Wall clock time and date at job start Wed Apr 1 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99802 * 2 1 4 4 C 1.52997 * 109.47051 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.46272 * 65.02584 * 4 3 2 6 6 C 1.53046 * 109.45978 * 185.00113 * 4 3 2 7 7 C 1.53186 * 109.31052 * 181.38293 * 6 4 3 8 8 N 1.46923 * 108.77703 * 305.36160 * 7 6 4 9 9 C 1.34776 * 120.63258 * 233.58614 * 8 7 6 10 10 O 1.21279 * 120.00275 * 359.97438 * 9 8 7 11 11 C 1.50704 * 120.00308 * 180.02562 * 9 8 7 12 12 C 1.52994 * 109.47500 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.47161 * 54.05111 * 12 11 9 14 14 C 1.50705 * 109.46958 * 294.05716 * 12 11 9 15 15 H 1.08001 * 119.99673 * 330.07741 * 14 12 11 16 16 C 1.37874 * 119.99735 * 150.08462 * 14 12 11 17 17 N 1.31506 * 120.00441 * 6.56154 * 16 14 12 18 18 Si 1.86806 * 119.99498 * 186.56721 * 16 14 12 19 19 H 1.48501 * 109.47018 * 269.99324 * 18 16 14 20 20 H 1.48495 * 109.47509 * 29.99808 * 18 16 14 21 21 H 1.48502 * 109.47060 * 149.99826 * 18 16 14 22 22 C 1.50697 * 109.47396 * 174.05264 * 12 11 9 23 23 C 1.38240 * 119.99558 * 64.30176 * 22 12 11 24 24 C 1.38233 * 119.99699 * 179.81077 * 23 22 12 25 25 C 1.38239 * 120.00485 * 0.39662 * 24 23 22 26 26 C 1.38243 * 119.99212 * 359.85622 * 25 24 23 27 27 C 1.38224 * 120.00292 * 359.95752 * 26 25 24 28 28 C 1.46926 * 118.73811 * 53.86436 * 8 7 6 29 29 C 1.53046 * 109.45819 * 305.06357 * 4 3 2 30 30 H 1.09006 * 109.46879 * 299.99212 * 1 2 3 31 31 H 1.08991 * 109.47703 * 59.99700 * 1 2 3 32 32 H 1.09001 * 109.47008 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47107 * 60.00487 * 3 2 1 34 34 H 1.09000 * 109.47206 * 300.00219 * 3 2 1 35 35 H 0.96702 * 114.00027 * 299.97275 * 5 4 3 36 36 H 1.09003 * 109.49726 * 61.43077 * 6 4 3 37 37 H 1.08993 * 109.49668 * 301.33773 * 6 4 3 38 38 H 1.09010 * 109.58729 * 185.57580 * 7 6 4 39 39 H 1.08997 * 109.58911 * 65.15294 * 7 6 4 40 40 H 1.08993 * 109.47032 * 59.99613 * 11 9 8 41 41 H 1.09003 * 109.46794 * 299.99903 * 11 9 8 42 42 H 0.97000 * 120.00571 * 354.73144 * 17 16 14 43 43 H 1.07995 * 120.00408 * 359.97438 * 23 22 12 44 44 H 1.08009 * 120.00178 * 180.23121 * 24 23 22 45 45 H 1.07990 * 120.00623 * 179.83645 * 25 24 23 46 46 H 1.08001 * 119.99479 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.99914 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.58458 * 65.92639 * 28 8 7 49 49 H 1.08999 * 109.58803 * 186.35098 * 28 8 7 50 50 H 1.08996 * 109.50034 * 298.56790 * 29 4 3 51 51 H 1.09004 * 109.49433 * 58.67129 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9646 0.5803 -1.2223 6 6 4.1572 2.5775 0.1252 7 6 5.6838 2.4558 0.0894 8 7 6.1073 1.5097 1.1306 9 6 7.0327 1.8632 2.0445 10 8 7.5246 2.9713 2.0121 11 6 7.4571 0.8813 3.1060 12 6 8.5094 1.5287 4.0084 13 1 8.1236 2.4707 4.3984 14 6 9.7618 1.7902 3.2120 15 1 10.0186 1.1473 2.3830 16 6 10.5797 2.8500 3.5417 17 7 10.3389 3.5539 4.6261 18 14 12.0299 3.2861 2.4480 19 1 13.2321 2.5401 2.8991 20 1 11.7182 2.9198 1.0431 21 1 12.2924 4.7453 2.5324 22 6 8.8268 0.6029 5.1542 23 6 9.4152 -0.6238 4.9091 24 6 9.7099 -1.4714 5.9605 25 6 9.4089 -1.0959 7.2564 26 6 8.8157 0.1286 7.5010 27 6 8.5245 0.9778 6.4500 28 6 5.5074 0.1687 1.1529 29 6 3.9787 0.3178 1.1802 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.6084 -0.3067 -1.3686 36 1 3.8502 3.0291 1.0685 37 1 3.8224 3.2015 -0.7034 38 1 6.1326 3.4312 0.2776 39 1 5.9984 2.0889 -0.8876 40 1 7.8795 -0.0052 2.6329 41 1 6.5916 0.5964 3.7042 42 1 9.5436 3.3771 5.1526 43 1 9.6469 -0.9188 3.8964 44 1 10.1730 -2.4282 5.7694 45 1 9.6367 -1.7592 8.0776 46 1 8.5801 0.4218 8.5134 47 1 8.0607 1.9342 6.6411 48 1 5.8079 -0.3809 0.2609 49 1 5.8397 -0.3655 2.0430 50 1 3.6734 0.7908 2.1135 51 1 3.5169 -0.6665 1.1023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356567581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:20 Heat of formation + Delta-G solvation = -111.227238 kcal Electronic energy + Delta-G solvation = -31568.100648 eV Core-core repulsion = 27432.137942 eV Total energy + Delta-G solvation = -4135.962706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.24214 -38.91596 -38.27483 -37.22369 -35.16250 -34.22491 -32.24302 -31.37372 -30.97143 -30.09769 -29.00351 -28.14855 -26.32415 -25.01612 -23.42062 -23.26631 -22.46052 -21.64609 -20.66109 -19.86266 -18.59137 -16.95994 -16.93218 -16.73665 -16.51918 -16.16012 -15.81008 -15.46172 -15.07680 -15.00772 -14.48650 -14.27797 -14.03542 -13.76996 -13.63346 -13.53870 -13.25802 -12.92223 -12.70028 -12.51305 -12.43019 -12.20774 -12.14233 -11.94709 -11.80164 -11.72791 -11.43683 -11.26707 -11.22582 -10.87577 -10.67462 -10.56563 -10.40846 -10.11891 -10.10307 -10.02508 -10.00586 -9.59950 -8.93968 -8.60015 -8.24582 -8.16748 -8.12745 -7.61314 -6.20166 -3.87301 2.20310 2.26231 3.27365 3.46156 3.47686 3.52624 3.59545 3.72725 4.00552 4.49069 4.56442 4.62808 4.68897 4.70997 4.89913 4.92871 5.05242 5.08810 5.11942 5.26755 5.29884 5.31754 5.51528 5.56646 5.60656 5.61011 5.64567 5.66487 5.74489 5.77819 5.85925 5.98308 6.01382 6.07779 6.12388 6.18038 6.26953 6.32993 6.43912 6.68552 6.69611 6.79630 6.92104 6.99445 7.22160 7.24021 7.40143 7.50369 7.74330 7.87175 7.96848 8.26110 8.54634 8.99935 9.03846 9.81744 11.20307 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.003122 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.244237 B = 8967.634223 C =10671.123038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.034 3.966 4 C 0.143 3.857 5 O -0.551 6.551 6 C -0.119 4.119 7 C 0.121 3.879 8 N -0.628 5.628 9 C 0.517 3.483 10 O -0.500 6.500 11 C -0.115 4.115 12 C 0.072 3.928 13 H 0.050 0.950 14 C -0.566 4.566 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.907 5.907 18 Si 1.066 2.934 19 H -0.292 1.292 20 H -0.290 1.290 21 H -0.286 1.286 22 C -0.030 4.030 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.130 4.130 28 C 0.116 3.884 29 C -0.156 4.156 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.379 0.621 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.270 0.730 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.073 0.927 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.567 -9.134 -6.771 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.043 4.043 4 C 0.102 3.898 5 O -0.357 6.357 6 C -0.157 4.157 7 C -0.002 4.002 8 N -0.366 5.366 9 C 0.306 3.694 10 O -0.372 6.372 11 C -0.155 4.155 12 C 0.053 3.947 13 H 0.068 0.932 14 C -0.604 4.604 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.542 5.542 18 Si 0.896 3.104 19 H -0.219 1.219 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.031 4.031 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.172 4.172 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.007 4.007 29 C -0.194 4.194 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.227 0.773 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.133 0.867 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.086 0.914 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.524 -7.064 -6.959 19.271 hybrid contribution -1.937 -1.434 0.225 2.421 sum -18.461 -8.498 -6.734 21.410 Atomic orbital electron populations 1.22742 0.80779 1.02821 1.00031 1.87800 1.19946 1.27754 1.95455 1.23357 0.94754 0.85113 1.01059 1.21145 0.89496 0.94138 0.85031 1.86523 1.74334 1.35273 1.39543 1.21883 0.97112 0.93851 1.02864 1.21287 0.92279 0.95245 0.91377 1.48255 1.42807 1.14033 1.31475 1.20873 0.77624 0.89182 0.81750 1.90729 1.51933 1.22090 1.72410 1.21697 0.99542 0.98080 0.96169 1.17876 0.94398 0.92700 0.89736 0.93158 1.21550 1.08244 1.14819 1.15770 0.93661 1.25573 1.01679 0.93115 0.96976 1.70724 1.27077 1.42695 1.13746 0.83596 0.75138 0.76462 0.75249 1.21876 1.21619 1.21128 1.20834 0.92991 0.93717 0.95526 1.20920 0.99004 0.94277 0.98445 1.21012 1.01130 0.99393 0.93200 1.20820 1.02809 0.97185 0.96343 1.20962 1.00319 0.94788 0.98189 1.21061 1.01740 0.99184 0.92868 1.21615 0.91679 0.84699 1.02722 1.22587 0.96862 1.01262 0.98701 0.94030 0.94076 0.89520 0.92455 0.92427 0.77308 0.90221 0.90317 0.88991 0.91355 0.90357 0.91840 0.91874 0.86745 0.87457 0.87603 0.87491 0.87212 0.91412 0.89614 0.90802 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.37 9.46 -40.08 -0.38 -3.75 16 3 C 0.03 0.29 5.09 37.16 0.19 0.48 16 4 C 0.14 1.43 0.80 -90.57 -0.07 1.36 16 5 O -0.55 -5.73 11.70 -40.08 -0.47 -6.19 16 6 C -0.12 -1.34 5.11 -26.61 -0.14 -1.47 16 7 C 0.12 1.77 6.19 -3.72 -0.02 1.75 16 8 N -0.63 -10.07 2.97 -172.51 -0.51 -10.58 16 9 C 0.52 10.65 7.45 -10.98 -0.08 10.57 16 10 O -0.50 -12.70 14.43 5.56 0.08 -12.62 16 11 C -0.11 -2.27 3.29 -27.88 -0.09 -2.37 16 12 C 0.07 1.74 1.31 -92.93 -0.12 1.62 16 13 H 0.05 1.37 6.24 -51.93 -0.32 1.05 16 14 C -0.57 -15.60 6.40 -34.44 -0.22 -15.82 16 15 H 0.05 1.26 7.82 -52.49 -0.41 0.85 16 16 C 0.03 0.93 5.45 -17.82 -0.10 0.84 16 17 N -0.91 -27.92 13.63 55.43 0.76 -27.16 16 18 Si 1.07 26.76 29.91 -169.99 -5.08 21.68 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 23 C -0.11 -2.23 8.88 -39.58 -0.35 -2.58 16 24 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 25 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 26 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 27 C -0.13 -2.75 9.67 -39.59 -0.38 -3.13 16 28 C 0.12 1.45 6.13 -3.49 -0.02 1.43 16 29 C -0.16 -1.60 4.92 -26.39 -0.13 -1.73 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.38 2.97 8.72 45.56 0.40 3.37 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.53 7.01 -51.92 -0.36 1.17 16 39 H 0.07 1.00 7.81 -51.93 -0.41 0.59 16 40 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 41 H 0.06 1.10 7.70 -51.93 -0.40 0.70 16 42 H 0.27 8.21 6.68 -40.82 -0.27 7.94 16 43 H 0.11 2.30 7.80 -52.49 -0.41 1.89 16 44 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 45 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.11 2.28 7.95 -52.49 -0.42 1.87 16 48 H 0.07 0.81 7.81 -51.93 -0.41 0.41 16 49 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 50 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.08 0.77 7.51 -51.93 -0.39 0.38 16 LS Contribution 405.97 15.07 6.12 6.12 Total: -1.00 -34.37 405.97 -9.16 -43.54 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.55 Total: 6.40 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.12 Total: -17.42 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.24 Total: -37.75 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.77 Total: -22.56 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -5.08 Total: 21.68 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.37 -9.16 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356567581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.691 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds