48496 * 109.47153 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47045 * 300.00555 * 19 17 15 23 23 C 1.46499 * 120.00036 * 359.72107 * 13 11 10 24 24 C 1.53001 * 109.47147 * 270.27655 * 23 13 11 25 25 C 1.53001 * 117.50182 * 243.62132 * 24 23 13 26 26 C 1.52999 * 60.00014 * 252.51157 * 25 24 23 27 27 C 1.38264 * 120.10978 * 0.25426 * 9 8 7 28 28 C 1.38149 * 120.05494 * 359.45476 * 27 9 8 29 29 H 1.09007 * 109.46754 * 60.00044 * 1 2 3 30 30 H 1.08996 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47322 * 300.00630 * 1 2 3 32 32 H 1.08999 * 109.47301 * 59.99798 * 3 2 1 33 33 H 1.09001 * 109.47162 * 299.99503 * 3 2 1 34 34 H 1.08999 * 109.46742 * 304.99410 * 4 3 2 35 35 H 1.08995 * 109.46953 * 185.00040 * 4 3 2 36 36 H 1.07997 * 120.02831 * 359.97438 * 7 6 5 37 37 H 1.07997 * 119.97172 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.47343 * 330.00456 * 10 9 8 39 39 H 1.08998 * 109.47656 * 210.00314 * 10 9 8 40 40 H 1.09000 * 109.46803 * 29.71536 * 14 13 11 41 41 H 1.09000 * 109.47214 * 149.72329 * 14 13 11 42 42 H 0.96998 * 119.99944 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.47173 * 30.28203 * 23 13 11 44 44 H 1.09005 * 109.47077 * 150.28374 * 23 13 11 45 45 H 1.08993 * 115.54979 * 29.33116 * 24 23 13 46 46 H 1.09004 * 117.49483 * 0.02562 * 25 24 23 47 47 H 1.08994 * 117.50176 * 145.01848 * 25 24 23 48 48 H 1.08995 * 117.49628 * 252.50731 * 26 25 24 49 49 H 1.08999 * 117.49412 * 107.49208 * 26 25 24 50 50 H 1.07995 * 119.97196 * 179.70053 * 27 9 8 51 51 H 1.07997 * 120.02561 * 180.25347 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9659 0.5791 -1.2200 6 6 5.3031 0.3971 -1.3806 7 6 5.7906 -0.1845 -2.5419 8 6 7.1503 -0.3689 -2.7025 9 6 8.0249 0.0253 -1.7067 10 6 9.5075 -0.1775 -1.8843 11 6 10.1057 1.0389 -2.5429 12 8 9.3975 1.9778 -2.8394 13 7 11.4272 1.0830 -2.8034 14 6 12.0088 2.2657 -3.4431 15 6 11.9818 2.0915 -4.9398 16 1 11.5721 1.1902 -5.3713 17 6 12.4792 3.0833 -5.7583 18 7 12.9777 4.1811 -5.2329 19 14 12.4465 2.8671 -7.6135 20 1 11.0427 2.6980 -8.0674 21 1 13.0358 4.0660 -8.2620 22 1 13.2354 1.6653 -7.9858 23 6 12.2834 -0.0491 -2.4407 24 6 12.8112 0.1459 -1.0179 25 6 14.3226 0.3052 -0.8407 26 6 13.6340 -0.9906 -0.4077 27 6 7.5410 0.5999 -0.5460 28 6 6.1827 0.7919 -0.3831 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8507 0.5685 0.8428 35 1 3.9785 2.1764 0.0902 36 1 5.1078 -0.4937 -3.3194 37 1 7.5303 -0.8220 -3.6061 38 1 9.6822 -1.0525 -2.5104 39 1 9.9728 -0.3290 -0.9103 40 1 11.4303 3.1481 -3.1696 41 1 13.0393 2.3892 -3.1103 42 1 13.3280 4.8786 -5.8087 43 1 11.7059 -0.9721 -2.4907 44 1 13.1222 -0.1073 -3.1345 45 1 12.1633 0.7130 -0.3498 46 1 14.9408 0.2716 -1.7378 47 1 14.6692 0.9775 -0.0559 48 1 13.5276 -1.1708 0.6620 49 1 13.7994 -1.8772 -1.0199 50 1 8.2258 0.9026 0.2323 51 1 5.8056 1.2446 0.5220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277520119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:53 Heat of formation + Delta-G solvation = -68.797372 kcal Electronic energy + Delta-G solvation = -29839.199614 eV Core-core repulsion = 25705.076805 eV Total energy + Delta-G solvation = -4134.122809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.20604 -39.21550 -38.25363 -37.37676 -36.86847 -34.31831 -32.64472 -32.07861 -31.01565 -30.47071 -28.16711 -26.88743 -26.57769 -25.63235 -23.83867 -22.85131 -22.17913 -22.01018 -21.05285 -20.61275 -18.43434 -18.26565 -17.14633 -16.51619 -16.32005 -16.31267 -16.02672 -15.82285 -15.33286 -15.14424 -14.89437 -14.78437 -14.53577 -14.21052 -13.95407 -13.60083 -13.29725 -13.15626 -12.89112 -12.68357 -12.32980 -12.30252 -12.21414 -11.93314 -11.69725 -11.59207 -11.35548 -11.34845 -11.26845 -11.14395 -10.91167 -10.84953 -10.67536 -10.58086 -10.26476 -10.10194 -10.08418 -9.69518 -9.59196 -8.87461 -8.81622 -8.39643 -7.90518 -7.62072 -6.00762 -4.05181 1.52308 1.58010 3.09276 3.33615 3.35712 3.38131 3.40468 3.50066 3.76377 3.94717 4.18803 4.48352 4.53999 4.74015 4.85487 4.90457 4.92966 4.95915 4.98252 5.01488 5.02611 5.09604 5.11077 5.12941 5.27381 5.31493 5.33115 5.43807 5.44988 5.51605 5.65560 5.70018 5.75035 5.78114 5.82077 5.92711 6.04846 6.08638 6.18919 6.27780 6.38825 6.46310 6.49645 6.72572 6.81950 6.89731 7.14301 7.46807 7.50081 7.60221 7.96149 8.28039 8.48199 8.94557 9.16837 9.59690 11.07205 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.002280 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.532829 B =12275.899631 C =14115.644159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.310 6.310 6 C 0.122 3.878 7 C -0.148 4.148 8 C -0.065 4.065 9 C -0.090 4.090 10 C -0.101 4.101 11 C 0.506 3.494 12 O -0.532 6.532 13 N -0.596 5.596 14 C 0.248 3.752 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.142 3.858 24 C -0.167 4.167 25 C -0.175 4.175 26 C -0.182 4.182 27 C -0.067 4.067 28 C -0.208 4.208 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.032 0.968 42 H 0.263 0.737 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.121 0.879 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.575 -11.047 14.486 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.224 6.224 6 C 0.077 3.923 7 C -0.167 4.167 8 C -0.083 4.083 9 C -0.090 4.090 10 C -0.141 4.141 11 C 0.292 3.708 12 O -0.409 6.409 13 N -0.327 5.327 14 C 0.129 3.871 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 C 0.017 3.983 24 C -0.186 4.186 25 C -0.212 4.212 26 C -0.219 4.219 27 C -0.085 4.085 28 C -0.227 4.227 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.112 0.888 50 H 0.139 0.861 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.907 -10.548 14.126 23.087 hybrid contribution 0.055 0.402 -0.795 0.893 sum -14.851 -10.146 13.330 22.387 Atomic orbital electron populations 1.22759 0.80905 1.02958 0.99957 1.87970 1.19754 1.27203 1.95408 1.22590 0.91729 0.85684 1.01398 1.22792 0.93440 0.98370 0.86829 1.86091 1.20418 1.77080 1.38785 1.18929 0.81968 0.96578 0.94819 1.20321 0.95486 1.04171 0.96721 1.20811 0.91866 0.97740 0.97866 1.19282 0.94223 1.00825 0.94687 1.20725 0.92391 0.98506 1.02453 1.20248 0.82473 0.88371 0.79682 1.90693 1.59633 1.38079 1.52455 1.48198 1.06379 1.19267 1.58892 1.19242 0.93577 0.82384 0.91880 1.21403 1.40066 1.03533 0.91346 0.92581 1.24930 0.95281 0.95004 0.98918 1.69927 1.40819 1.07222 1.35433 0.86585 0.78387 0.77379 0.85225 1.20191 1.21227 1.20286 1.21021 0.95411 0.89230 0.92608 1.22906 0.94468 1.02453 0.98778 1.22997 0.95251 0.99540 1.03382 1.22923 1.05384 0.92922 1.00699 1.20724 0.94388 0.96268 0.97098 1.21090 0.94142 1.07583 0.99850 0.93899 0.89496 0.94118 0.91178 0.91993 0.91188 0.90391 0.85450 0.85490 0.88703 0.88774 0.94053 0.94990 0.92741 0.91152 0.89857 0.88018 0.88450 0.89210 0.89202 0.88831 0.86113 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.93 10.67 -40.08 -0.43 -4.35 16 3 C 0.06 0.51 6.32 37.16 0.23 0.75 16 4 C 0.06 0.59 5.12 37.16 0.19 0.78 16 5 O -0.31 -4.18 10.10 -24.26 -0.25 -4.42 16 6 C 0.12 1.76 6.69 -39.22 -0.26 1.50 16 7 C -0.15 -2.18 9.99 -39.43 -0.39 -2.57 16 8 C -0.06 -0.98 9.69 -39.60 -0.38 -1.36 16 9 C -0.09 -1.38 4.37 -104.60 -0.46 -1.84 16 10 C -0.10 -1.50 4.38 -29.04 -0.13 -1.63 16 11 C 0.51 10.44 7.67 -10.98 -0.08 10.36 16 12 O -0.53 -13.57 15.61 5.56 0.09 -13.48 16 13 N -0.60 -12.42 2.46 -175.05 -0.43 -12.85 16 14 C 0.25 6.50 5.17 -5.19 -0.03 6.47 16 15 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 16 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 19 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.14 2.25 5.49 -4.04 -0.02 2.23 16 24 C -0.17 -2.28 5.92 -90.62 -0.54 -2.82 16 25 C -0.17 -2.25 10.18 -26.73 -0.27 -2.53 16 26 C -0.18 -1.97 10.25 -26.73 -0.27 -2.24 16 27 C -0.07 -0.96 9.69 -39.60 -0.38 -1.34 16 28 C -0.21 -2.80 9.04 -39.43 -0.36 -3.16 16 29 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.08 0.64 7.67 -51.93 -0.40 0.24 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.09 1.22 7.35 -51.93 -0.38 0.84 16 39 H 0.09 1.17 7.96 -51.93 -0.41 0.76 16 40 H 0.04 1.23 7.41 -51.93 -0.38 0.85 16 41 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.07 0.93 6.45 -51.93 -0.33 0.59 16 44 H 0.08 1.40 7.81 -51.93 -0.41 1.00 16 45 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.10 1.30 8.03 -51.93 -0.42 0.89 16 47 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 51 H 0.12 1.32 6.30 -52.49 -0.33 0.99 16 LS Contribution 427.07 15.07 6.44 6.44 Total: -1.00 -35.60 427.07 -9.83 -45.43 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.50 Total: 1.95 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.46 Total: -9.68 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.31 Total: -38.91 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.59 Total: -22.26 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -35.60 -9.83 -45.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277520119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.367 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds