Wall clock time and date at job start Wed Apr 1 2020 04:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.89720 * 2 1 4 4 O 1.43891 * 109.91130 * 238.72661 * 2 1 3 5 5 C 1.44425 * 106.99589 * 267.00469 * 4 2 1 6 6 C 1.55103 * 103.55382 * 320.26040 * 5 4 2 7 7 C 1.53576 * 109.90712 * 121.07591 * 2 1 3 8 8 C 1.52471 * 110.46395 * 235.64946 * 7 2 1 9 9 N 1.47135 * 109.29744 * 178.15753 * 8 7 2 10 10 C 1.46895 * 111.00066 * 178.70650 * 9 8 7 11 11 C 1.50703 * 109.47160 * 189.57476 * 10 9 8 12 12 C 1.38306 * 119.92975 * 270.29629 * 11 10 9 13 13 C 1.38104 * 120.06267 * 180.29756 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.43007 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31550 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99577 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47269 * 89.99793 * 20 18 16 22 22 H 1.48498 * 109.47209 * 210.00407 * 20 18 16 23 23 H 1.48506 * 109.47266 * 329.99845 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 C 1.47022 * 110.67050 * 302.42599 * 9 8 7 27 27 C 1.53094 * 109.38833 * 59.09492 * 26 9 8 28 28 H 1.08997 * 109.51047 * 62.57303 * 27 26 9 29 29 C 1.53005 * 109.51460 * 182.73534 * 27 26 9 30 30 O 1.42317 * 110.58438 * 358.70072 * 7 2 1 31 31 H 1.08996 * 109.47455 * 298.92414 * 1 2 3 32 32 H 1.09004 * 109.46675 * 58.92031 * 1 2 3 33 33 H 1.08997 * 109.47144 * 178.92189 * 1 2 3 34 34 H 1.09000 * 110.61007 * 78.77960 * 5 4 2 35 35 H 1.09005 * 110.60239 * 201.74713 * 5 4 2 36 36 H 1.09001 * 110.93027 * 278.44641 * 6 5 4 37 37 H 1.08997 * 110.93455 * 154.78736 * 6 5 4 38 38 H 1.08997 * 109.50389 * 58.21199 * 8 7 2 39 39 H 1.08995 * 109.49991 * 298.10037 * 8 7 2 40 40 H 1.09007 * 109.47386 * 69.57566 * 10 9 8 41 41 H 1.08998 * 109.47184 * 309.57678 * 10 9 8 42 42 H 1.07990 * 119.96779 * 0.02562 * 12 11 10 43 43 H 1.08000 * 120.02708 * 179.69965 * 13 12 11 44 44 H 0.97006 * 119.99724 * 179.97438 * 19 18 16 45 45 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 46 46 H 1.08006 * 119.96521 * 180.02562 * 25 24 14 47 47 H 1.09006 * 109.48545 * 179.07417 * 26 9 8 48 48 H 1.09005 * 109.48456 * 299.12012 * 26 9 8 49 49 H 1.08995 * 109.47324 * 60.00274 * 29 27 26 50 50 H 1.08997 * 109.46849 * 179.97438 * 29 27 26 51 51 H 1.08999 * 109.47157 * 300.00265 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 8 2.0201 -0.7023 -1.1563 5 6 2.2317 -2.0745 -0.7585 6 6 2.8291 -1.9515 0.6675 7 6 2.0529 -0.7454 1.2368 8 6 2.9923 0.1477 2.0397 9 7 3.4426 -0.5748 3.2398 10 6 4.3759 0.2421 4.0269 11 6 4.9940 -0.6042 5.1098 12 6 4.3832 -0.6955 6.3474 13 6 4.9505 -1.4654 7.3437 14 6 6.1291 -2.1576 7.0983 15 8 6.6859 -2.9200 8.0738 16 6 6.1095 -2.8723 9.2918 17 1 5.1976 -2.3120 9.4362 18 6 6.6876 -3.5428 10.3590 19 7 7.7981 -4.2257 10.1830 20 14 5.8888 -3.4774 12.0463 21 1 4.9274 -4.6009 12.1827 22 1 6.9349 -3.5909 13.0940 23 1 5.1688 -2.1881 12.2035 24 6 6.7367 -2.0687 5.8526 25 6 6.1678 -1.2924 4.8624 26 6 2.2931 -0.9942 4.0549 27 6 1.3820 -1.8990 3.2211 28 1 1.9254 -2.8000 2.9366 29 6 0.1503 -2.2820 4.0441 30 8 0.9709 -1.1964 2.0437 31 1 -0.3634 0.4970 0.8994 32 1 -0.3633 0.5305 -0.8802 33 1 -0.3633 -1.0275 -0.0193 34 1 1.2865 -2.6167 -0.7331 35 1 2.9379 -2.5638 -1.4294 36 1 3.8979 -1.7420 0.6252 37 1 2.6330 -2.8512 1.2508 38 1 2.4663 1.0549 2.3372 39 1 3.8554 0.4108 1.4283 40 1 3.8374 1.0749 4.4794 41 1 5.1598 0.6277 3.3751 42 1 3.4641 -0.1608 6.5361 43 1 4.4756 -1.5324 8.3114 44 1 8.2028 -4.6944 10.9297 45 1 7.6531 -2.6063 5.6586 46 1 6.6396 -1.2232 3.8933 47 1 2.6472 -1.5409 4.9289 48 1 1.7356 -0.1147 4.3772 49 1 -0.3933 -1.3802 4.3258 50 1 -0.4980 -2.9257 3.4496 51 1 0.4645 -2.8125 4.9429 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279706967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:40 Heat of formation + Delta-G solvation = -81.845875 kcal Electronic energy + Delta-G solvation = -31526.982179 eV Core-core repulsion = 27392.293545 eV Total energy + Delta-G solvation = -4134.688635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.08962 -39.20966 -38.37626 -36.96004 -35.37920 -33.40307 -32.36162 -31.50076 -30.91477 -30.23848 -29.80828 -27.74224 -26.56128 -25.50729 -24.44829 -22.83848 -22.53689 -21.96080 -21.26225 -20.28333 -19.55901 -18.01631 -17.18825 -17.01753 -16.77594 -16.41635 -15.64363 -15.40028 -14.82361 -14.64219 -14.58698 -14.43390 -14.32494 -13.91433 -13.79402 -13.60918 -13.48716 -13.32224 -13.00510 -12.75647 -12.67264 -12.45618 -12.37733 -12.11757 -11.94651 -11.86056 -11.76167 -11.53038 -11.46634 -11.27799 -11.20362 -10.97642 -10.86874 -10.68157 -10.64787 -10.46214 -10.39361 -9.90177 -9.63733 -9.36927 -8.87182 -8.39949 -8.19607 -7.21617 -6.48469 -4.07421 2.17812 2.22736 3.09475 3.10785 3.15539 3.33587 3.60427 3.77052 3.93442 4.27795 4.45097 4.56992 4.60445 4.73718 4.87141 4.97689 4.98358 5.04946 5.06891 5.13189 5.16012 5.21107 5.25119 5.31657 5.37906 5.41618 5.42226 5.48071 5.55311 5.60470 5.69935 5.70947 5.75947 5.79082 5.82516 5.84402 5.89464 5.94474 6.02136 6.11182 6.17696 6.38224 6.55078 6.66517 6.84715 6.87166 6.96206 7.05086 7.11281 7.22935 7.35199 7.40839 7.78958 7.96388 8.97155 9.67198 10.69473 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.002297 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.857553 B =12188.421314 C =12705.763964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.088 3.912 3 H 0.100 0.900 4 O -0.371 6.371 5 C 0.046 3.954 6 C -0.166 4.166 7 C 0.096 3.904 8 C 0.035 3.965 9 N -0.527 5.527 10 C 0.114 3.886 11 C -0.180 4.180 12 C -0.066 4.066 13 C -0.234 4.234 14 C 0.156 3.844 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.194 4.194 25 C -0.051 4.051 26 C 0.022 3.978 27 C 0.087 3.913 28 H 0.070 0.930 29 C -0.143 4.143 30 O -0.363 6.363 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.270 0.730 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.038 0.962 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.390 7.295 -17.288 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.030 3.970 3 H 0.118 0.882 4 O -0.290 6.290 5 C -0.030 4.030 6 C -0.204 4.204 7 C 0.056 3.944 8 C -0.093 4.093 9 N -0.251 5.251 10 C -0.012 4.012 11 C -0.182 4.182 12 C -0.084 4.084 13 C -0.254 4.254 14 C 0.102 3.898 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.213 4.213 25 C -0.070 4.070 26 C -0.106 4.106 27 C 0.029 3.971 28 H 0.088 0.912 29 C -0.201 4.201 30 O -0.283 6.283 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.143 0.857 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.129 0.871 47 H 0.116 0.884 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.935 6.702 -17.533 22.796 hybrid contribution -0.588 0.597 1.560 1.771 sum -13.524 7.300 -15.973 22.166 Atomic orbital electron populations 1.21941 0.94456 1.03008 1.01835 1.22630 0.95194 0.96024 0.83143 0.88230 1.88951 1.86091 1.21208 1.32746 1.23590 0.99940 0.84054 0.95428 1.23548 1.01329 0.99252 0.96244 1.22293 0.87018 0.93960 0.91146 1.22637 0.98435 0.95016 0.93198 1.62333 1.14861 1.41145 1.06780 1.20809 0.94330 0.92637 0.93461 1.19019 0.98605 1.06019 0.94539 1.20581 0.97811 0.97374 0.92676 1.21111 0.99011 1.04564 1.00673 1.19399 0.91300 0.89318 0.89740 1.83982 1.51106 1.55174 1.17783 1.21314 1.08840 1.33670 0.83011 0.89106 1.25288 0.95959 0.95944 0.99306 1.70036 1.17634 1.29599 1.32386 0.85722 0.78584 0.79025 0.80163 1.19861 1.20222 1.19218 1.20217 1.02594 1.06050 0.92475 1.20436 0.94528 0.94946 0.97120 1.22870 0.91151 0.99042 0.97493 1.22261 0.95330 0.94539 0.84944 0.91226 1.21737 0.96799 1.02041 0.99510 1.87911 1.30607 1.74522 1.35213 0.91212 0.92461 0.91885 0.92121 0.88910 0.89198 0.89386 0.94167 0.89452 0.94871 0.90656 0.88039 0.85666 0.91987 0.86582 0.87126 0.88439 0.94424 0.91982 0.91732 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.56 37.16 0.32 -1.09 16 2 C 0.09 0.86 3.76 -26.43 -0.10 0.76 16 3 H 0.10 0.86 7.68 -51.93 -0.40 0.46 16 4 O -0.37 -4.04 11.20 -35.23 -0.39 -4.43 16 5 C 0.05 0.43 7.68 38.27 0.29 0.72 16 6 C -0.17 -1.65 5.98 -24.93 -0.15 -1.80 16 7 C 0.10 0.99 0.96 -89.90 -0.09 0.90 16 8 C 0.04 0.37 4.00 -3.97 -0.02 0.36 16 9 N -0.53 -6.44 4.52 -236.04 -1.07 -7.51 16 10 C 0.11 1.48 5.11 -4.98 -0.03 1.45 16 11 C -0.18 -2.93 4.90 -104.57 -0.51 -3.44 16 12 C -0.07 -1.14 7.90 -39.61 -0.31 -1.46 16 13 C -0.23 -4.92 9.17 -39.40 -0.36 -5.28 16 14 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 15 O -0.18 -4.99 9.76 0.04 0.00 -4.99 16 16 C -0.39 -10.80 9.49 30.89 0.29 -10.50 16 17 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 20 Si 0.94 20.25 29.55 -169.99 -5.02 15.22 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.19 -4.01 9.99 -39.40 -0.39 -4.41 16 25 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 26 C 0.02 0.27 4.53 -3.71 -0.02 0.26 16 27 C 0.09 0.96 3.15 -26.68 -0.08 0.87 16 28 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 29 C -0.14 -1.35 9.57 37.16 0.36 -0.99 16 30 O -0.36 -4.03 8.11 -35.23 -0.29 -4.32 16 31 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.92 7.77 -51.93 -0.40 0.52 16 37 H 0.09 0.92 6.21 -51.93 -0.32 0.59 16 38 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.85 8.01 -51.93 -0.42 0.43 16 40 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 41 H 0.08 0.90 8.00 -51.93 -0.42 0.48 16 42 H 0.10 1.54 7.97 -52.49 -0.42 1.12 16 43 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 44 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 45 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 46 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 47 H 0.10 1.35 5.95 -51.93 -0.31 1.04 16 48 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -30.00 396.92 -9.75 -39.75 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -8.18 Total: 5.09 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.54 Total: -20.52 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: -0.31 Total: -31.79 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.68 Total: -13.74 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.00 -9.75 -39.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279706967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.092 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds