Wall clock time and date at job start Wed Apr 1 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45193 * 109.47192 * 2 1 4 4 C 1.34227 * 116.99937 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00263 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00032 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47548 * 59.99785 * 6 4 3 8 8 N 1.46902 * 109.47415 * 180.02562 * 6 4 3 9 9 C 1.46901 * 110.99795 * 272.76059 * 8 6 4 10 10 C 1.50700 * 109.47068 * 183.15972 * 9 8 6 11 11 C 1.38634 * 119.74646 * 269.72584 * 10 9 8 12 12 C 1.37629 * 120.24277 * 179.71871 * 11 10 9 13 13 C 1.40709 * 119.74454 * 0.57493 * 12 11 10 14 14 C 1.41393 * 120.24329 * 179.67869 * 13 12 11 15 15 H 1.07999 * 120.00185 * 26.25975 * 14 13 12 16 16 C 1.39949 * 120.00108 * 206.26307 * 14 13 12 17 17 N 1.30820 * 119.99967 * 15.99094 * 16 14 13 18 18 Si 1.86804 * 120.00229 * 195.98646 * 16 14 13 19 19 H 1.48503 * 109.46510 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47110 * 119.99820 * 18 16 14 21 21 H 1.48494 * 109.47209 * 240.00064 * 18 16 14 22 22 C 1.40714 * 119.51259 * 359.70271 * 13 12 11 23 23 C 1.37616 * 119.74642 * 359.97438 * 22 13 12 24 24 C 1.53010 * 109.47164 * 299.99911 * 6 4 3 25 25 C 1.53181 * 109.53942 * 64.01244 * 24 6 4 26 26 C 1.53092 * 109.15875 * 176.84677 * 25 24 6 27 27 O 1.42902 * 109.41739 * 302.39162 * 26 25 24 28 28 C 1.42904 * 114.09873 * 61.15730 * 27 26 25 29 29 C 1.53090 * 109.41434 * 298.84573 * 28 27 26 30 30 H 1.08998 * 109.47621 * 59.99984 * 1 2 3 31 31 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47132 * 299.99933 * 1 2 3 33 33 H 1.09007 * 109.46895 * 239.99607 * 2 1 3 34 34 H 1.08998 * 109.46923 * 120.00286 * 2 1 3 35 35 H 1.00895 * 111.00285 * 148.80172 * 8 6 4 36 36 H 1.08998 * 109.46799 * 303.15729 * 9 8 6 37 37 H 1.08998 * 109.47122 * 63.15835 * 9 8 6 38 38 H 1.07993 * 119.88092 * 359.97438 * 11 10 9 39 39 H 1.08000 * 120.12712 * 180.27511 * 12 11 10 40 40 H 0.97005 * 120.00356 * 180.02562 * 17 16 14 41 41 H 1.08007 * 120.12625 * 179.97438 * 22 13 12 42 42 H 1.08006 * 119.87634 * 180.02562 * 23 22 13 43 43 H 1.08993 * 109.54028 * 303.83379 * 24 6 4 44 44 H 1.08993 * 109.52195 * 56.94255 * 25 24 6 45 45 H 1.08999 * 109.57203 * 296.78191 * 25 24 6 46 46 H 1.09001 * 109.48101 * 182.40404 * 26 25 24 47 47 H 1.08997 * 109.48097 * 62.37540 * 26 25 24 48 48 H 1.08999 * 109.47623 * 58.82634 * 28 27 26 49 49 H 1.08995 * 109.48219 * 178.86185 * 28 27 26 50 50 H 1.09006 * 109.52251 * 297.70090 * 29 28 27 51 51 H 1.08998 * 109.57380 * 177.54648 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9207 2.9373 -0.0012 7 1 3.5851 3.4698 0.8887 8 7 5.3877 2.8605 -0.0023 9 6 5.9110 2.7671 1.3672 10 6 7.4176 2.7684 1.3304 11 6 8.1044 1.5677 1.2379 12 6 9.4801 1.5574 1.1978 13 6 10.1895 2.7708 1.2633 14 6 11.6031 2.7719 1.2297 15 1 12.1325 1.9636 0.7474 16 6 12.3162 3.8206 1.8216 17 7 11.7192 4.6241 2.6639 18 14 14.1206 4.0729 1.4092 19 1 14.5554 3.0379 0.4371 20 1 14.3085 5.4203 0.8140 21 1 14.9318 3.9614 2.6479 22 6 9.4819 3.9830 1.3629 23 6 8.1062 3.9699 1.3947 24 6 3.4487 3.6839 -1.2505 25 6 1.9270 3.8529 -1.2021 26 6 1.4733 4.6687 -2.4155 27 8 2.1429 5.9311 -2.4165 28 6 3.5659 5.8367 -2.5081 29 6 4.1038 5.0677 -1.2985 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.7906 3.6461 -0.4906 36 1 5.5610 3.6200 1.9487 37 1 5.5596 1.8441 1.8283 38 1 7.5579 0.6374 1.1930 39 1 10.0131 0.6212 1.1213 40 1 12.2134 5.3513 3.0739 41 1 10.0165 4.9201 1.4142 42 1 7.5610 4.8991 1.4707 43 1 3.7247 3.1174 -2.1398 44 1 1.6474 4.3748 -0.2871 45 1 1.4500 2.8730 -1.2230 46 1 0.3963 4.8285 -2.3639 47 1 1.7171 4.1272 -3.3294 48 1 3.8370 5.3104 -3.4233 49 1 3.9964 6.8379 -2.5232 50 1 3.8681 5.6142 -0.3853 51 1 5.1844 4.9563 -1.3877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348778326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:25 Heat of formation + Delta-G solvation = -139.237966 kcal Electronic energy + Delta-G solvation = -30866.386307 eV Core-core repulsion = 26729.208964 eV Total energy + Delta-G solvation = -4137.177342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.81839 -40.24792 -39.58341 -38.04547 -37.14220 -35.76959 -34.32965 -32.62228 -32.05638 -31.81791 -31.14432 -29.30975 -27.37646 -25.48125 -24.77663 -24.12080 -23.60329 -22.88467 -21.76105 -21.67141 -21.02135 -19.21659 -18.81712 -17.99883 -17.43552 -17.25114 -16.99083 -16.85909 -16.45276 -16.03518 -15.77746 -15.71049 -15.54808 -15.14568 -14.96218 -14.77716 -14.40301 -14.37362 -14.15945 -13.80560 -13.61252 -13.49103 -13.41861 -13.21312 -13.07427 -12.86076 -12.74010 -12.69809 -12.51629 -12.38737 -12.21523 -12.11144 -11.96550 -11.70243 -11.52039 -11.42739 -11.30925 -11.22964 -11.13811 -11.02704 -10.46885 -9.52355 -9.33543 -9.18983 -8.63175 -6.34473 0.91461 1.15003 1.21301 1.37925 1.47119 1.52920 1.61235 2.21249 2.68033 2.99741 3.19754 3.48898 3.60991 3.75426 3.83228 3.94740 4.02343 4.09520 4.10982 4.14954 4.23968 4.30583 4.33802 4.37685 4.41748 4.55832 4.60742 4.63787 4.68102 4.76424 4.79602 4.84016 4.87469 4.94174 4.95354 5.02789 5.12116 5.16090 5.16926 5.24315 5.34401 5.36606 5.46980 5.47841 5.71148 5.82984 6.01452 6.10226 6.21460 6.30060 6.38393 6.41353 6.70052 6.84978 6.94655 7.03377 8.34335 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.002423 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.094267 B =11552.194973 C =13186.082943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.351 6.351 4 C 0.462 3.538 5 O -0.522 6.522 6 C 0.106 3.894 7 H 0.095 0.905 8 N -0.677 5.677 9 C 0.135 3.865 10 C -0.200 4.200 11 C -0.072 4.072 12 C -0.245 4.245 13 C 0.082 3.918 14 C -0.502 4.502 15 H 0.071 0.929 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.266 1.266 22 C -0.185 4.185 23 C -0.091 4.091 24 C -0.079 4.079 25 C -0.149 4.149 26 C 0.060 3.940 27 O -0.400 6.400 28 C 0.063 3.937 29 C -0.152 4.152 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.359 0.641 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.288 0.712 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.106 0.894 50 H 0.077 0.923 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.008 1.272 -7.492 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.268 6.268 4 C 0.304 3.696 5 O -0.409 6.409 6 C -0.005 4.005 7 H 0.112 0.888 8 N -0.314 5.314 9 C 0.008 3.992 10 C -0.201 4.201 11 C -0.091 4.091 12 C -0.265 4.265 13 C 0.080 3.920 14 C -0.532 4.532 15 H 0.089 0.911 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.186 1.186 21 H -0.191 1.191 22 C -0.204 4.204 23 C -0.110 4.110 24 C -0.098 4.098 25 C -0.186 4.186 26 C -0.016 4.016 27 O -0.320 6.320 28 C -0.013 4.013 29 C -0.190 4.190 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.184 0.816 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.128 0.872 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.124 0.876 50 H 0.096 0.904 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.861 0.646 -7.424 24.045 hybrid contribution 1.380 0.083 0.506 1.472 sum -21.481 0.729 -6.917 22.579 Atomic orbital electron populations 1.21802 0.89948 1.04242 1.03953 1.23242 0.97275 0.79826 1.01994 1.86547 1.23487 1.32899 1.83819 1.24136 0.80688 0.92895 0.71842 1.90672 1.61246 1.43876 1.45084 1.21184 0.89226 0.88567 1.01551 0.88797 1.59989 1.03002 1.50866 1.17574 1.20492 0.90758 0.99691 0.88286 1.19202 0.94071 0.92689 1.14165 1.20587 0.93345 0.96926 0.98248 1.21154 0.94332 0.96615 1.14367 1.17967 0.93951 0.91692 0.88426 1.19834 0.92062 1.07457 1.33813 0.91120 1.26726 1.05426 0.93725 0.92032 1.69865 1.40475 1.14535 1.20404 0.85164 0.76071 0.79298 0.79186 1.18482 1.18606 1.19056 1.21256 0.93485 0.97717 1.07960 1.20774 0.93798 0.96623 0.99815 1.21234 0.97184 0.95729 0.95659 1.22359 0.93400 1.02612 1.00271 1.22706 0.98084 0.84130 0.96690 1.87915 1.19277 1.30079 1.94686 1.22606 0.80680 1.01722 0.96323 1.22297 1.00834 0.94908 1.00977 0.90694 0.88644 0.91168 0.91850 0.92280 0.81638 0.93803 0.92708 0.88379 0.89203 0.90141 0.87936 0.86872 0.90531 0.90518 0.88579 0.87160 0.92756 0.92492 0.87620 0.90382 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.89 6.19 71.98 0.45 1.34 16 3 O -0.35 -7.37 7.38 -51.39 -0.38 -7.75 16 4 C 0.46 12.54 7.20 71.24 0.51 13.05 16 5 O -0.52 -18.58 15.89 21.96 0.35 -18.23 16 6 C 0.11 2.51 2.17 44.17 0.10 2.61 16 7 H 0.09 1.99 7.72 -2.39 -0.02 1.97 16 8 N -0.68 -20.36 5.84 -499.44 -2.91 -23.27 16 9 C 0.14 4.63 5.55 85.56 0.48 5.11 16 10 C -0.20 -8.55 5.38 -19.68 -0.11 -8.66 16 11 C -0.07 -3.42 9.67 22.22 0.21 -3.20 16 12 C -0.25 -12.81 9.80 22.73 0.22 -12.59 16 13 C 0.08 4.57 5.56 -21.29 -0.12 4.45 16 14 C -0.50 -27.94 9.06 23.46 0.21 -27.72 16 15 H 0.07 3.85 7.90 -2.91 -0.02 3.83 16 16 C 0.04 1.81 5.17 85.26 0.44 2.25 16 17 N -0.83 -43.60 10.97 21.83 0.24 -43.36 16 18 Si 0.98 38.88 29.59 68.60 2.03 40.91 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 C -0.18 -9.72 8.68 22.73 0.20 -9.52 16 23 C -0.09 -4.10 9.67 22.22 0.21 -3.88 16 24 C -0.08 -1.48 1.98 -10.67 -0.02 -1.50 16 25 C -0.15 -2.25 4.92 30.69 0.15 -2.10 16 26 C 0.06 0.85 6.84 72.01 0.49 1.34 16 27 O -0.40 -7.38 10.77 -148.98 -1.60 -8.98 16 28 C 0.06 1.02 6.84 72.01 0.49 1.51 16 29 C -0.15 -2.64 5.05 30.68 0.15 -2.48 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 34 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 35 H 0.36 10.12 5.95 -89.70 -0.53 9.59 16 36 H 0.04 1.33 7.92 -2.39 -0.02 1.31 16 37 H 0.05 1.99 7.85 -2.39 -0.02 1.98 16 38 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.29 13.63 8.30 -92.70 -0.77 12.86 16 41 H 0.10 5.60 6.23 -2.91 -0.02 5.59 16 42 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.10 1.44 5.65 -2.39 -0.01 1.42 16 46 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 51 H 0.08 1.45 6.24 -2.39 -0.01 1.43 16 Total: -1.00 -66.72 407.35 2.93 -63.80 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: 0.39 Total: 37.60 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 4.82 Total: -40.70 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -2.67 Total: -66.63 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.63 Total: -34.96 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -66.72 2.93 -63.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348778326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.442 kcal (2) G-P(sol) polarization free energy of solvation -66.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds