Wall clock time and date at job start Wed Apr 1 2020 04:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.89720 * 2 1 4 4 O 1.43891 * 109.91130 * 238.72661 * 2 1 3 5 5 C 1.44425 * 106.99589 * 267.00469 * 4 2 1 6 6 C 1.55103 * 103.55382 * 320.26040 * 5 4 2 7 7 C 1.53576 * 109.90712 * 121.07591 * 2 1 3 8 8 C 1.52471 * 110.46395 * 235.64946 * 7 2 1 9 9 N 1.47135 * 109.29744 * 178.15753 * 8 7 2 10 10 C 1.46895 * 111.00066 * 178.70650 * 9 8 7 11 11 C 1.50703 * 109.47160 * 189.57476 * 10 9 8 12 12 C 1.38306 * 119.92975 * 270.29629 * 11 10 9 13 13 C 1.38104 * 120.06267 * 180.29756 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.43007 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31550 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99577 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47269 * 89.99793 * 20 18 16 22 22 H 1.48498 * 109.47209 * 210.00407 * 20 18 16 23 23 H 1.48506 * 109.47266 * 329.99845 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 C 1.47022 * 110.67050 * 302.42599 * 9 8 7 27 27 C 1.53094 * 109.38833 * 59.09492 * 26 9 8 28 28 H 1.08997 * 109.51047 * 62.57303 * 27 26 9 29 29 C 1.53005 * 109.51460 * 182.73534 * 27 26 9 30 30 O 1.42317 * 110.58438 * 358.70072 * 7 2 1 31 31 H 1.08996 * 109.47455 * 298.92414 * 1 2 3 32 32 H 1.09004 * 109.46675 * 58.92031 * 1 2 3 33 33 H 1.08997 * 109.47144 * 178.92189 * 1 2 3 34 34 H 1.09000 * 110.61007 * 78.77960 * 5 4 2 35 35 H 1.09005 * 110.60239 * 201.74713 * 5 4 2 36 36 H 1.09001 * 110.93027 * 278.44641 * 6 5 4 37 37 H 1.08997 * 110.93455 * 154.78736 * 6 5 4 38 38 H 1.08997 * 109.50389 * 58.21199 * 8 7 2 39 39 H 1.08995 * 109.49991 * 298.10037 * 8 7 2 40 40 H 1.09007 * 109.47386 * 69.57566 * 10 9 8 41 41 H 1.08998 * 109.47184 * 309.57678 * 10 9 8 42 42 H 1.07990 * 119.96779 * 0.02562 * 12 11 10 43 43 H 1.08000 * 120.02708 * 179.69965 * 13 12 11 44 44 H 0.97006 * 119.99724 * 179.97438 * 19 18 16 45 45 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 46 46 H 1.08006 * 119.96521 * 180.02562 * 25 24 14 47 47 H 1.09006 * 109.48545 * 179.07417 * 26 9 8 48 48 H 1.09005 * 109.48456 * 299.12012 * 26 9 8 49 49 H 1.08995 * 109.47324 * 60.00274 * 29 27 26 50 50 H 1.08997 * 109.46849 * 179.97438 * 29 27 26 51 51 H 1.08999 * 109.47157 * 300.00265 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 8 2.0201 -0.7023 -1.1563 5 6 2.2317 -2.0745 -0.7585 6 6 2.8291 -1.9515 0.6675 7 6 2.0529 -0.7454 1.2368 8 6 2.9923 0.1477 2.0397 9 7 3.4426 -0.5748 3.2398 10 6 4.3759 0.2421 4.0269 11 6 4.9940 -0.6042 5.1098 12 6 4.3832 -0.6955 6.3474 13 6 4.9505 -1.4654 7.3437 14 6 6.1291 -2.1576 7.0983 15 8 6.6859 -2.9200 8.0738 16 6 6.1095 -2.8723 9.2918 17 1 5.1976 -2.3120 9.4362 18 6 6.6876 -3.5428 10.3590 19 7 7.7981 -4.2257 10.1830 20 14 5.8888 -3.4774 12.0463 21 1 4.9274 -4.6009 12.1827 22 1 6.9349 -3.5909 13.0940 23 1 5.1688 -2.1881 12.2035 24 6 6.7367 -2.0687 5.8526 25 6 6.1678 -1.2924 4.8624 26 6 2.2931 -0.9942 4.0549 27 6 1.3820 -1.8990 3.2211 28 1 1.9254 -2.8000 2.9366 29 6 0.1503 -2.2820 4.0441 30 8 0.9709 -1.1964 2.0437 31 1 -0.3634 0.4970 0.8994 32 1 -0.3633 0.5305 -0.8802 33 1 -0.3633 -1.0275 -0.0193 34 1 1.2865 -2.6167 -0.7331 35 1 2.9379 -2.5638 -1.4294 36 1 3.8979 -1.7420 0.6252 37 1 2.6330 -2.8512 1.2508 38 1 2.4663 1.0549 2.3372 39 1 3.8554 0.4108 1.4283 40 1 3.8374 1.0749 4.4794 41 1 5.1598 0.6277 3.3751 42 1 3.4641 -0.1608 6.5361 43 1 4.4756 -1.5324 8.3114 44 1 8.2028 -4.6944 10.9297 45 1 7.6531 -2.6063 5.6586 46 1 6.6396 -1.2232 3.8933 47 1 2.6472 -1.5409 4.9289 48 1 1.7356 -0.1147 4.3772 49 1 -0.3933 -1.3802 4.3258 50 1 -0.4980 -2.9257 3.4496 51 1 0.4645 -2.8125 4.9429 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279706967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:39 Heat of formation + Delta-G solvation = -100.602467 kcal Electronic energy + Delta-G solvation = -31527.795526 eV Core-core repulsion = 27392.293545 eV Total energy + Delta-G solvation = -4135.501981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.92344 -40.79896 -39.39537 -38.39358 -36.53848 -34.31671 -34.20026 -32.28841 -31.97461 -31.79861 -30.92390 -28.64149 -27.79218 -27.17902 -25.51294 -23.78439 -23.56334 -23.41997 -22.18666 -21.62100 -20.41468 -19.83317 -18.81707 -17.98513 -17.59846 -17.30542 -16.69781 -16.56574 -16.29689 -15.97075 -15.87584 -15.53031 -15.43371 -15.24151 -15.05056 -14.88062 -14.59302 -14.34735 -14.14553 -14.08030 -13.76440 -13.61117 -13.39902 -13.16347 -12.99784 -12.91042 -12.77423 -12.71274 -12.53871 -12.41581 -12.37079 -12.27393 -12.14834 -12.10764 -11.80282 -11.74411 -11.25542 -11.17079 -10.79669 -10.66386 -10.51101 -9.75695 -9.36249 -8.88974 -8.47180 -6.15184 0.60706 0.67312 1.34584 1.43536 1.51880 2.17290 2.52536 2.64076 2.89142 2.97774 3.24997 3.48106 3.53390 3.67602 3.81071 3.85631 3.98976 4.03572 4.10720 4.16628 4.21696 4.26168 4.29942 4.35623 4.38507 4.43743 4.49811 4.60583 4.64181 4.66028 4.67765 4.72546 4.80836 4.82824 4.84760 4.88923 5.01687 5.06855 5.08921 5.09951 5.13970 5.15199 5.25029 5.30605 5.38507 5.57503 5.71918 5.77891 5.80510 5.98641 6.00979 6.03544 6.23879 6.28262 6.97739 7.79183 8.76098 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.002297 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.857553 B =12188.421314 C =12705.763964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.087 3.913 3 H 0.113 0.887 4 O -0.385 6.385 5 C 0.047 3.953 6 C -0.164 4.164 7 C 0.094 3.906 8 C 0.038 3.962 9 N -0.535 5.535 10 C 0.116 3.884 11 C -0.152 4.152 12 C -0.060 4.060 13 C -0.241 4.241 14 C 0.115 3.885 15 O -0.233 6.233 16 C -0.412 4.412 17 H 0.101 0.899 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.017 2.983 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.253 1.253 24 C -0.206 4.206 25 C -0.045 4.045 26 C 0.025 3.975 27 C 0.089 3.911 28 H 0.060 0.940 29 C -0.140 4.140 30 O -0.367 6.367 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.117 0.883 44 H 0.272 0.728 45 H 0.110 0.890 46 H 0.145 0.855 47 H 0.079 0.921 48 H 0.042 0.958 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.488 9.509 -18.996 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.029 3.971 3 H 0.131 0.869 4 O -0.304 6.304 5 C -0.029 4.029 6 C -0.202 4.202 7 C 0.054 3.946 8 C -0.089 4.089 9 N -0.259 5.259 10 C -0.010 4.010 11 C -0.153 4.153 12 C -0.078 4.078 13 C -0.261 4.261 14 C 0.065 3.935 15 O -0.140 6.140 16 C -0.488 4.488 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.837 3.163 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.225 4.225 25 C -0.064 4.064 26 C -0.104 4.104 27 C 0.031 3.969 28 H 0.078 0.922 29 C -0.198 4.198 30 O -0.287 6.287 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.150 0.850 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.129 0.871 46 H 0.162 0.838 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.067 8.952 -19.299 26.069 hybrid contribution -0.049 0.072 1.719 1.722 sum -15.116 9.023 -17.580 24.878 Atomic orbital electron populations 1.21892 0.94161 1.02470 1.02235 1.22731 0.95452 0.96452 0.82493 0.86913 1.88939 1.86217 1.21874 1.33400 1.23657 1.00324 0.83631 0.95331 1.23509 1.01227 0.98885 0.96560 1.22373 0.86897 0.94093 0.91271 1.22675 0.99002 0.94956 0.92311 1.62249 1.15008 1.41494 1.07143 1.20828 0.95216 0.92117 0.92874 1.19503 0.97221 1.03724 0.94897 1.20880 0.98501 0.96303 0.92161 1.21191 0.98412 1.05037 1.01431 1.19936 0.92858 0.90644 0.90079 1.83946 1.53122 1.58146 1.18766 1.21797 1.09387 1.34042 0.83575 0.88146 1.26574 0.96543 0.95316 1.03638 1.70184 1.20006 1.31901 1.33836 0.84605 0.77718 0.79772 0.74244 1.18789 1.19654 1.17663 1.20456 1.02774 1.06833 0.92422 1.20810 0.94660 0.93424 0.97469 1.22824 0.91325 0.99146 0.97062 1.22228 0.95693 0.93924 0.85021 0.92175 1.21721 0.96299 1.02345 0.99399 1.87920 1.31045 1.74495 1.35190 0.91108 0.91724 0.92887 0.92065 0.87554 0.89317 0.90155 0.93443 0.88220 0.93511 0.88581 0.85027 0.86554 0.91873 0.87147 0.83764 0.90263 0.93950 0.91577 0.91127 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.56 71.98 0.62 -1.77 16 2 C 0.09 1.44 3.76 30.79 0.12 1.56 16 3 H 0.11 1.57 7.68 -2.38 -0.02 1.55 16 4 O -0.38 -7.45 11.20 -148.98 -1.67 -9.12 16 5 C 0.05 0.77 7.68 72.70 0.56 1.32 16 6 C -0.16 -2.90 5.98 31.76 0.19 -2.71 16 7 C 0.09 1.66 0.96 -10.33 -0.01 1.65 16 8 C 0.04 0.66 4.00 86.08 0.34 1.00 16 9 N -0.53 -11.14 4.52 -900.70 -4.07 -15.21 16 10 C 0.12 2.50 5.11 85.56 0.44 2.93 16 11 C -0.15 -4.47 4.90 -19.83 -0.10 -4.57 16 12 C -0.06 -1.96 7.90 22.25 0.18 -1.79 16 13 C -0.24 -10.24 9.17 22.39 0.21 -10.04 16 14 C 0.12 5.67 6.65 22.58 0.15 5.82 16 15 O -0.23 -13.99 9.76 -22.77 -0.22 -14.21 16 16 C -0.41 -23.86 9.49 67.92 0.64 -23.21 16 17 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 18 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 19 N -0.92 -56.51 13.67 21.61 0.30 -56.22 16 20 Si 1.02 42.60 29.55 68.60 2.03 44.63 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 24 C -0.21 -8.63 9.99 22.39 0.22 -8.41 16 25 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 26 C 0.02 0.53 4.53 86.31 0.39 0.92 16 27 C 0.09 1.78 3.15 30.63 0.10 1.88 16 28 H 0.06 1.32 6.40 -2.39 -0.02 1.31 16 29 C -0.14 -2.39 9.57 71.98 0.69 -1.70 16 30 O -0.37 -7.27 8.11 -148.98 -1.21 -8.48 16 31 H 0.07 1.11 7.85 -2.39 -0.02 1.09 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 0.94 7.90 -2.39 -0.02 0.92 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.09 1.59 7.77 -2.39 -0.02 1.57 16 37 H 0.08 1.55 6.21 -2.39 -0.01 1.53 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 1.50 8.01 -2.39 -0.02 1.48 16 40 H 0.05 0.94 8.07 -2.38 -0.02 0.92 16 41 H 0.10 1.76 8.00 -2.39 -0.02 1.74 16 42 H 0.13 3.54 7.97 -2.92 -0.02 3.52 16 43 H 0.12 5.06 5.64 -2.91 -0.02 5.04 16 44 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 45 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 46 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 47 H 0.08 2.01 5.95 -2.38 -0.01 2.00 16 48 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -69.28 396.92 1.48 -67.79 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.92 Total: 30.03 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 5.41 Total: -39.21 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -3.77 Total: -71.43 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -3.10 Total: -31.81 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -69.28 1.48 -67.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279706967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.809 kcal (2) G-P(sol) polarization free energy of solvation -69.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds