Wall clock time and date at job start Wed Apr 1 2020 05:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47212 * 2 1 4 4 C 1.53004 * 109.46819 * 119.99936 * 2 1 3 5 5 O 1.42897 * 109.46664 * 180.75705 * 4 2 1 6 6 N 1.46499 * 109.46896 * 239.99924 * 2 1 3 7 7 C 1.46496 * 119.99970 * 118.17515 * 6 2 1 8 8 C 1.52999 * 109.47353 * 89.99921 * 7 6 2 9 9 C 1.53777 * 113.61206 * 274.13367 * 8 7 6 10 10 C 1.53950 * 87.02133 * 220.04914 * 9 8 7 11 11 C 1.53776 * 87.11006 * 25.36274 * 10 9 8 12 12 C 1.34778 * 119.99848 * 298.16840 * 6 2 1 13 13 O 1.21280 * 120.00545 * 355.12412 * 12 6 2 14 14 C 1.50708 * 119.99785 * 175.11961 * 12 6 2 15 15 C 1.50695 * 109.46913 * 184.94470 * 14 12 6 16 16 C 1.38315 * 119.96858 * 269.72221 * 15 14 12 17 17 C 1.38285 * 120.14192 * 179.77084 * 16 15 14 18 18 C 1.38120 * 120.06700 * 0.50836 * 17 16 15 19 19 C 1.38858 * 119.92786 * 359.74787 * 18 17 16 20 20 O 1.35757 * 120.06558 * 179.97438 * 19 18 17 21 21 C 1.34829 * 117.00036 * 5.72007 * 20 19 18 22 22 H 1.07996 * 120.00119 * 5.25354 * 21 20 19 23 23 C 1.38651 * 119.99640 * 185.25899 * 21 20 19 24 24 N 1.31551 * 120.00525 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99652 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47041 * 89.99927 * 25 23 21 27 27 H 1.48502 * 109.47052 * 209.99972 * 25 23 21 28 28 H 1.48495 * 109.47314 * 329.99658 * 25 23 21 29 29 C 1.38084 * 119.96565 * 90.00523 * 15 14 12 30 30 H 1.08995 * 109.46980 * 305.36167 * 1 2 3 31 31 H 1.09001 * 109.47099 * 65.36251 * 1 2 3 32 32 H 1.09005 * 109.47245 * 185.35833 * 1 2 3 33 33 H 1.09000 * 109.46981 * 60.76524 * 4 2 1 34 34 H 1.08995 * 109.47210 * 300.76106 * 4 2 1 35 35 H 0.96702 * 114.00055 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.47055 * 209.99831 * 7 6 2 37 37 H 1.08995 * 109.47210 * 329.99241 * 7 6 2 38 38 H 1.08998 * 112.85042 * 45.32947 * 8 7 6 39 39 H 1.09004 * 113.61945 * 334.57020 * 9 8 7 40 40 H 1.09008 * 113.61410 * 105.46811 * 9 8 7 41 41 H 1.09004 * 113.53594 * 270.80974 * 10 9 8 42 42 H 1.09001 * 113.66900 * 139.93727 * 10 9 8 43 43 H 1.09007 * 113.61614 * 220.08361 * 11 10 9 44 44 H 1.09002 * 113.68989 * 89.20272 * 11 10 9 45 45 H 1.09005 * 109.46974 * 304.94564 * 14 12 6 46 46 H 1.08999 * 109.47124 * 64.94774 * 14 12 6 47 47 H 1.08002 * 119.92946 * 0.02562 * 16 15 14 48 48 H 1.07997 * 119.96467 * 180.25919 * 17 16 15 49 49 H 1.07999 * 120.03405 * 179.72679 * 18 17 16 50 50 H 0.96998 * 120.00387 * 180.02562 * 24 23 21 51 51 H 1.07998 * 120.03284 * 359.94868 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4688 -0.7059 1.2582 6 7 2.0183 -0.6906 -1.1962 7 6 2.8272 0.0324 -2.1805 8 6 4.3077 -0.0937 -1.8157 9 6 4.7861 0.9648 -0.8080 10 6 6.0796 1.0541 -1.6381 11 6 5.2519 0.5620 -2.8370 12 6 1.7234 -1.9912 -1.3909 13 8 1.1300 -2.6133 -0.5355 14 6 2.1310 -2.6727 -2.6718 15 6 1.5815 -4.0757 -2.6913 16 6 2.3302 -5.1182 -2.1758 17 6 1.8275 -6.4064 -2.1875 18 6 0.5797 -6.6574 -2.7238 19 6 -0.1723 -5.6138 -3.2469 20 8 -1.3989 -5.8574 -3.7752 21 6 -1.8790 -7.1115 -3.6551 22 1 -1.3322 -7.8466 -3.0832 23 6 -3.0747 -7.4575 -4.2658 24 7 -3.7410 -6.5620 -4.9621 25 14 -3.7396 -9.1952 -4.0999 26 1 -4.6140 -9.2785 -2.9026 27 1 -4.5249 -9.5425 -5.3115 28 1 -2.6085 -10.1462 -3.9539 29 6 0.3333 -4.3202 -3.2289 30 1 -0.3633 0.5947 0.8380 31 1 -0.3633 0.4284 -0.9341 32 1 -0.3634 -1.0232 0.0960 33 1 1.6879 -1.7528 1.2424 34 1 1.6655 -0.2154 2.1392 35 1 3.8622 -1.1463 2.0240 36 1 2.6596 -0.3917 -3.1705 37 1 2.5420 1.0844 -2.1830 38 1 4.5925 -1.1113 -1.5483 39 1 4.1943 1.8801 -0.8220 40 1 4.9379 0.5731 0.1979 41 1 6.8497 0.3509 -1.3210 42 1 6.4555 2.0706 -1.7547 43 1 5.7792 -0.1544 -3.4671 44 1 4.7873 1.3659 -3.4079 45 1 1.7356 -2.1158 -3.5214 46 1 3.2186 -2.7076 -2.7347 47 1 3.3079 -4.9251 -1.7596 48 1 2.4128 -7.2176 -1.7804 49 1 0.1894 -7.6643 -2.7367 50 1 -4.5777 -6.8039 -5.3890 51 1 -0.2493 -3.5064 -3.6347 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280912975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:14 Heat of formation + Delta-G solvation = -67.848403 kcal Electronic energy + Delta-G solvation = -31332.657529 eV Core-core repulsion = 27198.575870 eV Total energy + Delta-G solvation = -4134.081659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.47947 -38.98892 -38.56022 -37.06270 -36.29285 -35.17991 -32.82956 -32.20665 -31.32116 -29.10981 -28.04098 -26.93516 -26.07225 -25.70942 -25.17391 -23.22992 -22.45945 -21.52646 -20.66344 -19.53121 -18.74179 -17.57633 -17.42656 -17.01092 -16.76547 -16.25773 -15.74505 -15.45462 -15.01351 -14.67868 -14.51363 -14.36110 -14.17341 -13.96697 -13.55328 -13.37521 -13.27698 -13.21043 -12.74296 -12.63002 -12.45234 -12.36687 -12.20820 -12.14260 -12.01375 -11.77367 -11.61009 -11.37960 -11.21768 -11.06937 -10.85126 -10.74396 -10.69349 -10.54875 -10.47633 -10.39462 -10.27530 -10.17065 -9.30249 -9.21243 -8.76989 -8.55783 -7.97082 -7.13720 -6.38292 -3.96941 2.18022 2.47688 2.85476 3.02427 3.17308 3.17831 3.22241 4.02050 4.04744 4.42025 4.45843 4.56505 4.61281 4.69035 4.84157 4.97404 5.04475 5.14170 5.15667 5.20424 5.25525 5.28003 5.30096 5.39840 5.47303 5.53246 5.54474 5.57928 5.59087 5.70328 5.71032 5.72500 5.79402 5.85831 5.90120 6.02150 6.09224 6.11371 6.20540 6.26757 6.35468 6.41943 6.66426 6.74564 6.99981 7.15218 7.35775 7.44376 7.46847 7.51556 7.53474 7.91410 8.07178 8.41820 9.07785 9.79538 10.80226 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.002417 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.281312 B =11580.003128 C =11979.366021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.157 3.843 3 H 0.085 0.915 4 C 0.054 3.946 5 O -0.564 6.564 6 N -0.606 5.606 7 C 0.120 3.880 8 C -0.119 4.119 9 C -0.127 4.127 10 C -0.145 4.145 11 C -0.138 4.138 12 C 0.523 3.477 13 O -0.519 6.519 14 C -0.094 4.094 15 C -0.030 4.030 16 C -0.194 4.194 17 C -0.075 4.075 18 C -0.231 4.231 19 C 0.155 3.845 20 O -0.181 6.181 21 C -0.389 4.389 22 H 0.090 0.910 23 C 0.038 3.962 24 N -0.865 5.865 25 Si 0.940 3.060 26 H -0.274 1.274 27 H -0.278 1.278 28 H -0.268 1.268 29 C -0.176 4.176 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.372 0.628 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.125 0.875 50 H 0.269 0.731 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.819 16.396 8.280 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.053 3.947 3 H 0.103 0.897 4 C -0.025 4.025 5 O -0.369 6.369 6 N -0.340 5.340 7 C -0.004 4.004 8 C -0.138 4.138 9 C -0.164 4.164 10 C -0.183 4.183 11 C -0.176 4.176 12 C 0.311 3.689 13 O -0.394 6.394 14 C -0.133 4.133 15 C -0.030 4.030 16 C -0.213 4.213 17 C -0.093 4.093 18 C -0.251 4.251 19 C 0.102 3.898 20 O -0.085 6.085 21 C -0.465 4.465 22 H 0.108 0.892 23 C -0.166 4.166 24 N -0.501 5.501 25 Si 0.765 3.235 26 H -0.199 1.199 27 H -0.203 1.203 28 H -0.192 1.192 29 C -0.196 4.196 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.218 0.782 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.124 0.876 49 H 0.143 0.857 50 H 0.079 0.921 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.988 16.535 7.920 24.326 hybrid contribution -0.200 -1.118 0.619 1.294 sum 15.788 15.416 8.539 23.661 Atomic orbital electron populations 1.22144 0.94108 1.04350 1.02151 1.20939 0.93945 0.95807 0.83985 0.89699 1.22738 0.81190 1.02231 0.96318 1.86463 1.19619 1.81235 1.49549 1.47908 1.53130 1.10423 1.22502 1.21656 0.89748 0.97023 0.91943 1.22909 0.93911 0.99908 0.97088 1.22922 0.95995 0.98105 0.99356 1.22846 0.97159 1.00943 0.97317 1.22940 0.97887 1.00353 0.96441 1.20618 0.78620 0.80832 0.88802 1.90653 1.40260 1.63854 1.44667 1.20648 1.02143 0.94479 0.96050 1.18684 0.93866 0.92440 0.98058 1.20329 1.00278 0.92859 1.07807 1.20673 0.94996 0.95953 0.97722 1.21169 0.96443 0.99720 1.07726 1.19281 0.85961 0.92974 0.91624 1.83986 1.25399 1.31832 1.67249 1.21297 1.05889 0.86113 1.33225 0.89214 1.25260 0.95759 0.99747 0.95795 1.70037 1.15158 1.33795 1.31112 0.85733 0.79144 0.80547 0.78119 1.19935 1.20314 1.19248 1.19924 0.96456 0.94728 1.08454 0.91821 0.91892 0.90256 0.90474 0.93877 0.78182 0.90129 0.90699 0.89015 0.91157 0.89982 0.90546 0.91974 0.91532 0.90204 0.88663 0.88579 0.88083 0.87590 0.85693 0.92145 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.07 37.16 0.34 -1.54 16 2 C 0.16 1.65 2.96 -67.93 -0.20 1.45 16 3 H 0.08 0.77 7.81 -51.93 -0.41 0.36 16 4 C 0.05 0.57 6.28 37.16 0.23 0.81 16 5 O -0.56 -5.42 11.16 -35.23 -0.39 -5.81 16 6 N -0.61 -6.86 2.30 -166.11 -0.38 -7.24 16 7 C 0.12 1.04 5.08 -4.04 -0.02 1.02 16 8 C -0.12 -0.99 3.96 -89.81 -0.36 -1.34 16 9 C -0.13 -1.01 7.18 -25.83 -0.19 -1.19 16 10 C -0.15 -1.04 8.09 -25.83 -0.21 -1.25 16 11 C -0.14 -0.97 7.64 -25.92 -0.20 -1.17 16 12 C 0.52 7.75 7.08 -10.98 -0.08 7.67 16 13 O -0.52 -9.67 12.33 5.56 0.07 -9.61 16 14 C -0.09 -1.33 4.40 -29.03 -0.13 -1.45 16 15 C -0.03 -0.56 4.38 -104.65 -0.46 -1.02 16 16 C -0.19 -3.61 9.70 -39.54 -0.38 -3.99 16 17 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 18 C -0.23 -5.33 9.13 -39.40 -0.36 -5.69 16 19 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 20 O -0.18 -5.35 9.76 0.03 0.00 -5.35 16 21 C -0.39 -11.22 9.44 30.88 0.29 -10.93 16 22 H 0.09 2.41 5.29 -52.49 -0.28 2.14 16 23 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 24 N -0.87 -25.96 13.67 55.48 0.76 -25.20 16 25 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 29 C -0.18 -3.93 9.65 -39.39 -0.38 -4.31 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.13 6.62 -51.93 -0.34 0.79 16 33 H 0.08 1.07 5.86 -51.93 -0.30 0.76 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.37 2.38 9.12 45.56 0.42 2.79 16 36 H 0.08 0.65 6.31 -51.93 -0.33 0.33 16 37 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.54 7.92 -51.93 -0.41 0.12 16 40 H 0.08 0.75 6.21 -51.92 -0.32 0.43 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 45 H 0.10 1.19 7.26 -51.93 -0.38 0.81 16 46 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 47 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 48 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 49 H 0.13 2.87 5.71 -52.49 -0.30 2.57 16 50 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 407.75 15.07 6.14 6.14 Total: -1.00 -34.20 407.75 -8.93 -43.13 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.26 Total: 8.04 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.85 Total: -20.17 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.38 Total: -32.45 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.32 Total: -20.76 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.20 -8.93 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280912975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.715 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds