Wall clock time and date at job start Wed Apr 1 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99802 * 2 1 4 4 C 1.52997 * 109.47051 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.46272 * 65.02584 * 4 3 2 6 6 C 1.53046 * 109.45978 * 185.00113 * 4 3 2 7 7 C 1.53186 * 109.31052 * 181.38293 * 6 4 3 8 8 N 1.46923 * 108.77703 * 305.36160 * 7 6 4 9 9 C 1.34776 * 120.63258 * 233.58614 * 8 7 6 10 10 O 1.21279 * 120.00275 * 359.97438 * 9 8 7 11 11 C 1.50704 * 120.00308 * 180.02562 * 9 8 7 12 12 C 1.52994 * 109.47500 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.47161 * 54.05111 * 12 11 9 14 14 C 1.50705 * 109.46958 * 294.05716 * 12 11 9 15 15 H 1.08001 * 119.99673 * 330.07741 * 14 12 11 16 16 C 1.37874 * 119.99735 * 150.08462 * 14 12 11 17 17 N 1.31506 * 120.00441 * 6.56154 * 16 14 12 18 18 Si 1.86806 * 119.99498 * 186.56721 * 16 14 12 19 19 H 1.48501 * 109.47018 * 269.99324 * 18 16 14 20 20 H 1.48495 * 109.47509 * 29.99808 * 18 16 14 21 21 H 1.48502 * 109.47060 * 149.99826 * 18 16 14 22 22 C 1.50697 * 109.47396 * 174.05264 * 12 11 9 23 23 C 1.38240 * 119.99558 * 64.30176 * 22 12 11 24 24 C 1.38233 * 119.99699 * 179.81077 * 23 22 12 25 25 C 1.38239 * 120.00485 * 0.39662 * 24 23 22 26 26 C 1.38243 * 119.99212 * 359.85622 * 25 24 23 27 27 C 1.38224 * 120.00292 * 359.95752 * 26 25 24 28 28 C 1.46926 * 118.73811 * 53.86436 * 8 7 6 29 29 C 1.53046 * 109.45819 * 305.06357 * 4 3 2 30 30 H 1.09006 * 109.46879 * 299.99212 * 1 2 3 31 31 H 1.08991 * 109.47703 * 59.99700 * 1 2 3 32 32 H 1.09001 * 109.47008 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47107 * 60.00487 * 3 2 1 34 34 H 1.09000 * 109.47206 * 300.00219 * 3 2 1 35 35 H 0.96702 * 114.00027 * 299.97275 * 5 4 3 36 36 H 1.09003 * 109.49726 * 61.43077 * 6 4 3 37 37 H 1.08993 * 109.49668 * 301.33773 * 6 4 3 38 38 H 1.09010 * 109.58729 * 185.57580 * 7 6 4 39 39 H 1.08997 * 109.58911 * 65.15294 * 7 6 4 40 40 H 1.08993 * 109.47032 * 59.99613 * 11 9 8 41 41 H 1.09003 * 109.46794 * 299.99903 * 11 9 8 42 42 H 0.97000 * 120.00571 * 354.73144 * 17 16 14 43 43 H 1.07995 * 120.00408 * 359.97438 * 23 22 12 44 44 H 1.08009 * 120.00178 * 180.23121 * 24 23 22 45 45 H 1.07990 * 120.00623 * 179.83645 * 25 24 23 46 46 H 1.08001 * 119.99479 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.99914 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.58458 * 65.92639 * 28 8 7 49 49 H 1.08999 * 109.58803 * 186.35098 * 28 8 7 50 50 H 1.08996 * 109.50034 * 298.56790 * 29 4 3 51 51 H 1.09004 * 109.49433 * 58.67129 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9646 0.5803 -1.2223 6 6 4.1572 2.5775 0.1252 7 6 5.6838 2.4558 0.0894 8 7 6.1073 1.5097 1.1306 9 6 7.0327 1.8632 2.0445 10 8 7.5246 2.9713 2.0121 11 6 7.4571 0.8813 3.1060 12 6 8.5094 1.5287 4.0084 13 1 8.1236 2.4707 4.3984 14 6 9.7618 1.7902 3.2120 15 1 10.0186 1.1473 2.3830 16 6 10.5797 2.8500 3.5417 17 7 10.3389 3.5539 4.6261 18 14 12.0299 3.2861 2.4480 19 1 13.2321 2.5401 2.8991 20 1 11.7182 2.9198 1.0431 21 1 12.2924 4.7453 2.5324 22 6 8.8268 0.6029 5.1542 23 6 9.4152 -0.6238 4.9091 24 6 9.7099 -1.4714 5.9605 25 6 9.4089 -1.0959 7.2564 26 6 8.8157 0.1286 7.5010 27 6 8.5245 0.9778 6.4500 28 6 5.5074 0.1687 1.1529 29 6 3.9787 0.3178 1.1802 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.6084 -0.3067 -1.3686 36 1 3.8502 3.0291 1.0685 37 1 3.8224 3.2015 -0.7034 38 1 6.1326 3.4312 0.2776 39 1 5.9984 2.0889 -0.8876 40 1 7.8795 -0.0052 2.6329 41 1 6.5916 0.5964 3.7042 42 1 9.5436 3.3771 5.1526 43 1 9.6469 -0.9188 3.8964 44 1 10.1730 -2.4282 5.7694 45 1 9.6367 -1.7592 8.0776 46 1 8.5801 0.4218 8.5134 47 1 8.0607 1.9342 6.6411 48 1 5.8079 -0.3809 0.2609 49 1 5.8397 -0.3655 2.0430 50 1 3.6734 0.7908 2.1135 51 1 3.5169 -0.6665 1.1023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356567581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:19 Heat of formation + Delta-G solvation = -133.862803 kcal Electronic energy + Delta-G solvation = -31569.082200 eV Core-core repulsion = 27432.137942 eV Total energy + Delta-G solvation = -4136.944258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.42131 -40.24735 -39.62052 -38.09275 -36.38007 -36.01121 -33.56759 -32.93774 -32.12512 -31.60787 -30.44487 -29.05044 -27.30499 -26.58668 -24.89922 -24.42126 -23.72242 -23.16507 -21.88014 -21.30544 -19.96858 -18.73285 -18.22063 -17.68530 -17.39542 -17.29225 -16.82952 -16.76872 -16.44552 -15.97652 -15.81986 -15.66019 -15.61668 -15.24575 -14.94539 -14.65325 -14.47297 -14.23628 -14.10771 -14.02898 -13.79804 -13.48957 -13.36981 -13.14015 -13.00419 -12.87577 -12.65874 -12.57679 -12.40430 -12.24345 -12.15470 -12.06843 -11.96308 -11.71440 -11.52950 -11.45104 -10.87115 -10.69084 -10.66249 -10.58899 -10.29743 -9.64255 -9.53764 -9.27213 -8.45531 -6.10856 0.67753 0.73903 1.46348 1.58627 1.72186 1.85311 2.11716 2.60103 2.69136 3.10346 3.22641 3.37500 3.61699 3.73014 3.82559 3.99597 4.06560 4.12710 4.27438 4.28318 4.30136 4.32532 4.35647 4.42490 4.46307 4.52242 4.56562 4.56846 4.58067 4.65831 4.70789 4.81571 4.83468 4.85090 4.85583 4.88448 4.95128 5.05411 5.12732 5.22892 5.26286 5.40489 5.42233 5.69745 5.74540 5.82495 5.94512 6.12673 6.23987 6.30374 6.38735 6.53399 6.78295 6.85194 7.44800 7.64409 8.94900 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.003122 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.244237 B = 8967.634223 C =10671.123038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.041 3.959 4 C 0.146 3.854 5 O -0.562 6.562 6 C -0.113 4.113 7 C 0.118 3.882 8 N -0.618 5.618 9 C 0.511 3.489 10 O -0.562 6.562 11 C -0.105 4.105 12 C 0.075 3.925 13 H 0.006 0.994 14 C -0.557 4.557 15 H 0.036 0.964 16 C -0.025 4.025 17 N -0.941 5.941 18 Si 1.102 2.898 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.290 1.290 22 C -0.055 4.055 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.124 4.124 27 C -0.153 4.153 28 C 0.110 3.890 29 C -0.147 4.147 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.391 0.609 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.258 0.742 43 H 0.113 0.887 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.135 0.865 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.070 0.930 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.805 -12.375 -6.734 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.036 4.036 4 C 0.105 3.895 5 O -0.370 6.370 6 C -0.151 4.151 7 C -0.004 4.004 8 N -0.353 5.353 9 C 0.301 3.699 10 O -0.439 6.439 11 C -0.145 4.145 12 C 0.056 3.944 13 H 0.025 0.975 14 C -0.595 4.595 15 H 0.055 0.945 16 C -0.223 4.223 17 N -0.580 5.580 18 Si 0.927 3.073 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.217 1.217 22 C -0.055 4.055 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.162 4.162 26 C -0.142 4.142 27 C -0.171 4.171 28 C -0.012 4.012 29 C -0.185 4.185 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.153 0.847 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.109 0.891 50 H 0.088 0.912 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.817 -10.379 -6.951 21.760 hybrid contribution -1.676 -0.556 0.198 1.777 sum -19.493 -10.935 -6.753 23.348 Atomic orbital electron populations 1.22909 0.79442 1.03892 1.00645 1.87764 1.21373 1.27541 1.95578 1.23203 0.93334 0.85436 1.01633 1.21028 0.90643 0.92940 0.84850 1.86498 1.74731 1.36282 1.39464 1.21818 0.94217 0.95512 1.03586 1.21347 0.94781 0.93558 0.90736 1.48254 1.41243 1.15656 1.30180 1.21048 0.77977 0.88403 0.82513 1.90704 1.54662 1.24396 1.74187 1.21560 0.99409 0.97796 0.95769 1.17686 0.93950 0.91918 0.90847 0.97546 1.21797 1.08778 1.13765 1.15146 0.94526 1.26729 1.04320 0.93690 0.97573 1.70813 1.27496 1.44363 1.15308 0.83127 0.73671 0.76141 0.74384 1.19820 1.20716 1.21655 1.20605 0.95184 0.94634 0.95097 1.20999 0.99571 0.94155 0.99449 1.21407 0.99879 1.00128 0.92712 1.21311 1.00647 0.96894 0.97337 1.21299 0.99496 0.94775 0.98666 1.21117 1.03022 0.99450 0.93551 1.21903 0.93225 0.82584 1.03510 1.22528 0.94839 1.02393 0.98759 0.93551 0.93343 0.88298 0.91942 0.91839 0.75907 0.90292 0.88712 0.91864 0.91136 0.88986 0.89300 0.93159 0.86933 0.83897 0.83492 0.84690 0.88735 0.90320 0.89119 0.91153 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -5.85 9.46 -144.35 -1.37 -7.21 16 3 C 0.04 0.60 5.09 71.98 0.37 0.97 16 4 C 0.15 2.64 0.80 -10.76 -0.01 2.64 16 5 O -0.56 -10.44 11.70 -144.35 -1.69 -12.13 16 6 C -0.11 -2.46 5.11 30.67 0.16 -2.31 16 7 C 0.12 3.55 6.19 86.36 0.53 4.08 16 8 N -0.62 -20.05 2.97 -818.08 -2.43 -22.47 16 9 C 0.51 21.96 7.45 87.66 0.65 22.62 16 10 O -0.56 -30.55 14.43 -3.03 -0.04 -30.60 16 11 C -0.11 -4.28 3.29 29.85 0.10 -4.18 16 12 C 0.08 3.81 1.31 -12.29 -0.02 3.79 16 13 H 0.01 0.37 6.24 -2.38 -0.01 0.36 16 14 C -0.56 -31.93 6.40 25.60 0.16 -31.76 16 15 H 0.04 2.10 7.82 -2.91 -0.02 2.08 16 16 C -0.02 -1.50 5.45 84.66 0.46 -1.04 16 17 N -0.94 -60.99 13.63 21.44 0.29 -60.70 16 18 Si 1.10 55.54 29.91 68.60 2.05 57.59 16 19 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 22 C -0.05 -2.48 4.77 -19.87 -0.09 -2.58 16 23 C -0.12 -4.96 8.88 22.27 0.20 -4.76 16 24 C -0.12 -4.06 10.05 22.27 0.22 -3.84 16 25 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16 26 C -0.12 -4.35 10.05 22.27 0.22 -4.13 16 27 C -0.15 -6.57 9.67 22.27 0.22 -6.36 16 28 C 0.11 2.58 6.13 86.51 0.53 3.11 16 29 C -0.15 -2.72 4.92 30.82 0.15 -2.57 16 30 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.39 5.11 8.72 -74.06 -0.65 4.46 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.26 7.01 -2.38 -0.02 2.25 16 39 H 0.07 2.08 7.81 -2.39 -0.02 2.06 16 40 H 0.09 3.45 7.66 -2.39 -0.02 3.43 16 41 H 0.09 3.10 7.70 -2.39 -0.02 3.08 16 42 H 0.26 16.81 6.68 -92.71 -0.62 16.19 16 43 H 0.11 4.45 7.80 -2.91 -0.02 4.42 16 44 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 45 H 0.15 3.40 8.06 -2.92 -0.02 3.37 16 46 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 47 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 48 H 0.08 1.73 7.81 -2.39 -0.02 1.71 16 49 H 0.09 2.05 5.93 -2.39 -0.01 2.03 16 50 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.10 1.57 7.51 -2.39 -0.02 1.56 16 Total: -1.00 -79.46 405.97 2.57 -76.89 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.42 Total: 27.69 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 5.33 Total: -29.06 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -2.13 Total: -83.18 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -3.10 Total: -49.93 kcal Atomic # 14 Polarization: 55.54 SS G_CDS: 2.05 Total: 57.59 kcal Total: -79.46 2.57 -76.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356567581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.973 kcal (2) G-P(sol) polarization free energy of solvation -79.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds