Wall clock time and date at job start Wed Apr 1 2020 04:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.04825 * 2 1 4 4 O 1.43887 * 109.91220 * 121.18051 * 2 1 3 5 5 C 1.44420 * 107.00375 * 145.73313 * 4 2 1 6 6 C 1.55105 * 103.55314 * 320.26568 * 5 4 2 7 7 C 1.53586 * 109.90931 * 238.82983 * 2 1 3 8 8 C 1.52468 * 110.45650 * 356.92795 * 7 2 1 9 9 N 1.47137 * 109.31294 * 178.09611 * 8 7 2 10 10 C 1.46896 * 111.00018 * 178.71540 * 9 8 7 11 11 C 1.50702 * 109.46920 * 170.00047 * 10 9 8 12 12 C 1.38303 * 119.92904 * 89.99996 * 11 10 9 13 13 C 1.38108 * 120.06534 * 180.02562 * 12 11 10 14 14 C 1.38877 * 119.93181 * 359.97438 * 13 12 11 15 15 O 1.35747 * 120.06827 * 179.97438 * 14 13 12 16 16 C 1.34822 * 117.00161 * 5.53068 * 15 14 13 17 17 H 1.08004 * 120.00205 * 354.94858 * 16 15 14 18 18 C 1.38654 * 120.00200 * 174.94014 * 16 15 14 19 19 N 1.31553 * 119.99993 * 359.72918 * 18 16 15 20 20 Si 1.86806 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47125 * 179.72603 * 20 18 16 22 22 H 1.48493 * 109.47133 * 299.73073 * 20 18 16 23 23 H 1.48495 * 109.46956 * 59.73115 * 20 18 16 24 24 C 1.38884 * 119.86025 * 0.25082 * 14 13 12 25 25 C 1.38097 * 119.93210 * 359.49481 * 24 14 13 26 26 C 1.47019 * 110.67218 * 302.43602 * 9 8 7 27 27 C 1.53107 * 109.37169 * 59.11406 * 26 9 8 28 28 H 1.09004 * 109.56216 * 62.56693 * 27 26 9 29 29 C 1.53005 * 109.51626 * 182.70882 * 27 26 9 30 30 O 1.42305 * 110.57350 * 119.97326 * 7 2 1 31 31 H 1.09007 * 109.46817 * 181.17203 * 1 2 3 32 32 H 1.09000 * 109.47409 * 301.17389 * 1 2 3 33 33 H 1.09002 * 109.47363 * 61.17765 * 1 2 3 34 34 H 1.09002 * 110.60947 * 78.78140 * 5 4 2 35 35 H 1.08997 * 110.61132 * 201.74905 * 5 4 2 36 36 H 1.09000 * 110.93171 * 278.44788 * 6 5 4 37 37 H 1.09001 * 110.92902 * 154.78811 * 6 5 4 38 38 H 1.08993 * 109.49981 * 58.14507 * 8 7 2 39 39 H 1.09006 * 109.52685 * 298.06286 * 8 7 2 40 40 H 1.08997 * 109.47596 * 49.99947 * 10 9 8 41 41 H 1.08999 * 109.47091 * 289.99731 * 10 9 8 42 42 H 1.07994 * 119.96977 * 0.03978 * 12 11 10 43 43 H 1.07996 * 120.03323 * 179.97438 * 13 12 11 44 44 H 0.97007 * 120.00140 * 0.27194 * 19 18 16 45 45 H 1.07997 * 120.03119 * 179.72764 * 24 14 13 46 46 H 1.08000 * 119.96521 * 180.27359 * 25 24 14 47 47 H 1.08999 * 109.48478 * 179.07700 * 26 9 8 48 48 H 1.08993 * 109.48960 * 299.14496 * 26 9 8 49 49 H 1.08996 * 109.46548 * 179.71428 * 29 27 26 50 50 H 1.08996 * 109.47056 * 299.71299 * 29 27 26 51 51 H 1.09000 * 109.46837 * 59.71246 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 8 2.0200 -0.7004 1.1574 5 6 3.2370 -1.3700 0.7620 6 6 2.9188 -1.8899 -0.6643 7 6 2.0530 -0.7474 -1.2356 8 6 0.8932 -1.3237 -2.0403 9 7 1.4189 -1.9938 -3.2401 10 6 0.3325 -2.5901 -4.0286 11 6 0.8709 -3.0485 -5.3595 12 6 1.3656 -4.3326 -5.4984 13 6 1.8602 -4.7554 -6.7166 14 6 1.8599 -3.8900 -7.8028 15 8 2.3458 -4.3026 -9.0013 16 6 2.7076 -5.5974 -9.1021 17 1 2.6819 -6.2348 -8.2306 18 6 3.1125 -6.1109 -10.3248 19 7 3.1386 -5.3360 -11.3875 20 14 3.6145 -7.9048 -10.4644 21 1 3.9961 -8.2043 -11.8680 22 1 4.7709 -8.1663 -9.5704 23 1 2.4753 -8.7700 -10.0659 24 6 1.3667 -2.5997 -7.6587 25 6 0.8687 -2.1845 -6.4394 26 6 2.2080 -1.0574 -4.0538 27 6 3.3695 -0.5127 -3.2182 28 1 4.0296 -1.3320 -2.9330 29 6 4.1533 0.5129 -4.0397 30 8 2.8491 0.1140 -2.0413 31 1 -0.3633 -1.0275 0.0210 32 1 -0.3634 0.5319 0.8793 33 1 -0.3634 0.4954 -0.9004 34 1 4.0705 -0.6681 0.7373 35 1 3.4535 -2.2007 1.4336 36 1 2.3553 -2.8220 -0.6223 37 1 3.8322 -2.0146 -1.2460 38 1 0.2216 -0.5186 -2.3381 39 1 0.3490 -2.0445 -1.4300 40 1 -0.4496 -1.8481 -4.1892 41 1 -0.0810 -3.4432 -3.4907 42 1 1.3649 -5.0053 -4.6536 43 1 2.2467 -5.7581 -6.8244 44 1 2.8784 -4.4043 -11.3150 45 1 1.3692 -1.9230 -8.5003 46 1 0.4810 -1.1827 -6.3279 47 1 2.6010 -1.5772 -4.9276 48 1 1.5735 -0.2319 -4.3761 49 1 4.9769 0.9039 -3.4424 50 1 4.5491 0.0348 -4.9356 51 1 3.4920 1.3307 -4.3263 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279706961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:31 Heat of formation + Delta-G solvation = -102.964242 kcal Electronic energy + Delta-G solvation = -31657.156380 eV Core-core repulsion = 27521.551984 eV Total energy + Delta-G solvation = -4135.604396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02416 -40.95126 -39.47832 -38.52574 -36.61691 -34.52853 -34.28797 -32.63393 -32.11803 -31.85982 -30.94836 -27.89886 -27.68229 -26.80087 -25.91744 -24.08370 -23.81122 -23.50740 -22.15852 -21.65048 -20.35898 -20.09968 -18.72337 -18.36762 -17.44838 -17.09014 -16.92834 -16.74529 -16.43150 -16.07059 -15.92874 -15.72531 -15.58910 -15.34776 -15.11951 -14.98229 -14.75146 -14.46895 -14.24442 -14.08136 -13.57379 -13.51636 -13.45821 -13.21323 -13.03255 -12.90543 -12.74402 -12.64302 -12.42575 -12.39428 -12.29538 -12.21405 -12.10680 -11.94582 -11.84964 -11.78334 -11.30666 -11.28607 -10.76644 -10.71332 -10.56500 -9.85136 -9.40675 -8.98451 -8.93321 -6.25238 0.50384 0.56898 1.48364 1.60297 1.78066 2.34906 2.44465 2.61099 2.83112 2.96314 3.16374 3.32119 3.44712 3.63461 3.75813 3.82808 3.91494 3.98096 4.04948 4.10550 4.11229 4.19047 4.24444 4.33993 4.36095 4.37649 4.49771 4.53854 4.58758 4.61630 4.62332 4.66752 4.76595 4.79006 4.81338 4.83517 4.94046 4.97022 5.02214 5.06427 5.09610 5.19441 5.20809 5.22987 5.24577 5.47269 5.69366 5.72389 5.76439 5.93479 5.96166 6.05013 6.24319 6.27610 6.85376 7.61554 8.49910 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.002293 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.397192 B =12209.879892 C =12293.467060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.088 3.912 3 H 0.073 0.927 4 O -0.386 6.386 5 C 0.046 3.954 6 C -0.164 4.164 7 C 0.091 3.909 8 C 0.038 3.962 9 N -0.535 5.535 10 C 0.115 3.885 11 C -0.155 4.155 12 C -0.047 4.047 13 C -0.240 4.240 14 C 0.119 3.881 15 O -0.252 6.252 16 C -0.486 4.486 17 H 0.091 0.909 18 C -0.044 4.044 19 N -0.918 5.918 20 Si 1.143 2.857 21 H -0.274 1.274 22 H -0.260 1.260 23 H -0.260 1.260 24 C -0.202 4.202 25 C -0.057 4.057 26 C 0.027 3.973 27 C 0.090 3.910 28 H 0.064 0.936 29 C -0.142 4.142 30 O -0.379 6.379 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.139 0.861 43 H 0.115 0.885 44 H 0.260 0.740 45 H 0.113 0.887 46 H 0.140 0.860 47 H 0.078 0.922 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 9.527 24.583 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.030 3.970 3 H 0.091 0.909 4 O -0.305 6.305 5 C -0.030 4.030 6 C -0.202 4.202 7 C 0.051 3.949 8 C -0.090 4.090 9 N -0.259 5.259 10 C -0.011 4.011 11 C -0.156 4.156 12 C -0.066 4.066 13 C -0.260 4.260 14 C 0.069 3.931 15 O -0.160 6.160 16 C -0.562 4.562 17 H 0.109 0.891 18 C -0.240 4.240 19 N -0.552 5.552 20 Si 0.959 3.041 21 H -0.199 1.199 22 H -0.184 1.184 23 H -0.185 1.185 24 C -0.222 4.222 25 C -0.075 4.075 26 C -0.101 4.101 27 C 0.033 3.967 28 H 0.081 0.919 29 C -0.199 4.199 30 O -0.299 6.299 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.156 0.844 43 H 0.133 0.867 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.158 0.842 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.997 8.313 23.711 25.304 hybrid contribution -0.735 1.670 -0.104 1.827 sum -3.732 9.982 23.607 25.901 Atomic orbital electron populations 1.22024 0.91522 1.03722 1.03391 1.22560 0.96237 0.95656 0.82592 0.90886 1.88916 1.40730 1.67823 1.33058 1.23674 0.87140 0.96778 0.95406 1.23526 1.01108 0.98995 0.96584 1.22448 0.90976 0.90249 0.91231 1.22847 0.95775 0.98266 0.92069 1.62379 1.23582 1.32894 1.07093 1.20886 0.91234 0.99385 0.89609 1.19535 1.06191 0.94298 0.95545 1.20903 0.94436 0.95899 0.95340 1.21262 1.09634 1.00933 0.94141 1.19809 0.92846 0.94583 0.85851 1.83640 1.72594 1.29299 1.30432 1.22566 1.49323 0.84388 0.99925 0.89138 1.28356 0.95064 1.11275 0.89334 1.70716 1.45177 1.08106 1.31228 0.82604 0.77823 0.66276 0.77394 1.19877 1.18429 1.18485 1.20396 1.07842 0.94154 0.99771 1.20835 0.96684 0.99328 0.90654 1.22803 0.95805 0.94614 0.96924 1.22250 0.94048 0.95674 0.84756 0.91858 1.21737 1.00108 0.98677 0.99427 1.87872 1.67998 1.38326 1.35653 0.90865 0.90998 0.90067 0.92019 0.87219 0.89069 0.90041 0.92946 0.87898 0.93075 0.88646 0.84366 0.86676 0.93159 0.86893 0.84198 0.90356 0.94139 0.90967 0.90604 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.39 71.98 0.60 -1.34 16 2 C 0.09 1.53 3.88 30.79 0.12 1.65 16 3 H 0.07 1.37 7.96 -2.39 -0.02 1.35 16 4 O -0.39 -7.54 11.20 -148.98 -1.67 -9.21 16 5 C 0.05 0.75 7.73 72.70 0.56 1.31 16 6 C -0.16 -2.87 5.98 31.76 0.19 -2.68 16 7 C 0.09 1.68 0.99 -10.33 -0.01 1.67 16 8 C 0.04 0.65 3.01 86.08 0.26 0.91 16 9 N -0.53 -11.13 4.67 -900.72 -4.21 -15.34 16 10 C 0.12 2.43 5.43 85.56 0.46 2.90 16 11 C -0.15 -4.44 4.15 -19.83 -0.08 -4.52 16 12 C -0.05 -1.56 9.69 22.25 0.22 -1.34 16 13 C -0.24 -10.25 9.17 22.39 0.21 -10.04 16 14 C 0.12 5.76 6.65 22.58 0.15 5.91 16 15 O -0.25 -14.82 9.16 -22.63 -0.21 -15.02 16 16 C -0.49 -28.25 9.49 67.92 0.64 -27.60 16 17 H 0.09 4.90 5.20 -2.91 -0.02 4.88 16 18 C -0.04 -2.53 5.49 84.83 0.47 -2.06 16 19 N -0.92 -57.29 13.70 21.61 0.30 -56.99 16 20 Si 1.14 47.83 29.92 68.60 2.05 49.88 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 24 C -0.20 -8.18 9.99 22.39 0.22 -7.95 16 25 C -0.06 -1.76 7.84 22.25 0.17 -1.58 16 26 C 0.03 0.61 3.94 86.32 0.34 0.95 16 27 C 0.09 1.92 3.15 30.63 0.10 2.02 16 28 H 0.06 1.42 6.40 -2.38 -0.02 1.40 16 29 C -0.14 -2.68 9.57 71.98 0.69 -1.99 16 30 O -0.38 -8.21 9.86 -148.98 -1.47 -9.68 16 31 H 0.07 0.88 6.75 -2.38 -0.02 0.87 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.93 6.78 -2.39 -0.02 0.91 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.56 7.78 -2.39 -0.02 1.54 16 37 H 0.08 1.54 6.21 -2.39 -0.01 1.52 16 38 H 0.05 0.86 6.58 -2.39 -0.02 0.84 16 39 H 0.10 1.51 6.85 -2.38 -0.02 1.50 16 40 H 0.05 0.97 8.02 -2.39 -0.02 0.95 16 41 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 42 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 43 H 0.12 5.12 5.64 -2.91 -0.02 5.10 16 44 H 0.26 16.91 7.97 -92.70 -0.74 16.17 16 45 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 46 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 47 H 0.08 2.14 5.88 -2.39 -0.01 2.13 16 48 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -69.74 391.65 1.07 -68.67 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.96 Total: 31.51 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 5.31 Total: -43.82 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -3.91 Total: -72.33 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -3.34 Total: -33.91 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.05 Total: 49.88 kcal Total: -69.74 1.07 -68.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279706961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.291 kcal (2) G-P(sol) polarization free energy of solvation -69.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds