Wall clock time and date at job start Wed Apr 1 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45193 * 109.47192 * 2 1 4 4 C 1.34227 * 116.99937 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00263 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00032 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47548 * 59.99785 * 6 4 3 8 8 N 1.46902 * 109.47415 * 180.02562 * 6 4 3 9 9 C 1.46901 * 110.99795 * 272.76059 * 8 6 4 10 10 C 1.50700 * 109.47068 * 183.15972 * 9 8 6 11 11 C 1.38634 * 119.74646 * 269.72584 * 10 9 8 12 12 C 1.37629 * 120.24277 * 179.71871 * 11 10 9 13 13 C 1.40709 * 119.74454 * 0.57493 * 12 11 10 14 14 C 1.41393 * 120.24329 * 179.67869 * 13 12 11 15 15 H 1.07999 * 120.00185 * 26.25975 * 14 13 12 16 16 C 1.39949 * 120.00108 * 206.26307 * 14 13 12 17 17 N 1.30820 * 119.99967 * 15.99094 * 16 14 13 18 18 Si 1.86804 * 120.00229 * 195.98646 * 16 14 13 19 19 H 1.48503 * 109.46510 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47110 * 119.99820 * 18 16 14 21 21 H 1.48494 * 109.47209 * 240.00064 * 18 16 14 22 22 C 1.40714 * 119.51259 * 359.70271 * 13 12 11 23 23 C 1.37616 * 119.74642 * 359.97438 * 22 13 12 24 24 C 1.53010 * 109.47164 * 299.99911 * 6 4 3 25 25 C 1.53181 * 109.53942 * 64.01244 * 24 6 4 26 26 C 1.53092 * 109.15875 * 176.84677 * 25 24 6 27 27 O 1.42902 * 109.41739 * 302.39162 * 26 25 24 28 28 C 1.42904 * 114.09873 * 61.15730 * 27 26 25 29 29 C 1.53090 * 109.41434 * 298.84573 * 28 27 26 30 30 H 1.08998 * 109.47621 * 59.99984 * 1 2 3 31 31 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47132 * 299.99933 * 1 2 3 33 33 H 1.09007 * 109.46895 * 239.99607 * 2 1 3 34 34 H 1.08998 * 109.46923 * 120.00286 * 2 1 3 35 35 H 1.00895 * 111.00285 * 148.80172 * 8 6 4 36 36 H 1.08998 * 109.46799 * 303.15729 * 9 8 6 37 37 H 1.08998 * 109.47122 * 63.15835 * 9 8 6 38 38 H 1.07993 * 119.88092 * 359.97438 * 11 10 9 39 39 H 1.08000 * 120.12712 * 180.27511 * 12 11 10 40 40 H 0.97005 * 120.00356 * 180.02562 * 17 16 14 41 41 H 1.08007 * 120.12625 * 179.97438 * 22 13 12 42 42 H 1.08006 * 119.87634 * 180.02562 * 23 22 13 43 43 H 1.08993 * 109.54028 * 303.83379 * 24 6 4 44 44 H 1.08993 * 109.52195 * 56.94255 * 25 24 6 45 45 H 1.08999 * 109.57203 * 296.78191 * 25 24 6 46 46 H 1.09001 * 109.48101 * 182.40404 * 26 25 24 47 47 H 1.08997 * 109.48097 * 62.37540 * 26 25 24 48 48 H 1.08999 * 109.47623 * 58.82634 * 28 27 26 49 49 H 1.08995 * 109.48219 * 178.86185 * 28 27 26 50 50 H 1.09006 * 109.52251 * 297.70090 * 29 28 27 51 51 H 1.08998 * 109.57380 * 177.54648 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9207 2.9373 -0.0012 7 1 3.5851 3.4698 0.8887 8 7 5.3877 2.8605 -0.0023 9 6 5.9110 2.7671 1.3672 10 6 7.4176 2.7684 1.3304 11 6 8.1044 1.5677 1.2379 12 6 9.4801 1.5574 1.1978 13 6 10.1895 2.7708 1.2633 14 6 11.6031 2.7719 1.2297 15 1 12.1325 1.9636 0.7474 16 6 12.3162 3.8206 1.8216 17 7 11.7192 4.6241 2.6639 18 14 14.1206 4.0729 1.4092 19 1 14.5554 3.0379 0.4371 20 1 14.3085 5.4203 0.8140 21 1 14.9318 3.9614 2.6479 22 6 9.4819 3.9830 1.3629 23 6 8.1062 3.9699 1.3947 24 6 3.4487 3.6839 -1.2505 25 6 1.9270 3.8529 -1.2021 26 6 1.4733 4.6687 -2.4155 27 8 2.1429 5.9311 -2.4165 28 6 3.5659 5.8367 -2.5081 29 6 4.1038 5.0677 -1.2985 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.7906 3.6461 -0.4906 36 1 5.5610 3.6200 1.9487 37 1 5.5596 1.8441 1.8283 38 1 7.5579 0.6374 1.1930 39 1 10.0131 0.6212 1.1213 40 1 12.2134 5.3513 3.0739 41 1 10.0165 4.9201 1.4142 42 1 7.5610 4.8991 1.4707 43 1 3.7247 3.1174 -2.1398 44 1 1.6474 4.3748 -0.2871 45 1 1.4500 2.8730 -1.2230 46 1 0.3963 4.8285 -2.3639 47 1 1.7171 4.1272 -3.3294 48 1 3.8370 5.3104 -3.4233 49 1 3.9964 6.8379 -2.5232 50 1 3.8681 5.6142 -0.3853 51 1 5.1844 4.9563 -1.3877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348778326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:26 Heat of formation + Delta-G solvation = -123.092949 kcal Electronic energy + Delta-G solvation = -30865.686206 eV Core-core repulsion = 26729.208964 eV Total energy + Delta-G solvation = -4136.477242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.79357 -39.42284 -37.86439 -36.89119 -36.00278 -34.13634 -32.97527 -31.92626 -31.29751 -30.24847 -29.24547 -27.99208 -25.83210 -24.58633 -23.63110 -23.11985 -22.69094 -20.97553 -20.72622 -20.34462 -19.77467 -17.77713 -17.27015 -17.05445 -16.44621 -16.18357 -16.12223 -15.47928 -15.21586 -14.95788 -14.72582 -14.24572 -14.13887 -14.00453 -13.81413 -13.53446 -13.35578 -13.18659 -12.99355 -12.57332 -12.43788 -12.38336 -12.07278 -11.92169 -11.88470 -11.76452 -11.53768 -11.45364 -11.21729 -11.02723 -10.91756 -10.87558 -10.67659 -10.54407 -10.45735 -10.34104 -10.21636 -9.72888 -9.53292 -9.37216 -9.15060 -8.24632 -7.44150 -7.27537 -6.74846 -4.34947 2.30818 2.51390 2.74488 3.07159 3.10134 3.13044 3.17398 3.67109 3.93836 4.19668 4.37698 4.46445 4.58732 4.69998 4.71565 4.74281 4.79407 4.91294 5.01534 5.04925 5.05613 5.16688 5.34939 5.39160 5.46151 5.47663 5.52111 5.57393 5.63867 5.69693 5.71735 5.80719 5.84189 5.85639 5.97244 6.08768 6.27553 6.37120 6.42954 6.48164 6.95734 6.97859 7.08840 7.14663 7.27677 7.39035 7.57393 7.64618 7.88389 7.92821 8.07135 8.14726 8.32304 8.65172 8.90940 8.98730 10.20009 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.002423 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.094267 B =11552.194973 C =13186.082943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.361 6.361 4 C 0.460 3.540 5 O -0.477 6.477 6 C 0.104 3.896 7 H 0.079 0.921 8 N -0.665 5.665 9 C 0.126 3.874 10 C -0.214 4.214 11 C -0.064 4.064 12 C -0.227 4.227 13 C 0.114 3.886 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.796 5.796 18 Si 0.907 3.093 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.164 4.164 23 C -0.096 4.096 24 C -0.086 4.086 25 C -0.156 4.156 26 C 0.062 3.938 27 O -0.385 6.385 28 C 0.064 3.936 29 C -0.156 4.156 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.353 0.647 36 H 0.023 0.977 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.279 0.721 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.049 0.951 48 H 0.052 0.948 49 H 0.096 0.904 50 H 0.076 0.924 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.062 0.224 -7.033 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.279 6.279 4 C 0.299 3.701 5 O -0.360 6.360 6 C -0.008 4.008 7 H 0.097 0.903 8 N -0.302 5.302 9 C -0.001 4.001 10 C -0.216 4.216 11 C -0.083 4.083 12 C -0.246 4.246 13 C 0.111 3.889 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.422 5.422 18 Si 0.732 3.268 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.184 4.184 23 C -0.115 4.115 24 C -0.105 4.105 25 C -0.194 4.194 26 C -0.014 4.014 27 O -0.304 6.304 28 C -0.013 4.013 29 C -0.194 4.194 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.178 0.822 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.115 0.885 50 H 0.095 0.905 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.869 -0.408 -6.961 22.003 hybrid contribution 0.989 0.475 0.367 1.157 sum -19.880 0.068 -6.594 20.945 Atomic orbital electron populations 1.21795 0.92812 1.02822 1.03348 1.22970 0.95103 0.80932 1.02554 1.86540 1.25099 1.31675 1.84608 1.23860 0.80124 0.92937 0.73136 1.90683 1.60108 1.42493 1.42743 1.21097 0.91253 0.88799 0.99664 0.90326 1.60208 1.00849 1.50132 1.18983 1.20663 0.93641 0.99159 0.86674 1.18812 0.91738 0.93734 1.17316 1.20385 0.93914 0.95672 0.98312 1.21010 0.93308 0.96897 1.13429 1.17642 0.93254 0.90763 0.87237 1.19633 0.91529 1.06120 1.31942 0.90459 1.25905 1.00861 0.94604 0.92838 1.69828 1.38464 1.13992 1.19899 0.86279 0.82034 0.79208 0.79308 1.18420 1.19749 1.20030 1.21255 0.92138 0.98626 1.06358 1.20513 0.94760 0.94969 1.01211 1.21268 0.95979 0.95859 0.97347 1.22420 0.94822 1.02394 0.99793 1.22575 0.97245 0.84793 0.96822 1.87929 1.18787 1.28995 1.94651 1.22545 0.81017 1.01181 0.96521 1.22333 1.01217 0.95346 1.00499 0.91588 0.90454 0.91547 0.91409 0.91428 0.82224 0.95937 0.91825 0.89269 0.89074 0.91013 0.86574 0.89890 0.89777 0.90732 0.88745 0.88861 0.93298 0.92953 0.88543 0.90539 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.09 7.38 -39.25 -0.29 -4.37 16 4 C 0.46 6.48 7.20 36.01 0.26 6.74 16 5 O -0.48 -8.52 15.89 -18.75 -0.30 -8.82 16 6 C 0.10 1.32 2.17 -68.86 -0.15 1.17 16 7 H 0.08 0.94 7.72 -51.93 -0.40 0.54 16 8 N -0.67 -10.46 5.84 -109.21 -0.64 -11.10 16 9 C 0.13 2.25 5.55 -4.98 -0.03 2.22 16 10 C -0.21 -4.66 5.38 -104.33 -0.56 -5.22 16 11 C -0.06 -1.50 9.67 -39.66 -0.38 -1.88 16 12 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 13 C 0.11 3.05 5.56 -106.83 -0.59 2.46 16 14 C -0.46 -12.38 9.06 -37.74 -0.34 -12.72 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 16 C 0.08 1.90 5.17 -17.34 -0.09 1.81 16 17 N -0.80 -20.62 10.97 55.55 0.61 -20.01 16 18 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 22 C -0.16 -4.23 8.68 -38.87 -0.34 -4.57 16 23 C -0.10 -2.17 9.67 -39.66 -0.38 -2.55 16 24 C -0.09 -0.88 1.98 -90.43 -0.18 -1.06 16 25 C -0.16 -1.38 4.92 -26.59 -0.13 -1.51 16 26 C 0.06 0.52 6.84 37.21 0.25 0.78 16 27 O -0.38 -4.00 10.77 -35.23 -0.38 -4.38 16 28 C 0.06 0.58 6.84 37.20 0.25 0.84 16 29 C -0.16 -1.51 5.05 -26.59 -0.13 -1.64 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 34 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 35 H 0.35 5.27 5.95 -39.29 -0.23 5.03 16 36 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 37 H 0.06 1.20 7.85 -51.93 -0.41 0.79 16 38 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 39 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 40 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 41 H 0.12 3.08 6.23 -52.48 -0.33 2.76 16 42 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.83 5.65 -51.93 -0.29 0.53 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.08 0.84 6.24 -51.93 -0.32 0.51 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -30.10 407.35 -10.49 -40.59 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.29 Total: 9.27 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -2.31 Total: -21.04 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: -0.03 Total: -31.11 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.97 Total: -17.57 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.10 -10.49 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348778326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.506 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds