Wall clock time and date at job start Wed Apr 1 2020 05:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46994 * 2 1 4 4 C 1.53004 * 109.46887 * 240.00275 * 2 1 3 5 5 O 1.42893 * 109.46914 * 304.99898 * 4 2 1 6 6 C 1.42900 * 114.00152 * 180.02562 * 5 4 2 7 7 H 1.09006 * 110.75137 * 32.01631 * 6 5 4 8 8 C 1.55305 * 110.85117 * 155.71360 * 6 5 4 9 9 C 1.54949 * 100.93952 * 152.32786 * 8 6 5 10 10 O 1.43643 * 105.13877 * 323.55351 * 9 8 6 11 11 C 1.43244 * 109.96926 * 24.42844 * 10 9 8 12 12 N 1.46495 * 109.46815 * 120.00276 * 2 1 3 13 13 C 1.34780 * 119.99922 * 274.99686 * 12 2 1 14 14 O 1.21284 * 119.99639 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99982 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.47024 * 180.02562 * 15 13 12 17 17 H 1.08996 * 109.47160 * 305.36317 * 16 15 13 18 18 C 1.50697 * 109.47359 * 65.36894 * 16 15 13 19 19 H 1.07996 * 119.99670 * 34.61723 * 18 16 15 20 20 C 1.37877 * 120.00013 * 214.62131 * 18 16 15 21 21 N 1.31510 * 119.99817 * 186.44408 * 20 18 16 22 22 Si 1.86796 * 120.00134 * 6.44372 * 20 18 16 23 23 H 1.48497 * 109.47130 * 85.02006 * 22 20 18 24 24 H 1.48499 * 109.47326 * 205.02225 * 22 20 18 25 25 H 1.48505 * 109.46974 * 325.01956 * 22 20 18 26 26 C 1.50701 * 109.47010 * 185.36672 * 16 15 13 27 27 C 1.38236 * 120.00118 * 296.35817 * 26 16 15 28 28 C 1.38241 * 119.99872 * 179.76670 * 27 26 16 29 29 C 1.38233 * 120.00008 * 0.50269 * 28 27 26 30 30 C 1.38236 * 120.00071 * 359.75330 * 29 28 27 31 31 C 1.38236 * 120.00025 * 359.97438 * 30 29 28 32 32 H 1.08993 * 109.47002 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47083 * 299.99960 * 1 2 3 34 34 H 1.09005 * 109.46797 * 59.99756 * 1 2 3 35 35 H 1.09001 * 109.47395 * 65.00108 * 4 2 1 36 36 H 1.09003 * 109.46850 * 185.00017 * 4 2 1 37 37 H 1.09003 * 111.12452 * 270.24166 * 8 6 5 38 38 H 1.08996 * 111.12190 * 34.40616 * 8 6 5 39 39 H 1.09005 * 110.30437 * 204.63892 * 9 8 6 40 40 H 1.08999 * 110.31575 * 82.47112 * 9 8 6 41 41 H 1.08994 * 109.83219 * 238.77621 * 11 10 9 42 42 H 1.09005 * 109.82588 * 117.80238 * 11 10 9 43 43 H 0.96996 * 120.00161 * 95.00278 * 12 2 1 44 44 H 1.09001 * 109.47507 * 59.99740 * 15 13 12 45 45 H 1.09003 * 109.47214 * 300.00028 * 15 13 12 46 46 H 0.96998 * 119.99961 * 179.97438 * 21 20 18 47 47 H 1.07997 * 120.00029 * 359.97438 * 27 26 16 48 48 H 1.07993 * 119.99667 * 180.23156 * 28 27 26 49 49 H 1.07998 * 120.00186 * 179.72152 * 29 28 27 50 50 H 1.07998 * 120.00314 * 179.97438 * 30 29 28 51 51 H 1.07996 * 119.99871 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0302 -1.3095 6 6 1.8844 -2.7928 -2.4448 7 1 2.9024 -2.5322 -2.7346 8 6 1.7573 -4.3151 -2.1645 9 6 1.5315 -4.8601 -3.5972 10 8 0.7247 -3.8689 -4.2529 11 6 0.9094 -2.5946 -3.6252 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8582 1.1584 2.4116 15 6 2.6498 -0.7286 3.5874 16 6 2.7006 0.2543 4.7588 17 1 3.2961 1.1231 4.4785 18 6 1.3019 0.6948 5.1060 19 1 0.4783 0.0029 5.0096 20 6 1.0736 1.9811 5.5467 21 7 -0.1221 2.3288 5.9698 22 14 2.4626 3.2301 5.5429 23 1 2.5588 3.8593 4.2012 24 1 2.1910 4.2757 6.5617 25 1 3.7424 2.5480 5.8627 26 6 3.3260 -0.4193 5.9530 27 6 2.7036 -1.5060 6.5383 28 6 3.2799 -2.1269 7.6307 29 6 4.4732 -1.6546 8.1443 30 6 5.0929 -0.5646 7.5623 31 6 4.5196 0.0528 6.4664 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 1.7516 -0.1583 -2.1370 36 1 3.1263 -0.7994 -1.2057 37 1 2.6758 -4.7131 -1.7330 38 1 0.9009 -4.5264 -1.5242 39 1 1.0042 -5.8134 -3.5606 40 1 2.4848 -4.9739 -4.1134 41 1 -0.0463 -2.2219 -3.2568 42 1 1.3325 -1.8884 -4.3398 43 1 2.2490 -1.6318 1.1525 44 1 3.6491 -1.1205 3.3978 45 1 1.9775 -1.5509 3.8324 46 1 -0.2826 3.2336 6.2802 47 1 1.7689 -1.8721 6.1399 48 1 2.7955 -2.9782 8.0856 49 1 4.9211 -2.1369 9.0006 50 1 6.0250 -0.1953 7.9638 51 1 5.0036 0.9046 6.0120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356351678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:13 Heat of formation + Delta-G solvation = -107.524438 kcal Electronic energy + Delta-G solvation = -30640.615360 eV Core-core repulsion = 26504.813220 eV Total energy + Delta-G solvation = -4135.802141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.07436 -39.31789 -38.47768 -37.60363 -35.02758 -33.93095 -31.87393 -31.62549 -30.69219 -30.18447 -29.12084 -28.68462 -26.53579 -25.81575 -23.00185 -22.69444 -21.90286 -21.89516 -21.18555 -20.04255 -19.16993 -17.70747 -17.10622 -16.91886 -16.55412 -16.15137 -15.85096 -15.70900 -15.01633 -14.82296 -14.63038 -14.42120 -14.09697 -14.02905 -13.73077 -13.54234 -13.18696 -12.87659 -12.73272 -12.65803 -12.49524 -12.46731 -12.33152 -12.06213 -11.87981 -11.80512 -11.69631 -11.39958 -11.09108 -10.99143 -10.86873 -10.74885 -10.52758 -10.32961 -9.98674 -9.87225 -9.85140 -9.58987 -9.17975 -8.90147 -8.59609 -8.36886 -8.18983 -7.79955 -5.96218 -3.92581 2.11368 2.16442 3.08621 3.44433 3.48268 3.49149 3.54283 3.58664 3.67944 4.02351 4.45638 4.50897 4.54279 4.60388 4.68777 4.75444 4.88848 4.97365 5.13203 5.25235 5.28858 5.33114 5.33874 5.46216 5.51591 5.53170 5.56663 5.57468 5.65107 5.69794 5.72510 5.93069 5.96145 6.03362 6.10700 6.22124 6.26196 6.34896 6.53569 6.54999 6.63489 6.71375 6.80717 6.85336 6.96796 7.04088 7.15853 7.29082 7.59649 7.74297 7.84661 8.09349 8.55439 9.02194 9.05061 9.69193 11.16773 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.002564 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.283769 B =10915.890110 C =12344.825650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.150 3.850 3 H 0.097 0.903 4 C 0.052 3.948 5 O -0.362 6.362 6 C 0.056 3.944 7 H 0.078 0.922 8 C -0.153 4.153 9 C 0.051 3.949 10 O -0.381 6.381 11 C 0.027 3.973 12 N -0.740 5.740 13 C 0.514 3.486 14 O -0.503 6.503 15 C -0.117 4.117 16 C 0.057 3.943 17 H 0.049 0.951 18 C -0.486 4.486 19 H 0.071 0.929 20 C 0.085 3.915 21 N -0.899 5.899 22 Si 0.873 3.127 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.261 1.261 26 C -0.038 4.038 27 C -0.101 4.101 28 C -0.128 4.128 29 C -0.150 4.150 30 C -0.127 4.127 31 C -0.136 4.136 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.396 0.604 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.261 0.739 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.108 0.892 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -13.042 -15.377 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 H 0.115 0.885 4 C -0.025 4.025 5 O -0.281 6.281 6 C -0.003 4.003 7 H 0.096 0.904 8 C -0.190 4.190 9 C -0.025 4.025 10 O -0.300 6.300 11 C -0.050 4.050 12 N -0.396 5.396 13 C 0.301 3.699 14 O -0.374 6.374 15 C -0.158 4.158 16 C 0.037 3.963 17 H 0.067 0.933 18 C -0.523 4.523 19 H 0.089 0.911 20 C -0.117 4.117 21 N -0.537 5.537 22 Si 0.702 3.298 23 H -0.198 1.198 24 H -0.224 1.224 25 H -0.186 1.186 26 C -0.039 4.039 27 C -0.119 4.119 28 C -0.146 4.146 29 C -0.168 4.168 30 C -0.145 4.145 31 C -0.155 4.155 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.230 0.770 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.137 0.863 48 H 0.128 0.872 49 H 0.125 0.875 50 H 0.126 0.874 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.550 -12.080 -15.281 20.891 hybrid contribution 0.967 0.544 0.100 1.114 sum 8.517 -11.536 -15.181 20.883 Atomic orbital electron populations 1.22083 0.94840 1.02562 1.02342 1.20850 0.95134 0.96531 0.83010 0.88514 1.22984 0.97335 0.83725 0.98408 1.87993 1.69967 1.26507 1.43640 1.23653 0.97493 0.92268 0.86847 0.90421 1.23316 1.04476 0.93190 0.98059 1.23354 0.95507 0.92771 0.90912 1.88436 1.67021 1.17763 1.56801 1.23684 1.00623 0.86264 0.94398 1.46157 1.69947 1.13908 1.09560 1.20832 0.77432 0.87792 0.83816 1.90735 1.46968 1.15986 1.83760 1.21670 1.00122 1.00125 0.93856 1.18112 0.98028 0.92996 0.87122 0.93336 1.20575 0.90164 0.97696 1.43898 0.91139 1.24881 0.95141 0.98061 0.93609 1.69896 1.21720 1.19233 1.42831 0.86926 0.83643 0.81525 0.77737 1.19845 1.22378 1.18623 1.20757 0.91619 0.92969 0.98535 1.20963 0.99135 0.96047 0.95804 1.21050 0.96074 1.00174 0.97271 1.20855 0.96973 0.98329 1.00651 1.20962 0.99711 0.96810 0.96987 1.21151 0.96432 1.00216 0.97665 0.91855 0.91363 0.92615 0.91999 0.92470 0.89174 0.88925 0.89205 0.91963 0.89966 0.91275 0.77004 0.91485 0.89778 0.92884 0.86284 0.87214 0.87461 0.87422 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.29 37.16 0.35 -1.86 16 2 C 0.15 1.95 2.98 -67.93 -0.20 1.74 16 3 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 4 C 0.05 0.49 5.55 37.16 0.21 0.70 16 5 O -0.36 -3.50 8.93 -35.23 -0.31 -3.82 16 6 C 0.06 0.43 3.45 -24.78 -0.09 0.35 16 7 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 8 C -0.15 -1.04 6.89 -24.48 -0.17 -1.21 16 9 C 0.05 0.35 7.78 38.19 0.30 0.64 16 10 O -0.38 -3.74 11.36 -35.23 -0.40 -4.14 16 11 C 0.03 0.23 7.58 37.88 0.29 0.52 16 12 N -0.74 -10.64 5.06 -53.81 -0.27 -10.91 16 13 C 0.51 9.82 7.54 -10.99 -0.08 9.73 16 14 O -0.50 -12.02 14.66 5.55 0.08 -11.94 16 15 C -0.12 -2.16 4.94 -27.89 -0.14 -2.30 16 16 C 0.06 1.29 1.28 -92.92 -0.12 1.17 16 17 H 0.05 1.17 4.78 -51.93 -0.25 0.92 16 18 C -0.49 -13.34 6.94 -34.44 -0.24 -13.58 16 19 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 20 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 21 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 22 Si 0.87 22.81 27.04 -169.99 -4.60 18.21 16 23 H -0.27 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 25 H -0.26 -6.32 5.15 56.52 0.29 -6.03 16 26 C -0.04 -0.80 4.77 -104.62 -0.50 -1.30 16 27 C -0.10 -1.98 8.87 -39.58 -0.35 -2.33 16 28 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 29 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 30 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 31 C -0.14 -2.69 9.13 -39.58 -0.36 -3.05 16 32 H 0.06 0.86 7.56 -51.93 -0.39 0.47 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.75 8.05 -51.93 -0.42 0.34 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.40 4.73 8.38 -40.82 -0.34 4.38 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.47 7.80 -51.93 -0.41 1.06 16 46 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 47 H 0.12 2.30 7.77 -52.49 -0.41 1.89 16 48 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 49 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 50 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 51 H 0.11 2.16 6.95 -52.49 -0.37 1.79 16 LS Contribution 411.65 15.07 6.20 6.20 Total: -1.00 -34.41 411.65 -9.47 -43.88 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.55 Total: 6.28 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -2.40 Total: -16.37 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.50 Total: -38.30 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.63 Total: -19.90 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.60 Total: 18.21 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.41 -9.47 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356351678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.643 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds