Wall clock time and date at job start Wed Apr 1 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.46955 * 2 1 4 4 C 1.42903 * 113.99908 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.85039 * 341.19120 * 4 3 2 6 6 C 1.53776 * 113.61598 * 112.50313 * 4 3 2 7 7 C 1.53947 * 87.11480 * 89.18410 * 6 4 3 8 8 H 1.09001 * 113.61923 * 270.84078 * 7 6 4 9 9 N 1.46506 * 113.66827 * 139.88933 * 7 6 4 10 10 C 1.46500 * 119.99675 * 330.79125 * 9 7 6 11 11 S 1.65597 * 120.00277 * 150.79183 * 9 7 6 12 12 O 1.42098 * 104.28010 * 206.07001 * 11 9 7 13 13 O 1.42105 * 104.27406 * 333.92942 * 11 9 7 14 14 C 1.81402 * 104.44910 * 89.99990 * 11 9 7 15 15 C 1.52998 * 109.47278 * 180.02562 * 14 11 9 16 16 C 1.53003 * 109.47176 * 300.00018 * 15 14 11 17 17 C 1.53006 * 109.47001 * 59.99969 * 15 14 11 18 18 C 1.50698 * 109.47252 * 180.02562 * 15 14 11 19 19 H 1.07992 * 120.00160 * 355.62111 * 18 15 14 20 20 C 1.37878 * 119.99787 * 175.62452 * 18 15 14 21 21 N 1.31520 * 120.00353 * 5.38478 * 20 18 15 22 22 Si 1.86804 * 119.99813 * 185.38535 * 20 18 15 23 23 H 1.48506 * 109.46945 * 95.00040 * 22 20 18 24 24 H 1.48499 * 109.47262 * 214.99534 * 22 20 18 25 25 H 1.48497 * 109.47100 * 335.00123 * 22 20 18 26 26 C 1.53780 * 113.61232 * 209.99975 * 4 3 2 27 27 C 1.52999 * 113.61938 * 25.42849 * 26 4 3 28 28 C 1.53002 * 113.61490 * 156.25109 * 26 4 3 29 29 H 1.09000 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46509 * 300.00056 * 1 2 3 31 31 H 1.09000 * 109.46978 * 60.00246 * 1 2 3 32 32 H 1.08994 * 109.47259 * 240.00088 * 2 1 3 33 33 H 1.09002 * 109.47493 * 119.99733 * 2 1 3 34 34 H 1.09003 * 113.61255 * 203.66465 * 6 4 3 35 35 H 1.09004 * 113.61756 * 334.56062 * 6 4 3 36 36 H 1.08997 * 109.46898 * 95.27902 * 10 9 7 37 37 H 1.09000 * 109.47291 * 215.27670 * 10 9 7 38 38 H 1.08999 * 109.47240 * 335.27714 * 10 9 7 39 39 H 1.09001 * 109.47093 * 299.99699 * 14 11 9 40 40 H 1.08997 * 109.47310 * 60.00199 * 14 11 9 41 41 H 1.09004 * 109.46739 * 65.28065 * 16 15 14 42 42 H 1.08995 * 109.47334 * 185.27301 * 16 15 14 43 43 H 1.08996 * 109.47251 * 305.28049 * 16 15 14 44 44 H 1.08993 * 109.47195 * 60.00360 * 17 15 14 45 45 H 1.09001 * 109.46792 * 180.02562 * 17 15 14 46 46 H 1.08998 * 109.47000 * 300.00143 * 17 15 14 47 47 H 0.96998 * 119.99936 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.47698 * 200.86724 * 27 26 4 49 49 H 1.09000 * 109.47262 * 80.85929 * 27 26 4 50 50 H 1.09002 * 109.46777 * 320.86496 * 27 26 4 51 51 H 1.09006 * 109.46984 * 273.24296 * 28 26 4 52 52 H 1.08996 * 109.46977 * 33.24239 * 28 26 4 53 53 H 1.08998 * 109.47036 * 153.24330 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9281 0.5457 0.3229 6 6 4.0019 2.0466 -1.3024 7 6 3.8409 3.4346 -0.6563 8 1 2.8667 3.8894 -0.8354 9 7 4.9548 4.3450 -0.9333 10 6 6.2987 3.8093 -1.1638 11 16 4.6948 5.9796 -0.9859 12 8 5.7212 6.4706 -1.8371 13 8 3.3249 6.1052 -1.3423 14 6 4.9623 6.5356 0.7200 15 6 4.7481 8.0482 0.8029 16 6 5.7382 8.7551 -0.1251 17 6 3.3183 8.3851 0.3749 18 6 4.9710 8.5102 2.2199 19 1 5.1689 7.7884 2.9984 20 6 4.9222 9.8545 2.5224 21 7 4.5772 10.7245 1.5983 22 14 5.3460 10.4402 4.2449 23 1 6.7744 10.8435 4.2931 24 1 4.4914 11.6026 4.5968 25 1 5.1092 9.3403 5.2140 26 6 3.9489 2.7251 0.7039 27 6 2.9884 3.2754 1.7601 28 6 5.3849 2.5970 1.2160 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.0399 1.7702 -1.4874 35 1 3.3604 1.8907 -2.1698 36 1 6.4677 3.7006 -2.2351 37 1 7.0386 4.4924 -0.7468 38 1 6.3897 2.8363 -0.6810 39 1 4.2566 6.0324 1.3810 40 1 5.9807 6.2952 1.0250 41 1 5.5168 8.4932 -1.1598 42 1 5.6499 9.8339 0.0033 43 1 6.7530 8.4419 0.1199 44 1 2.6130 7.8816 1.0360 45 1 3.1659 9.4628 0.4336 46 1 3.1576 8.0510 -0.6500 47 1 4.5433 11.6702 1.8111 48 1 3.2158 4.3250 1.9465 49 1 3.1018 2.7093 2.6846 50 1 1.9631 3.1840 1.4015 51 1 5.3771 2.1570 2.2133 52 1 5.9555 1.9585 0.5417 53 1 5.8451 3.5842 1.2581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332054488.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:20 Heat of formation + Delta-G solvation = -110.171720 kcal Electronic energy + Delta-G solvation = -31814.327667 eV Core-core repulsion = 27813.854683 eV Total energy + Delta-G solvation = -4000.472984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.196 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.53872 -38.17022 -38.15548 -38.04021 -36.90210 -35.05199 -33.64743 -32.02151 -31.14678 -29.06921 -28.31667 -27.72762 -27.26643 -27.10976 -24.76500 -23.73172 -23.00943 -21.32657 -20.09842 -19.39934 -18.88716 -17.94593 -17.64728 -17.07433 -16.78546 -16.67330 -16.53792 -16.14291 -15.91238 -15.55244 -14.98778 -14.77315 -14.49365 -14.39966 -14.29835 -14.00618 -13.82680 -13.57054 -13.54823 -13.42166 -13.14766 -13.07570 -12.97499 -12.90246 -12.84099 -12.79023 -12.65047 -12.52459 -12.45991 -12.23945 -12.18769 -12.15470 -12.06627 -11.89713 -11.67786 -11.60395 -11.54051 -11.31151 -11.00585 -10.61461 -10.40636 -10.27749 -9.71561 -8.04310 -6.22748 -0.62954 1.43267 1.45045 1.54214 1.80911 2.43586 2.65657 2.89279 3.17024 3.23263 3.46259 3.55177 3.70654 3.91704 4.00389 4.08667 4.15646 4.25651 4.31865 4.32897 4.44238 4.55258 4.55789 4.57416 4.61029 4.73413 4.79567 4.81065 4.83068 4.87537 4.90123 4.94649 4.99113 5.03375 5.04453 5.07620 5.10155 5.19301 5.21411 5.30055 5.33135 5.35118 5.45493 5.47407 5.56742 5.63195 5.75583 5.93705 6.09453 6.32957 6.42801 6.81699 7.45270 8.95772 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.003462 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.068795 B = 8086.832433 C = 8781.446220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.386 6.386 4 C 0.083 3.917 5 H 0.108 0.892 6 C -0.152 4.152 7 C 0.118 3.882 8 H 0.097 0.903 9 N -0.986 5.986 10 C 0.068 3.932 11 S 2.602 3.398 12 O -0.990 6.990 13 O -0.994 6.994 14 C -0.583 4.583 15 C 0.072 3.928 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.516 4.516 19 H 0.063 0.937 20 C 0.017 3.983 21 N -0.908 5.908 22 Si 0.955 3.045 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 C -0.098 4.098 27 C -0.141 4.141 28 C -0.133 4.133 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.025 0.975 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.038 0.962 45 H 0.069 0.931 46 H 0.028 0.972 47 H 0.262 0.738 48 H 0.040 0.960 49 H 0.070 0.930 50 H 0.057 0.943 51 H 0.071 0.929 52 H 0.088 0.912 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -25.323 -1.427 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.306 6.306 4 C 0.024 3.976 5 H 0.126 0.874 6 C -0.191 4.191 7 C 0.012 3.988 8 H 0.115 0.885 9 N -0.824 5.824 10 C -0.075 4.075 11 S 2.702 3.298 12 O -0.980 6.980 13 O -0.984 6.984 14 C -0.715 4.715 15 C 0.070 3.930 16 C -0.218 4.218 17 C -0.214 4.214 18 C -0.555 4.555 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.547 5.547 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 C -0.101 4.101 27 C -0.198 4.198 28 C -0.190 4.190 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.043 0.957 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.089 0.911 50 H 0.076 0.924 51 H 0.090 0.910 52 H 0.106 0.894 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.080 -24.490 -2.281 24.596 hybrid contribution 0.118 0.864 1.262 1.534 sum 0.038 -23.626 -1.019 23.648 Atomic orbital electron populations 1.21780 0.93703 1.03176 1.02345 1.22705 0.95741 0.82880 1.01103 1.87909 1.20260 1.27930 1.94488 1.22968 0.81517 0.97797 0.95298 0.87436 1.23910 1.03545 0.93366 0.98306 1.22776 0.89061 0.89985 0.96949 0.88483 1.57240 1.15864 1.22791 1.86461 1.22106 0.80316 1.02727 1.02392 1.05060 0.73175 0.73169 0.78417 1.93491 1.59955 1.79652 1.64911 1.93476 1.36145 1.85489 1.83313 1.30509 1.11488 1.07570 1.21927 1.17893 0.92248 0.86137 0.96720 1.22181 0.98622 1.05063 0.95896 1.22195 0.97985 1.03761 0.97499 1.21284 1.48735 0.92394 0.93092 0.91855 1.25696 0.94813 0.97049 1.00646 1.69953 1.47797 1.02306 1.34619 0.85590 0.78004 0.77912 0.80417 1.20273 1.21297 1.19051 1.22721 0.97450 0.95517 0.94375 1.21683 0.99415 1.00068 0.98616 1.21861 0.92395 1.02876 1.01848 0.89130 0.92694 0.92851 0.92250 0.92025 0.85964 0.90703 0.92354 0.91152 0.86276 0.85281 0.84575 0.95662 0.90471 0.93939 0.94326 0.91244 0.95310 0.92880 0.94117 0.91147 0.92359 0.90994 0.89378 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.05 0.71 6.50 71.98 0.47 1.17 16 3 O -0.39 -7.78 8.84 -148.98 -1.32 -9.10 16 4 C 0.08 1.38 3.77 31.12 0.12 1.49 16 5 H 0.11 1.16 7.83 -2.39 -0.02 1.14 16 6 C -0.15 -2.70 6.98 31.18 0.22 -2.49 16 7 C 0.12 3.01 3.75 45.57 0.17 3.19 16 8 H 0.10 3.10 6.98 -2.39 -0.02 3.08 16 9 N -0.99 -27.42 2.85 -513.45 -1.46 -28.88 16 10 C 0.07 1.39 7.72 127.77 0.99 2.38 16 11 S 2.60 101.38 4.42 -56.49 -0.25 101.13 16 12 O -0.99 -43.07 14.92 -127.65 -1.91 -44.98 16 13 O -0.99 -44.70 14.24 -127.65 -1.82 -46.52 16 14 C -0.58 -23.15 5.12 71.98 0.37 -22.78 16 15 C 0.07 3.58 0.52 -52.93 -0.03 3.56 16 16 C -0.16 -8.19 7.60 71.98 0.55 -7.64 16 17 C -0.16 -8.13 7.82 71.98 0.56 -7.56 16 18 C -0.52 -27.31 8.01 25.60 0.21 -27.11 16 19 H 0.06 3.22 7.75 -2.91 -0.02 3.19 16 20 C 0.02 0.93 5.12 84.65 0.43 1.36 16 21 N -0.91 -51.07 9.36 21.45 0.20 -50.87 16 22 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C -0.10 -1.98 1.34 -51.65 -0.07 -2.05 16 27 C -0.14 -3.35 9.00 71.98 0.65 -2.70 16 28 C -0.13 -2.04 7.43 71.98 0.54 -1.50 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 1.52 5.90 -2.39 -0.01 1.50 16 35 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.43 7.98 -2.39 -0.02 1.42 16 38 H 0.12 1.49 3.53 -2.39 -0.01 1.48 16 39 H 0.13 4.76 6.93 -2.39 -0.02 4.75 16 40 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 41 H 0.02 1.24 5.86 -2.38 -0.01 1.23 16 42 H 0.08 4.29 5.80 -2.39 -0.01 4.28 16 43 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 3.89 6.22 -2.39 -0.01 3.88 16 46 H 0.03 1.44 5.46 -2.39 -0.01 1.43 16 47 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 48 H 0.04 1.10 6.93 -2.39 -0.02 1.09 16 49 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 50 H 0.06 1.52 7.02 -2.39 -0.02 1.50 16 51 H 0.07 0.95 8.11 -2.38 -0.02 0.93 16 52 H 0.09 0.86 5.56 -2.39 -0.01 0.85 16 53 H 0.06 1.10 6.89 -2.39 -0.02 1.08 16 Total: -1.00 -70.71 399.06 2.26 -68.45 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.88 Total: 28.22 kcal Atomic # 6 Polarization: -67.86 SS G_CDS: 5.90 Total: -61.96 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -1.26 Total: -79.75 kcal Atomic # 8 Polarization: -95.55 SS G_CDS: -5.04 Total: -100.59 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 101.38 SS G_CDS: -0.25 Total: 101.13 kcal Total: -70.71 2.26 -68.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332054488.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.721 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds