Wall clock time and date at job start Wed Apr 1 2020 05:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47212 * 2 1 4 4 C 1.53004 * 109.46819 * 119.99936 * 2 1 3 5 5 O 1.42897 * 109.46664 * 180.75705 * 4 2 1 6 6 N 1.46499 * 109.46896 * 239.99924 * 2 1 3 7 7 C 1.46496 * 119.99970 * 118.17515 * 6 2 1 8 8 C 1.52999 * 109.47353 * 89.99921 * 7 6 2 9 9 C 1.53777 * 113.61206 * 274.13367 * 8 7 6 10 10 C 1.53950 * 87.02133 * 220.04914 * 9 8 7 11 11 C 1.53776 * 87.11006 * 25.36274 * 10 9 8 12 12 C 1.34778 * 119.99848 * 298.16840 * 6 2 1 13 13 O 1.21280 * 120.00545 * 355.12412 * 12 6 2 14 14 C 1.50708 * 119.99785 * 175.11961 * 12 6 2 15 15 C 1.50695 * 109.46913 * 184.94470 * 14 12 6 16 16 C 1.38315 * 119.96858 * 269.72221 * 15 14 12 17 17 C 1.38285 * 120.14192 * 179.77084 * 16 15 14 18 18 C 1.38120 * 120.06700 * 0.50836 * 17 16 15 19 19 C 1.38858 * 119.92786 * 359.74787 * 18 17 16 20 20 O 1.35757 * 120.06558 * 179.97438 * 19 18 17 21 21 C 1.34829 * 117.00036 * 5.72007 * 20 19 18 22 22 H 1.07996 * 120.00119 * 5.25354 * 21 20 19 23 23 C 1.38651 * 119.99640 * 185.25899 * 21 20 19 24 24 N 1.31551 * 120.00525 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99652 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47041 * 89.99927 * 25 23 21 27 27 H 1.48502 * 109.47052 * 209.99972 * 25 23 21 28 28 H 1.48495 * 109.47314 * 329.99658 * 25 23 21 29 29 C 1.38084 * 119.96565 * 90.00523 * 15 14 12 30 30 H 1.08995 * 109.46980 * 305.36167 * 1 2 3 31 31 H 1.09001 * 109.47099 * 65.36251 * 1 2 3 32 32 H 1.09005 * 109.47245 * 185.35833 * 1 2 3 33 33 H 1.09000 * 109.46981 * 60.76524 * 4 2 1 34 34 H 1.08995 * 109.47210 * 300.76106 * 4 2 1 35 35 H 0.96702 * 114.00055 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.47055 * 209.99831 * 7 6 2 37 37 H 1.08995 * 109.47210 * 329.99241 * 7 6 2 38 38 H 1.08998 * 112.85042 * 45.32947 * 8 7 6 39 39 H 1.09004 * 113.61945 * 334.57020 * 9 8 7 40 40 H 1.09008 * 113.61410 * 105.46811 * 9 8 7 41 41 H 1.09004 * 113.53594 * 270.80974 * 10 9 8 42 42 H 1.09001 * 113.66900 * 139.93727 * 10 9 8 43 43 H 1.09007 * 113.61614 * 220.08361 * 11 10 9 44 44 H 1.09002 * 113.68989 * 89.20272 * 11 10 9 45 45 H 1.09005 * 109.46974 * 304.94564 * 14 12 6 46 46 H 1.08999 * 109.47124 * 64.94774 * 14 12 6 47 47 H 1.08002 * 119.92946 * 0.02562 * 16 15 14 48 48 H 1.07997 * 119.96467 * 180.25919 * 17 16 15 49 49 H 1.07999 * 120.03405 * 179.72679 * 18 17 16 50 50 H 0.96998 * 120.00387 * 180.02562 * 24 23 21 51 51 H 1.07998 * 120.03284 * 359.94868 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4688 -0.7059 1.2582 6 7 2.0183 -0.6906 -1.1962 7 6 2.8272 0.0324 -2.1805 8 6 4.3077 -0.0937 -1.8157 9 6 4.7861 0.9648 -0.8080 10 6 6.0796 1.0541 -1.6381 11 6 5.2519 0.5620 -2.8370 12 6 1.7234 -1.9912 -1.3909 13 8 1.1300 -2.6133 -0.5355 14 6 2.1310 -2.6727 -2.6718 15 6 1.5815 -4.0757 -2.6913 16 6 2.3302 -5.1182 -2.1758 17 6 1.8275 -6.4064 -2.1875 18 6 0.5797 -6.6574 -2.7238 19 6 -0.1723 -5.6138 -3.2469 20 8 -1.3989 -5.8574 -3.7752 21 6 -1.8790 -7.1115 -3.6551 22 1 -1.3322 -7.8466 -3.0832 23 6 -3.0747 -7.4575 -4.2658 24 7 -3.7410 -6.5620 -4.9621 25 14 -3.7396 -9.1952 -4.0999 26 1 -4.6140 -9.2785 -2.9026 27 1 -4.5249 -9.5425 -5.3115 28 1 -2.6085 -10.1462 -3.9539 29 6 0.3333 -4.3202 -3.2289 30 1 -0.3633 0.5947 0.8380 31 1 -0.3633 0.4284 -0.9341 32 1 -0.3634 -1.0232 0.0960 33 1 1.6879 -1.7528 1.2424 34 1 1.6655 -0.2154 2.1392 35 1 3.8622 -1.1463 2.0240 36 1 2.6596 -0.3917 -3.1705 37 1 2.5420 1.0844 -2.1830 38 1 4.5925 -1.1113 -1.5483 39 1 4.1943 1.8801 -0.8220 40 1 4.9379 0.5731 0.1979 41 1 6.8497 0.3509 -1.3210 42 1 6.4555 2.0706 -1.7547 43 1 5.7792 -0.1544 -3.4671 44 1 4.7873 1.3659 -3.4079 45 1 1.7356 -2.1158 -3.5214 46 1 3.2186 -2.7076 -2.7347 47 1 3.3079 -4.9251 -1.7596 48 1 2.4128 -7.2176 -1.7804 49 1 0.1894 -7.6643 -2.7367 50 1 -4.5777 -6.8039 -5.3890 51 1 -0.2493 -3.5064 -3.6347 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280912975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:13 Heat of formation + Delta-G solvation = -89.613675 kcal Electronic energy + Delta-G solvation = -31333.601342 eV Core-core repulsion = 27198.575870 eV Total energy + Delta-G solvation = -4135.025472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.52651 -40.64312 -39.39642 -38.39712 -37.60420 -36.12240 -34.36792 -33.88617 -32.54801 -30.85414 -28.95472 -28.23603 -27.25177 -26.91687 -26.27954 -24.06347 -23.49905 -23.16455 -22.23607 -20.13142 -19.93777 -19.37231 -18.73035 -18.22446 -17.76221 -17.25938 -16.87652 -16.65852 -16.20420 -16.13998 -16.07996 -15.58624 -15.35274 -15.21882 -15.02367 -14.80530 -14.36197 -14.20178 -14.01455 -13.95465 -13.62827 -13.47435 -13.24671 -13.02853 -12.99047 -12.95973 -12.81460 -12.66650 -12.46409 -12.37542 -12.29028 -12.20759 -12.10573 -11.81061 -11.51179 -11.23279 -11.14230 -11.05223 -10.84734 -10.80235 -10.29765 -9.62489 -9.47232 -8.97593 -8.47363 -6.15634 0.52811 0.75845 1.33429 1.43319 1.51309 1.74025 2.06569 2.17617 2.83144 3.16131 3.29661 3.43313 3.72730 3.79796 3.89358 3.94534 4.01230 4.08557 4.13351 4.17456 4.27439 4.32058 4.40184 4.45923 4.50654 4.57452 4.59965 4.60319 4.64314 4.71145 4.73220 4.77523 4.82491 4.98277 5.01067 5.04192 5.06105 5.12313 5.15133 5.21622 5.26455 5.30874 5.47321 5.50935 5.64818 5.72962 5.73074 5.76327 5.83198 6.02540 6.22625 6.51333 6.89431 6.97298 7.33247 7.78930 8.76323 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.002417 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.281312 B =11580.003128 C =11979.366021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 H 0.110 0.890 4 C 0.060 3.940 5 O -0.567 6.567 6 N -0.595 5.595 7 C 0.112 3.888 8 C -0.116 4.116 9 C -0.125 4.125 10 C -0.144 4.144 11 C -0.131 4.131 12 C 0.519 3.481 13 O -0.566 6.566 14 C -0.091 4.091 15 C -0.021 4.021 16 C -0.179 4.179 17 C -0.073 4.073 18 C -0.247 4.247 19 C 0.114 3.886 20 O -0.234 6.234 21 C -0.413 4.413 22 H 0.098 0.902 23 C -0.024 4.024 24 N -0.922 5.922 25 Si 1.019 2.981 26 H -0.264 1.264 27 H -0.268 1.268 28 H -0.253 1.253 29 C -0.192 4.192 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.386 0.614 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.129 0.871 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.117 0.883 50 H 0.273 0.727 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.749 17.531 9.096 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.128 0.872 4 C -0.018 4.018 5 O -0.374 6.374 6 N -0.327 5.327 7 C -0.010 4.010 8 C -0.136 4.136 9 C -0.162 4.162 10 C -0.182 4.182 11 C -0.169 4.169 12 C 0.308 3.692 13 O -0.445 6.445 14 C -0.131 4.131 15 C -0.021 4.021 16 C -0.198 4.198 17 C -0.090 4.090 18 C -0.266 4.266 19 C 0.064 3.936 20 O -0.141 6.141 21 C -0.489 4.489 22 H 0.116 0.884 23 C -0.221 4.221 24 N -0.560 5.560 25 Si 0.838 3.162 26 H -0.189 1.189 27 H -0.193 1.193 28 H -0.176 1.176 29 C -0.212 4.212 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.234 0.766 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.132 0.868 46 H 0.147 0.853 47 H 0.158 0.842 48 H 0.162 0.838 49 H 0.135 0.865 50 H 0.082 0.918 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.999 17.719 8.754 27.415 hybrid contribution -0.810 -1.256 0.496 1.575 sum 18.189 16.463 9.250 26.219 Atomic orbital electron populations 1.22094 0.94780 1.02276 1.03172 1.21087 0.93453 0.96803 0.83634 0.87211 1.22555 0.81799 1.00352 0.97140 1.86430 1.18867 1.81422 1.50667 1.47918 1.52314 1.09376 1.23067 1.21942 0.89608 0.97892 0.91541 1.22813 0.93627 0.99213 0.97930 1.22903 0.96554 0.98130 0.98612 1.22837 0.96822 1.01362 0.97147 1.22932 0.97286 1.00519 0.96201 1.20674 0.78304 0.81880 0.88357 1.90661 1.42531 1.65249 1.46089 1.20728 1.03924 0.91705 0.96713 1.19152 0.92172 0.95293 0.95507 1.20890 1.01423 0.92130 1.05322 1.21104 0.93732 0.97837 0.96367 1.21282 0.97868 0.98872 1.08568 1.19849 0.85744 0.94940 0.93039 1.83941 1.27831 1.32454 1.69827 1.21789 1.06754 0.86418 1.33956 0.88433 1.26593 0.95613 1.04812 0.95054 1.70182 1.16102 1.36587 1.33146 0.84591 0.78709 0.74359 0.78554 1.18949 1.19288 1.17635 1.20163 0.98045 0.93556 1.09388 0.89643 0.91791 0.94046 0.93980 0.92114 0.76590 0.89250 0.88707 0.90657 0.90435 0.91260 0.90914 0.91202 0.91398 0.88991 0.86791 0.85323 0.84189 0.83834 0.86475 0.91830 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 9.07 71.98 0.65 -2.88 16 2 C 0.15 2.94 2.96 44.99 0.13 3.08 16 3 H 0.11 1.61 7.81 -2.39 -0.02 1.59 16 4 C 0.06 1.21 6.28 71.98 0.45 1.66 16 5 O -0.57 -9.76 11.16 -148.98 -1.66 -11.43 16 6 N -0.59 -12.26 2.30 -797.83 -1.84 -14.09 16 7 C 0.11 1.58 5.08 86.38 0.44 2.02 16 8 C -0.12 -1.57 3.96 -10.27 -0.04 -1.61 16 9 C -0.12 -1.61 7.18 31.18 0.22 -1.39 16 10 C -0.14 -1.64 8.09 31.18 0.25 -1.39 16 11 C -0.13 -1.40 7.64 31.12 0.24 -1.16 16 12 C 0.52 14.75 7.08 87.66 0.62 15.37 16 13 O -0.57 -21.26 12.33 -3.03 -0.04 -21.29 16 14 C -0.09 -2.38 4.40 29.10 0.13 -2.26 16 15 C -0.02 -0.75 4.38 -19.88 -0.09 -0.84 16 16 C -0.18 -6.20 9.70 22.30 0.22 -5.99 16 17 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 18 C -0.25 -11.63 9.13 22.39 0.20 -11.42 16 19 C 0.11 6.11 6.65 22.58 0.15 6.26 16 20 O -0.23 -14.81 9.76 -22.81 -0.22 -15.04 16 21 C -0.41 -25.19 9.44 67.92 0.64 -24.55 16 22 H 0.10 5.52 5.29 -2.91 -0.02 5.50 16 23 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 24 N -0.92 -58.26 13.67 21.61 0.30 -57.96 16 25 Si 1.02 44.41 29.55 68.60 2.03 46.44 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 29 C -0.19 -8.87 9.65 22.39 0.22 -8.65 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.22 6.62 -2.38 -0.02 1.20 16 33 H 0.04 1.17 5.86 -2.39 -0.01 1.16 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.39 4.23 9.12 -74.06 -0.68 3.56 16 36 H 0.09 1.13 6.31 -2.39 -0.02 1.11 16 37 H 0.09 1.01 7.67 -2.39 -0.02 1.00 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 0.90 7.92 -2.39 -0.02 0.88 16 40 H 0.07 1.10 6.21 -2.38 -0.01 1.08 16 41 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.09 0.79 8.10 -2.39 -0.02 0.77 16 45 H 0.11 2.57 7.26 -2.38 -0.02 2.56 16 46 H 0.13 2.54 8.08 -2.39 -0.02 2.52 16 47 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 48 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 49 H 0.12 5.58 5.71 -2.91 -0.02 5.56 16 50 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 51 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -81.25 407.75 3.96 -77.30 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.26 Total: 33.29 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 5.13 Total: -37.21 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -1.54 Total: -72.05 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -1.92 Total: -47.76 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -81.25 3.96 -77.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280912975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.319 kcal (2) G-P(sol) polarization free energy of solvation -81.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds