Wall clock time and date at job start Wed Apr 1 2020 04:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99750 * 2 1 4 4 C 1.38758 * 120.05342 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.93992 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05944 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.11056 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.97127 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.46685 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47021 * 59.99986 * 8 7 6 11 11 C 1.52997 * 109.47337 * 299.99858 * 8 7 6 12 12 C 1.52992 * 109.47482 * 185.00170 * 11 8 7 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 8 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.47055 * 136.05788 * 359.63591 * 16 14 13 18 18 C 1.53237 * 88.08347 * 207.19743 * 17 16 14 19 19 O 1.42900 * 114.01442 * 87.71505 * 18 17 16 20 20 C 1.50694 * 114.33027 * 220.46723 * 18 17 16 21 21 H 1.08005 * 120.00136 * 93.75747 * 20 18 17 22 22 C 1.37873 * 120.00371 * 273.76234 * 20 18 17 23 23 N 1.31513 * 120.00228 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00137 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47383 * 89.99942 * 24 22 20 26 26 H 1.48505 * 109.47040 * 209.99584 * 24 22 20 27 27 H 1.48494 * 109.47172 * 329.99819 * 24 22 20 28 28 C 1.47065 * 136.05284 * 179.97438 * 16 14 13 29 29 C 1.38168 * 120.05218 * 0.23152 * 7 6 5 30 30 H 1.09010 * 109.46809 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47415 * 300.00244 * 1 2 3 32 32 H 1.08998 * 109.47315 * 60.00841 * 1 2 3 33 33 H 1.07998 * 120.02600 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.97314 * 180.02562 * 5 4 3 35 35 H 1.07993 * 119.94371 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47338 * 59.99794 * 10 8 7 37 37 H 1.08998 * 109.47414 * 179.97438 * 10 8 7 38 38 H 1.09003 * 109.47419 * 299.99584 * 10 8 7 39 39 H 1.09002 * 109.47153 * 64.99954 * 11 8 7 40 40 H 1.09001 * 109.46832 * 305.00144 * 11 8 7 41 41 H 1.09002 * 109.47103 * 59.99753 * 12 11 8 42 42 H 1.08998 * 109.46862 * 300.00565 * 12 11 8 43 43 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 44 44 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 45 45 H 1.08998 * 113.47157 * 321.92905 * 17 16 14 46 46 H 1.09004 * 113.47311 * 92.37205 * 17 16 14 47 47 H 0.96704 * 114.00181 * 86.39367 * 19 18 17 48 48 H 0.96993 * 120.00699 * 180.02562 * 23 22 20 49 49 H 1.09002 * 113.46709 * 267.62644 * 28 16 14 50 50 H 1.09004 * 113.47064 * 38.07167 * 28 16 14 51 51 H 1.08004 * 120.02520 * 179.74432 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3017 3.6759 -0.0016 7 6 4.0559 2.5173 -0.0021 8 6 5.5607 2.5984 -0.0033 9 1 5.9788 1.5918 -0.0041 10 6 6.0320 3.3461 1.2455 11 6 6.0302 3.3460 -1.2529 12 6 7.5585 3.3203 -1.3186 13 6 8.0279 4.0673 -2.5685 14 6 9.5334 4.0425 -2.6328 15 8 10.1682 3.4821 -1.7646 16 7 10.1741 4.6423 -3.6557 17 6 9.7803 5.3895 -4.8595 18 6 11.0842 4.9212 -5.5142 19 8 10.9818 3.6592 -6.1767 20 6 11.7790 5.9750 -6.3374 21 1 12.5494 6.5871 -5.8922 22 6 11.4311 6.1578 -7.6589 23 7 10.4933 5.4123 -8.2013 24 14 12.2919 7.4646 -8.6792 25 1 13.4869 6.8742 -9.3337 26 1 11.3606 7.9752 -9.7172 27 1 12.7123 8.5834 -7.7978 28 6 11.5747 4.8323 -4.0622 29 6 3.4310 1.2850 -0.0070 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 0.2126 2.3203 -0.0005 34 1 1.3338 4.5114 -0.0011 35 1 3.7919 4.6382 -0.0024 36 1 5.6975 2.8136 2.1358 37 1 7.1204 3.4045 1.2450 38 1 5.6139 4.3528 1.2458 39 1 5.6857 4.3792 -1.2091 40 1 5.6202 2.8637 -2.1403 41 1 7.9029 2.2871 -1.3624 42 1 7.9684 3.8025 -0.4312 43 1 7.6834 5.1006 -2.5252 44 1 7.6180 3.5846 -3.4557 45 1 8.8871 4.9940 -5.3431 46 1 9.7346 6.4676 -4.7058 47 1 10.6727 3.7189 -7.0910 48 1 10.2487 5.5406 -9.1311 49 1 12.0114 5.7606 -3.6939 50 1 12.2044 3.9638 -3.8690 51 1 4.0206 0.3801 -0.0116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356543936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:59 Heat of formation + Delta-G solvation = -82.103174 kcal Electronic energy + Delta-G solvation = -29460.198238 eV Core-core repulsion = 25325.498446 eV Total energy + Delta-G solvation = -4134.699792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.49983 -39.59153 -38.48279 -37.53374 -35.89052 -33.98723 -32.66150 -32.19833 -31.01324 -29.56213 -28.75955 -27.64356 -26.95474 -25.26980 -25.06702 -23.65021 -22.87795 -21.53919 -20.07179 -19.99089 -18.21481 -17.85052 -17.38977 -16.56131 -16.32450 -16.08720 -16.04899 -15.63779 -15.43047 -15.04128 -14.87550 -14.49896 -14.19818 -13.93189 -13.79451 -13.58843 -13.37135 -13.00662 -12.81313 -12.63947 -12.45473 -12.39188 -12.12777 -11.94185 -11.84941 -11.68031 -11.56045 -11.44583 -11.28699 -11.09545 -11.07679 -10.99741 -10.81458 -10.69559 -10.48676 -10.39605 -10.25548 -9.60081 -9.16107 -9.03321 -8.77258 -8.44472 -8.38626 -7.81885 -6.41215 -4.51575 1.07087 1.20817 2.94042 3.13899 3.21845 3.23877 3.27161 3.49612 3.62310 4.17211 4.42066 4.49586 4.66499 4.75803 4.76666 4.78202 4.82449 4.93868 5.02744 5.07329 5.09789 5.14820 5.24410 5.31855 5.34663 5.51042 5.53894 5.65473 5.70286 5.71574 5.81966 5.82254 5.93236 5.96796 6.01684 6.04068 6.05256 6.20106 6.21530 6.32421 6.42475 6.43894 6.47574 6.52670 6.54488 6.67200 6.70760 7.10418 7.11274 7.62081 7.80240 8.51241 8.57817 8.82072 9.19954 9.48931 10.65450 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.001694 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.105711 B =16526.708198 C =17220.896880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.216 4.216 5 C -0.079 4.079 6 C -0.151 4.151 7 C -0.031 4.031 8 C -0.054 4.054 9 H 0.081 0.919 10 C -0.146 4.146 11 C -0.111 4.111 12 C -0.102 4.102 13 C -0.132 4.132 14 C 0.533 3.467 15 O -0.567 6.567 16 N -0.637 5.637 17 C 0.073 3.927 18 C 0.239 3.761 19 O -0.572 6.572 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.072 3.928 23 N -0.899 5.899 24 Si 0.909 3.091 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.271 1.271 28 C 0.105 3.895 29 C -0.150 4.150 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.394 0.606 48 H 0.274 0.726 49 H 0.084 0.916 50 H 0.065 0.935 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.810 -3.697 14.365 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.235 4.235 5 C -0.097 4.097 6 C -0.169 4.169 7 C -0.031 4.031 8 C -0.072 4.072 9 H 0.100 0.900 10 C -0.203 4.203 11 C -0.148 4.148 12 C -0.140 4.140 13 C -0.172 4.172 14 C 0.323 3.677 15 O -0.448 6.448 16 N -0.370 5.370 17 C -0.051 4.051 18 C 0.197 3.803 19 O -0.385 6.385 20 C -0.571 4.571 21 H 0.091 0.909 22 C -0.131 4.131 23 N -0.539 5.539 24 Si 0.736 3.264 25 H -0.202 1.202 26 H -0.209 1.209 27 H -0.195 1.195 28 C -0.017 4.017 29 C -0.169 4.169 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.250 0.750 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.083 0.917 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.414 -4.538 15.379 25.180 hybrid contribution -0.338 1.116 -1.230 1.695 sum -19.752 -3.423 14.149 24.537 Atomic orbital electron populations 1.23043 0.78465 1.03896 1.01301 1.86075 1.21329 1.27085 1.88782 1.19013 0.92304 0.84091 0.96456 1.21194 0.99852 0.92495 1.09953 1.20921 0.94637 0.96896 0.97288 1.20943 0.93524 0.98316 1.04088 1.19733 0.95638 0.92035 0.95721 1.20209 0.89851 1.01001 0.96138 0.90028 1.21899 1.01896 1.00082 0.96415 1.21672 0.95751 1.00455 0.96925 1.21375 0.93980 1.01424 0.97234 1.21560 0.92575 1.02594 1.00487 1.20130 0.89729 0.78307 0.79492 1.90622 1.68980 1.46355 1.38846 1.49759 1.10805 1.52905 1.23535 1.24134 1.02807 0.95721 0.82397 1.19510 0.89671 0.83428 0.87734 1.86048 1.89880 1.29467 1.33103 1.21438 1.21763 1.17913 0.96012 0.90941 1.25081 0.94117 0.96231 0.97649 1.69258 1.30025 1.40034 1.14602 0.86311 0.79356 0.81144 0.79596 1.20227 1.20913 1.19538 1.23309 0.83690 1.00344 0.94359 1.20359 0.91240 0.98321 1.06934 0.88273 0.92737 0.92648 0.85757 0.85879 0.85780 0.92756 0.91444 0.92435 0.91623 0.91614 0.91224 0.91021 0.89550 0.89278 0.91788 0.90169 0.75002 0.91575 0.89830 0.91667 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.14 10.50 -19.44 -0.20 -3.35 16 3 C 0.13 1.30 6.69 -39.22 -0.26 1.04 16 4 C -0.22 -1.92 9.04 -39.43 -0.36 -2.27 16 5 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 6 C -0.15 -1.40 8.76 -39.56 -0.35 -1.74 16 7 C -0.03 -0.31 4.78 -104.65 -0.50 -0.81 16 8 C -0.05 -0.52 2.56 -91.78 -0.24 -0.75 16 9 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 10 C -0.15 -1.32 8.76 37.15 0.33 -1.00 16 11 C -0.11 -1.15 4.42 -26.74 -0.12 -1.27 16 12 C -0.10 -1.33 4.26 -26.74 -0.11 -1.45 16 13 C -0.13 -1.99 5.53 -27.88 -0.15 -2.15 16 14 C 0.53 10.75 8.08 -10.98 -0.09 10.66 16 15 O -0.57 -13.00 16.76 5.56 0.09 -12.91 16 16 N -0.64 -13.54 3.69 -185.39 -0.68 -14.23 16 17 C 0.07 1.54 7.82 -8.65 -0.07 1.48 16 18 C 0.24 5.73 1.57 -91.39 -0.14 5.58 16 19 O -0.57 -14.84 13.53 -35.23 -0.48 -15.32 16 20 C -0.53 -13.27 8.69 -34.44 -0.30 -13.57 16 21 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 22 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 23 N -0.90 -22.58 11.01 55.43 0.61 -21.97 16 24 Si 0.91 19.23 29.54 -169.99 -5.02 14.21 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 C 0.11 2.33 8.04 -8.50 -0.07 2.26 16 29 C -0.15 -1.58 9.61 -39.43 -0.38 -1.96 16 30 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.05 0.25 7.66 -51.93 -0.40 -0.14 16 32 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 33 H 0.12 0.83 6.30 -52.49 -0.33 0.50 16 34 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.12 1.00 7.15 -52.49 -0.38 0.63 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.65 6.57 -51.93 -0.34 0.31 16 38 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 39 H 0.07 0.63 7.57 -51.93 -0.39 0.24 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 42 H 0.07 0.96 6.52 -51.93 -0.34 0.62 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 47 H 0.39 10.27 6.33 45.56 0.29 10.55 16 48 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 49 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 50 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 51 H 0.13 1.28 7.94 -52.48 -0.42 0.87 16 LS Contribution 414.64 15.07 6.25 6.25 Total: -1.00 -29.66 414.64 -9.43 -39.09 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.68 Total: 12.43 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.31 Total: -4.20 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.07 Total: -36.20 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.59 Total: -31.57 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.66 -9.43 -39.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356543936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.014 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds