Wall clock time and date at job start Wed Apr 1 2020 04:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53113 * 1 3 3 H 1.08893 * 109.95081 * 2 1 4 4 O 1.43674 * 109.34173 * 121.08077 * 2 1 3 5 5 C 1.43817 * 110.08975 * 115.64120 * 4 2 1 6 6 C 1.55015 * 105.36810 * 339.55840 * 5 4 2 7 7 C 1.53655 * 110.23030 * 238.52528 * 2 1 3 8 8 C 1.52324 * 110.60929 * 151.56706 * 7 2 1 9 9 N 1.46994 * 110.19937 * 282.76589 * 8 7 2 10 10 C 1.46899 * 111.08279 * 178.82268 * 9 8 7 11 11 C 1.50703 * 109.46744 * 188.86213 * 10 9 8 12 12 C 1.38298 * 119.93042 * 90.00282 * 11 10 9 13 13 C 1.38096 * 120.06798 * 179.97438 * 12 11 10 14 14 C 1.38878 * 119.93166 * 359.97438 * 13 12 11 15 15 O 1.35751 * 120.06632 * 179.97438 * 14 13 12 16 16 C 1.34825 * 117.00369 * 354.47748 * 15 14 13 17 17 H 1.07998 * 120.00313 * 5.06007 * 16 15 14 18 18 C 1.38655 * 120.00287 * 185.06530 * 16 15 14 19 19 N 1.31555 * 119.99917 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00297 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47342 * 89.99533 * 20 18 16 22 22 H 1.48495 * 109.46950 * 209.99897 * 20 18 16 23 23 H 1.48503 * 109.46719 * 329.99527 * 20 18 16 24 24 C 1.38873 * 119.86379 * 359.97438 * 14 13 12 25 25 C 1.38098 * 119.93065 * 0.02562 * 24 14 13 26 26 C 1.47141 * 110.10667 * 302.11090 * 9 8 7 27 27 C 1.53118 * 108.64271 * 62.14629 * 26 9 8 28 28 H 1.09124 * 109.07965 * 63.86796 * 27 26 9 29 29 C 1.53228 * 109.22565 * 182.85848 * 27 26 9 30 30 O 1.41239 * 112.07268 * 24.84723 * 7 2 1 31 31 H 1.08996 * 109.46880 * 181.47580 * 1 2 3 32 32 H 1.08995 * 109.47330 * 301.47383 * 1 2 3 33 33 H 1.08997 * 109.47180 * 61.47555 * 1 2 3 34 34 H 1.09313 * 110.59357 * 98.72671 * 5 4 2 35 35 H 1.09302 * 110.65716 * 220.37688 * 5 4 2 36 36 H 1.08678 * 111.44627 * 277.95060 * 6 5 4 37 37 H 1.08779 * 111.26983 * 152.73658 * 6 5 4 38 38 H 1.09148 * 109.44709 * 162.43297 * 8 7 2 39 39 H 1.09165 * 109.42681 * 42.97441 * 8 7 2 40 40 H 1.09004 * 109.47226 * 68.86621 * 10 9 8 41 41 H 1.08995 * 109.46945 * 308.86081 * 10 9 8 42 42 H 1.08001 * 119.96195 * 0.02562 * 12 11 10 43 43 H 1.08003 * 120.03408 * 179.72170 * 13 12 11 44 44 H 0.96997 * 120.00240 * 180.02562 * 19 18 16 45 45 H 1.07998 * 120.03394 * 180.02562 * 24 14 13 46 46 H 1.08002 * 119.96899 * 180.02562 * 25 24 14 47 47 H 1.08876 * 109.58809 * 181.91146 * 26 9 8 48 48 H 1.08909 * 109.54056 * 302.44041 * 26 9 8 49 49 H 1.09003 * 109.46914 * 59.99791 * 29 27 26 50 50 H 1.08992 * 109.47019 * 179.97438 * 29 27 26 51 51 H 1.08996 * 109.46744 * 300.00273 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5311 0.0000 0.0000 3 1 1.9027 1.0236 0.0000 4 8 2.0070 -0.6999 1.1610 5 6 2.7221 -1.8834 0.7658 6 6 2.2431 -2.1905 -0.6761 7 6 2.0625 -0.7528 -1.2296 8 6 3.4243 -0.2101 -1.6434 9 7 3.2669 1.0645 -2.3584 10 6 4.5716 1.6196 -2.7424 11 6 4.3858 3.0175 -3.2740 12 6 4.4397 4.0968 -2.4109 13 6 4.2704 5.3790 -2.8950 14 6 4.0464 5.5841 -4.2502 15 8 3.8791 6.8433 -4.7289 16 6 3.8272 7.8407 -3.8232 17 1 3.9988 7.6304 -2.7779 18 6 3.5534 9.1365 -4.2338 19 7 3.3447 9.3928 -5.5071 20 14 3.4821 10.5185 -2.9790 21 1 4.8322 11.1174 -2.8250 22 1 2.5290 11.5588 -3.4421 23 1 3.0285 9.9778 -1.6724 24 6 3.9940 4.4983 -5.1145 25 6 4.1640 3.2185 -4.6243 26 6 2.4064 0.8800 -3.5377 27 6 1.0198 0.4329 -3.0668 28 1 0.5719 1.2290 -2.4698 29 6 0.1333 0.1677 -4.2881 30 8 1.1315 -0.7582 -2.2918 31 1 -0.3633 -1.0273 0.0265 32 1 -0.3634 0.5365 0.8764 33 1 -0.3633 0.4907 -0.9029 34 1 3.8001 -1.7029 0.7767 35 1 2.4833 -2.7180 1.4300 36 1 1.2975 -2.7262 -0.6750 37 1 3.0047 -2.7251 -1.2395 38 1 3.9206 -0.9320 -2.2945 39 1 4.0374 -0.0516 -0.7542 40 1 5.0197 0.9940 -3.5144 41 1 5.2258 1.6462 -1.8711 42 1 4.6151 3.9367 -1.3573 43 1 4.3080 6.2211 -2.2198 44 1 3.1535 10.2993 -5.7944 45 1 3.8204 4.6547 -6.1689 46 1 4.1238 2.3738 -5.2960 47 1 2.3231 1.8207 -4.0795 48 1 2.8357 0.1175 -4.1861 49 1 0.5819 -0.6154 -4.8995 50 1 -0.8550 -0.1514 -3.9573 51 1 0.0428 1.0808 -4.8764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279706964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:35 Heat of formation + Delta-G solvation = -81.029860 kcal Electronic energy + Delta-G solvation = -31661.924840 eV Core-core repulsion = 27527.271591 eV Total energy + Delta-G solvation = -4134.653250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11228 -39.19750 -38.35042 -37.01424 -35.45214 -33.46463 -32.35511 -31.50549 -30.96442 -30.22792 -29.91996 -27.45182 -26.62589 -25.37683 -24.59718 -22.89028 -22.19755 -22.05203 -21.62119 -20.30425 -19.72191 -18.01078 -17.09288 -16.99550 -16.61669 -16.38102 -15.68692 -15.50334 -14.98765 -14.71149 -14.55920 -14.49935 -14.20370 -13.90363 -13.67398 -13.57852 -13.39064 -13.27137 -12.96758 -12.77358 -12.69971 -12.56468 -12.51084 -12.20213 -12.02865 -11.91570 -11.67138 -11.55491 -11.41601 -11.30097 -11.22369 -11.02572 -10.85184 -10.75510 -10.57805 -10.45454 -10.27646 -9.71825 -9.63282 -9.35416 -8.86017 -8.43042 -8.19594 -7.21489 -6.47537 -4.06278 2.16899 2.23737 3.11177 3.12793 3.16976 3.17627 3.69793 3.73382 3.95065 4.15932 4.40723 4.52826 4.58716 4.75203 4.76955 4.85666 4.99805 5.06313 5.13330 5.16119 5.19364 5.24332 5.29375 5.32059 5.34353 5.38188 5.40656 5.48159 5.52844 5.62552 5.63622 5.68493 5.70394 5.75791 5.81343 5.85056 5.87837 6.01128 6.02543 6.16889 6.17878 6.38481 6.65602 6.77036 6.83086 6.90751 6.92918 7.05191 7.20989 7.22663 7.37589 7.41817 7.79048 7.97615 8.98289 9.67768 10.70405 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.002464 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.024009 B =11361.060182 C =11736.801840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 H 0.096 0.904 4 O -0.375 6.375 5 C 0.051 3.949 6 C -0.145 4.145 7 C 0.106 3.894 8 C 0.031 3.969 9 N -0.526 5.526 10 C 0.114 3.886 11 C -0.182 4.182 12 C -0.048 4.048 13 C -0.235 4.235 14 C 0.157 3.843 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.193 4.193 25 C -0.069 4.069 26 C 0.018 3.982 27 C 0.092 3.908 28 H 0.070 0.930 29 C -0.144 4.144 30 O -0.361 6.361 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.270 0.730 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.039 0.961 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 -22.200 7.726 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.003 3.997 3 H 0.114 0.886 4 O -0.295 6.295 5 C -0.026 4.026 6 C -0.183 4.183 7 C 0.065 3.935 8 C -0.098 4.098 9 N -0.251 5.251 10 C -0.012 4.012 11 C -0.183 4.183 12 C -0.067 4.067 13 C -0.254 4.254 14 C 0.103 3.897 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.213 4.213 25 C -0.088 4.088 26 C -0.110 4.110 27 C 0.034 3.966 28 H 0.088 0.912 29 C -0.202 4.202 30 O -0.280 6.280 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.896 -21.637 7.834 23.193 hybrid contribution 0.639 0.327 -0.087 0.723 sum -2.257 -21.310 7.747 22.787 Atomic orbital electron populations 1.22007 0.94445 1.02390 1.02128 1.23175 0.95149 0.97019 0.84340 0.88592 1.88557 1.73322 1.37693 1.29937 1.23393 0.96381 0.88457 0.94326 1.23248 1.03318 0.95655 0.96046 1.22193 0.88581 0.95109 0.87586 1.22657 0.96221 0.91240 0.99637 1.62477 1.14773 1.23852 1.23959 1.20816 0.88766 0.92822 0.98817 1.19000 1.12497 0.93301 0.93497 1.20553 0.96478 0.91701 0.97935 1.21163 1.11012 0.97413 0.95805 1.19388 0.92164 0.86355 0.91838 1.83973 1.77914 1.10758 1.35395 1.21332 1.50105 0.85566 0.89779 0.89029 1.25290 0.96303 0.97684 0.97197 1.70034 1.43987 1.21302 1.14411 0.85717 0.78524 0.79751 0.79502 1.19868 1.20230 1.19129 1.20157 1.11223 0.90681 0.99219 1.20467 0.98636 0.95387 0.94290 1.22955 0.93396 1.02200 0.92435 1.22193 0.94986 0.86923 0.92463 0.91240 1.21816 0.99473 1.02767 0.96135 1.87255 1.59517 1.37367 1.43905 0.92401 0.92260 0.91209 0.91878 0.89723 0.89157 0.89457 0.94032 0.89498 0.94785 0.90677 0.87533 0.85586 0.91995 0.86625 0.87584 0.88143 0.94265 0.92034 0.91656 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.95 37.22 0.33 -1.32 16 2 C 0.06 0.70 3.45 -26.33 -0.09 0.61 16 3 H 0.10 1.25 7.87 -51.99 -0.41 0.84 16 4 O -0.38 -4.40 11.02 -35.23 -0.39 -4.79 16 5 C 0.05 0.43 7.32 38.22 0.28 0.71 16 6 C -0.14 -1.21 6.28 -24.55 -0.15 -1.37 16 7 C 0.11 1.12 0.79 -89.50 -0.07 1.04 16 8 C 0.03 0.33 3.96 -4.12 -0.02 0.31 16 9 N -0.53 -6.58 4.70 -236.09 -1.11 -7.69 16 10 C 0.11 1.49 5.11 -4.98 -0.03 1.47 16 11 C -0.18 -2.96 4.90 -104.57 -0.51 -3.47 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 13 C -0.23 -5.01 9.17 -39.40 -0.36 -5.37 16 14 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 15 O -0.18 -5.00 9.76 0.06 0.00 -5.00 16 16 C -0.39 -10.85 9.49 30.89 0.29 -10.56 16 17 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.12 13.67 55.48 0.76 -24.37 16 20 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.19 -3.96 9.99 -39.40 -0.39 -4.35 16 25 C -0.07 -1.17 7.88 -39.61 -0.31 -1.48 16 26 C 0.02 0.22 4.59 -3.63 -0.02 0.20 16 27 C 0.09 1.03 2.96 -26.55 -0.08 0.95 16 28 H 0.07 0.85 6.92 -51.86 -0.36 0.49 16 29 C -0.14 -1.36 9.57 37.28 0.36 -1.00 16 30 O -0.36 -4.12 8.57 -35.01 -0.30 -4.42 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.76 5.92 -51.93 -0.31 0.45 16 34 H 0.06 0.47 7.80 -51.75 -0.40 0.06 16 35 H 0.08 0.57 8.17 -51.76 -0.42 0.15 16 36 H 0.09 0.76 8.11 -52.11 -0.42 0.34 16 37 H 0.09 0.61 7.83 -52.05 -0.41 0.21 16 38 H 0.04 0.42 7.95 -51.85 -0.41 0.01 16 39 H 0.09 0.89 7.37 -51.84 -0.38 0.51 16 40 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 41 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.13 2.72 5.64 -52.48 -0.30 2.43 16 44 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 46 H 0.11 1.52 7.96 -52.49 -0.42 1.10 16 47 H 0.10 1.37 5.80 -52.00 -0.30 1.06 16 48 H 0.04 0.46 8.13 -51.98 -0.42 0.04 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -30.39 396.70 -9.76 -40.15 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.17 Total: 5.19 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.51 Total: -20.43 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: -0.35 Total: -32.06 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.69 Total: -14.21 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.39 -9.76 -40.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279706964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.883 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds