Wall clock time and date at job start Wed Apr 1 2020 05:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00268 * 2 1 4 4 C 1.53004 * 109.47263 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47455 * 64.99843 * 4 3 2 6 6 C 1.35897 * 117.00547 * 180.02562 * 5 4 3 7 7 C 1.38729 * 120.05828 * 180.02562 * 6 5 4 8 8 C 1.38144 * 119.94370 * 180.02562 * 7 6 5 9 9 C 1.38271 * 120.05638 * 0.02562 * 8 7 6 10 10 C 1.50690 * 119.94518 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47185 * 90.00190 * 10 9 8 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46877 * 269.72057 * 14 13 11 16 16 H 1.08005 * 119.99817 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00081 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46844 * 60.00490 * 19 17 15 21 21 H 1.48496 * 109.47153 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47045 * 300.00555 * 19 17 15 23 23 C 1.46499 * 120.00036 * 359.72107 * 13 11 10 24 24 C 1.53001 * 109.47147 * 270.27655 * 23 13 11 25 25 C 1.53001 * 117.50182 * 243.62132 * 24 23 13 26 26 C 1.52999 * 60.00014 * 252.51157 * 25 24 23 27 27 C 1.38264 * 120.10978 * 0.25426 * 9 8 7 28 28 C 1.38149 * 120.05494 * 359.45476 * 27 9 8 29 29 H 1.09007 * 109.46754 * 60.00044 * 1 2 3 30 30 H 1.08996 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47322 * 300.00630 * 1 2 3 32 32 H 1.08999 * 109.47301 * 59.99798 * 3 2 1 33 33 H 1.09001 * 109.47162 * 299.99503 * 3 2 1 34 34 H 1.08999 * 109.46742 * 304.99410 * 4 3 2 35 35 H 1.08995 * 109.46953 * 185.00040 * 4 3 2 36 36 H 1.07997 * 120.02831 * 359.97438 * 7 6 5 37 37 H 1.07997 * 119.97172 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.47343 * 330.00456 * 10 9 8 39 39 H 1.08998 * 109.47656 * 210.00314 * 10 9 8 40 40 H 1.09000 * 109.46803 * 29.71536 * 14 13 11 41 41 H 1.09000 * 109.47214 * 149.72329 * 14 13 11 42 42 H 0.96998 * 119.99944 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.47173 * 30.28203 * 23 13 11 44 44 H 1.09005 * 109.47077 * 150.28374 * 23 13 11 45 45 H 1.08993 * 115.54979 * 29.33116 * 24 23 13 46 46 H 1.09004 * 117.49483 * 0.02562 * 25 24 23 47 47 H 1.08994 * 117.50176 * 145.01848 * 25 24 23 48 48 H 1.08995 * 117.49628 * 252.50731 * 26 25 24 49 49 H 1.08999 * 117.49412 * 107.49208 * 26 25 24 50 50 H 1.07995 * 119.97196 * 179.70053 * 27 9 8 51 51 H 1.07997 * 120.02561 * 180.25347 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9659 0.5791 -1.2200 6 6 5.3031 0.3971 -1.3806 7 6 5.7906 -0.1845 -2.5419 8 6 7.1503 -0.3689 -2.7025 9 6 8.0249 0.0253 -1.7067 10 6 9.5075 -0.1775 -1.8843 11 6 10.1057 1.0389 -2.5429 12 8 9.3975 1.9778 -2.8394 13 7 11.4272 1.0830 -2.8034 14 6 12.0088 2.2657 -3.4431 15 6 11.9818 2.0915 -4.9398 16 1 11.5721 1.1902 -5.3713 17 6 12.4792 3.0833 -5.7583 18 7 12.9777 4.1811 -5.2329 19 14 12.4465 2.8671 -7.6135 20 1 11.0427 2.6980 -8.0674 21 1 13.0358 4.0660 -8.2620 22 1 13.2354 1.6653 -7.9858 23 6 12.2834 -0.0491 -2.4407 24 6 12.8112 0.1459 -1.0179 25 6 14.3226 0.3052 -0.8407 26 6 13.6340 -0.9906 -0.4077 27 6 7.5410 0.5999 -0.5460 28 6 6.1827 0.7919 -0.3831 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8507 0.5685 0.8428 35 1 3.9785 2.1764 0.0902 36 1 5.1078 -0.4937 -3.3194 37 1 7.5303 -0.8220 -3.6061 38 1 9.6822 -1.0525 -2.5104 39 1 9.9728 -0.3290 -0.9103 40 1 11.4303 3.1481 -3.1696 41 1 13.0393 2.3892 -3.1103 42 1 13.3280 4.8786 -5.8087 43 1 11.7059 -0.9721 -2.4907 44 1 13.1222 -0.1073 -3.1345 45 1 12.1633 0.7130 -0.3498 46 1 14.9408 0.2716 -1.7378 47 1 14.6692 0.9775 -0.0559 48 1 13.5276 -1.1708 0.6620 49 1 13.7994 -1.8772 -1.0199 50 1 8.2258 0.9026 0.2323 51 1 5.8056 1.2446 0.5220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277520119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:52 Heat of formation + Delta-G solvation = -89.783017 kcal Electronic energy + Delta-G solvation = -29840.109620 eV Core-core repulsion = 25705.076805 eV Total energy + Delta-G solvation = -4135.032815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.30916 -40.62038 -39.07666 -38.39649 -37.99491 -36.04277 -34.61537 -33.29576 -32.05949 -31.34542 -29.94663 -28.03784 -27.35342 -27.13151 -24.84347 -24.56008 -23.13571 -23.04755 -22.19351 -21.74806 -19.90657 -19.28622 -18.60667 -17.84613 -17.79934 -17.44769 -17.25833 -16.66684 -16.42611 -16.20419 -16.14847 -16.00396 -15.83967 -15.45586 -15.17861 -14.79072 -14.45477 -14.31373 -14.25916 -14.04329 -13.57991 -13.56667 -13.35756 -13.13592 -12.99145 -12.76822 -12.65997 -12.56394 -12.49580 -12.41740 -12.26853 -12.23581 -12.19469 -11.78726 -11.71529 -11.67185 -11.23338 -10.79354 -10.68389 -10.62552 -10.52813 -9.90854 -9.39327 -9.00900 -8.20807 -6.35310 0.43408 0.46100 1.35742 1.40244 1.47263 1.90955 2.21858 2.30339 2.45023 2.78262 2.85757 3.02820 3.08489 3.76976 3.79793 3.85308 3.95774 3.98669 4.03500 4.09205 4.11717 4.24061 4.30009 4.35573 4.38173 4.43649 4.51079 4.51654 4.54477 4.59141 4.61748 4.69532 4.74633 4.82944 4.85771 4.87165 4.91305 5.06722 5.11097 5.12131 5.25731 5.31205 5.34337 5.37259 5.39828 5.60123 5.70087 5.84060 5.89666 6.09248 6.16931 6.48081 6.72639 6.85655 7.30622 7.55988 8.85870 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.002280 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.532829 B =12275.899631 C =14115.644159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.062 3.938 4 C 0.051 3.949 5 O -0.326 6.326 6 C 0.115 3.885 7 C -0.165 4.165 8 C -0.077 4.077 9 C -0.111 4.111 10 C -0.083 4.083 11 C 0.499 3.501 12 O -0.592 6.592 13 N -0.600 5.600 14 C 0.266 3.734 15 C -0.540 4.540 16 H 0.054 0.946 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.965 3.035 20 H -0.278 1.278 21 H -0.279 1.279 22 H -0.259 1.259 23 C 0.140 3.860 24 C -0.183 4.183 25 C -0.194 4.194 26 C -0.142 4.142 27 C -0.075 4.075 28 C -0.210 4.210 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.126 0.874 40 H -0.007 1.007 41 H 0.019 0.981 42 H 0.266 0.734 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.137 0.863 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 -13.109 15.509 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.015 4.015 4 C -0.024 4.024 5 O -0.241 6.241 6 C 0.070 3.930 7 C -0.184 4.184 8 C -0.095 4.095 9 C -0.111 4.111 10 C -0.122 4.122 11 C 0.288 3.712 12 O -0.472 6.472 13 N -0.330 5.330 14 C 0.145 3.855 15 C -0.578 4.578 16 H 0.072 0.928 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.790 3.210 20 H -0.204 1.204 21 H -0.204 1.204 22 H -0.183 1.183 23 C 0.017 3.983 24 C -0.202 4.202 25 C -0.231 4.231 26 C -0.179 4.179 27 C -0.093 4.093 28 C -0.228 4.228 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.011 0.989 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.124 0.876 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.130 0.870 49 H 0.129 0.871 50 H 0.155 0.845 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.329 -12.661 15.179 25.014 hybrid contribution 0.126 1.086 -1.044 1.511 sum -15.204 -11.576 14.135 23.768 Atomic orbital electron populations 1.22927 0.79321 1.03797 1.01016 1.87918 1.21644 1.28400 1.95661 1.22716 0.90633 0.85333 1.02778 1.23126 0.94635 0.98974 0.85640 1.86080 1.19834 1.77380 1.40761 1.19111 0.82706 0.96285 0.94925 1.20528 0.95695 1.04717 0.97444 1.20998 0.92217 0.98101 0.98208 1.19449 0.94431 1.01893 0.95354 1.20673 0.91914 0.95890 1.03738 1.21285 0.81758 0.89410 0.78726 1.90657 1.60922 1.40701 1.54952 1.48180 1.07403 1.18995 1.58431 1.18635 0.92107 0.83267 0.91510 1.21694 1.39985 1.03576 0.92583 0.92797 1.25864 0.94755 0.94610 1.04083 1.70056 1.41505 1.08022 1.37279 0.85504 0.78337 0.78182 0.79022 1.20409 1.20439 1.18337 1.21278 0.94801 0.88583 0.93642 1.22731 0.94694 1.05297 0.97501 1.23062 0.94635 1.01946 1.03430 1.23029 1.00955 0.91950 1.02012 1.21021 0.95171 0.95821 0.97322 1.21383 0.93792 1.07067 1.00584 0.93515 0.88895 0.92338 0.88134 0.92152 0.90457 0.88961 0.84764 0.84856 0.86104 0.85644 0.98938 0.96256 0.92521 0.87588 0.91227 0.88605 0.89538 0.88961 0.87002 0.87133 0.84550 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.06 10.67 -144.35 -1.54 -9.60 16 3 C 0.06 0.92 6.32 71.98 0.45 1.37 16 4 C 0.05 0.91 5.12 71.98 0.37 1.28 16 5 O -0.33 -8.63 10.10 -87.75 -0.89 -9.52 16 6 C 0.11 3.26 6.69 22.51 0.15 3.41 16 7 C -0.17 -4.87 9.99 22.36 0.22 -4.64 16 8 C -0.08 -2.32 9.69 22.26 0.22 -2.10 16 9 C -0.11 -3.32 4.37 -19.85 -0.09 -3.40 16 10 C -0.08 -2.32 4.38 29.10 0.13 -2.19 16 11 C 0.50 20.79 7.67 87.66 0.67 21.46 16 12 O -0.59 -31.39 15.61 -3.03 -0.05 -31.43 16 13 N -0.60 -25.41 2.46 -826.13 -2.03 -27.44 16 14 C 0.27 14.63 5.17 85.63 0.44 15.07 16 15 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 16 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 17 C 0.01 0.33 5.46 84.65 0.46 0.79 16 18 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 19 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 C 0.14 4.27 5.49 86.38 0.47 4.75 16 24 C -0.18 -4.72 5.92 -10.79 -0.06 -4.78 16 25 C -0.19 -4.79 10.18 30.59 0.31 -4.48 16 26 C -0.14 -2.59 10.25 30.59 0.31 -2.27 16 27 C -0.08 -2.08 9.69 22.25 0.22 -1.87 16 28 C -0.21 -5.42 9.04 22.37 0.20 -5.22 16 29 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.26 7.66 -2.39 -0.02 1.24 16 35 H 0.09 1.36 7.67 -2.39 -0.02 1.34 16 36 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.12 2.75 7.35 -2.39 -0.02 2.74 16 39 H 0.13 2.73 7.96 -2.39 -0.02 2.71 16 40 H -0.01 -0.48 7.41 -2.39 -0.02 -0.50 16 41 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.11 2.46 6.45 -2.39 -0.02 2.45 16 44 H 0.07 2.32 7.81 -2.38 -0.02 2.30 16 45 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.09 2.31 8.03 -2.38 -0.02 2.29 16 47 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 51 H 0.15 2.91 6.30 -2.91 -0.02 2.89 16 Total: -1.00 -81.61 427.07 4.68 -76.93 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.90 Total: 22.92 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.97 Total: -12.59 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -1.74 Total: -84.41 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -2.47 Total: -50.55 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -81.61 4.68 -76.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277520119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.856 kcal (2) G-P(sol) polarization free energy of solvation -81.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds