Wall clock time and date at job start Wed Apr 1 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 114.00115 * 2 1 4 4 C 1.53001 * 109.47093 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.46255 * 65.02829 * 4 3 2 6 6 C 1.53046 * 109.46317 * 185.00219 * 4 3 2 7 7 C 1.53190 * 109.31364 * 181.38522 * 6 4 3 8 8 N 1.46924 * 108.77598 * 305.36573 * 7 6 4 9 9 C 1.34778 * 120.62845 * 233.58538 * 8 7 6 10 10 O 1.21276 * 119.99949 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99809 * 179.97438 * 9 8 7 12 12 C 1.53003 * 109.47101 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47107 * 305.00274 * 12 11 9 14 14 C 1.50699 * 109.47212 * 65.00094 * 12 11 9 15 15 H 1.08002 * 119.99614 * 34.15758 * 14 12 11 16 16 C 1.37873 * 120.00294 * 213.88411 * 14 12 11 17 17 N 1.31515 * 119.99951 * 354.61979 * 16 14 12 18 18 Si 1.86798 * 120.00085 * 174.61973 * 16 14 12 19 19 H 1.48498 * 109.47349 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47202 * 120.00105 * 18 16 14 21 21 H 1.48508 * 109.46960 * 239.99947 * 18 16 14 22 22 C 1.50704 * 109.47213 * 185.00513 * 12 11 9 23 23 C 1.38232 * 119.99555 * 297.97992 * 22 12 11 24 24 C 1.38239 * 119.99910 * 179.78982 * 23 22 12 25 25 C 1.38233 * 119.99585 * 0.44305 * 24 23 22 26 26 C 1.38230 * 120.00541 * 359.81023 * 25 24 23 27 27 C 1.38230 * 120.00021 * 118.25480 * 22 12 11 28 28 C 1.46920 * 118.74042 * 53.85939 * 8 7 6 29 29 C 1.53040 * 109.46022 * 305.06974 * 4 3 2 30 30 H 1.09001 * 109.46687 * 299.99677 * 1 2 3 31 31 H 1.08994 * 109.47295 * 59.99606 * 1 2 3 32 32 H 1.08995 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47022 * 60.00672 * 3 2 1 34 34 H 1.08999 * 109.47621 * 300.00030 * 3 2 1 35 35 H 0.96702 * 113.99786 * 299.97871 * 5 4 3 36 36 H 1.08997 * 109.49561 * 61.43466 * 6 4 3 37 37 H 1.08999 * 109.49620 * 301.33935 * 6 4 3 38 38 H 1.08999 * 109.58576 * 185.57422 * 7 6 4 39 39 H 1.09004 * 109.58717 * 65.15470 * 7 6 4 40 40 H 1.09006 * 109.47172 * 60.00695 * 11 9 8 41 41 H 1.09001 * 109.47723 * 300.00064 * 11 9 8 42 42 H 0.96997 * 120.00451 * 179.97438 * 17 16 14 43 43 H 1.07998 * 120.00647 * 0.02562 * 23 22 12 44 44 H 1.07998 * 120.00054 * 180.27755 * 24 23 22 45 45 H 1.08003 * 119.99666 * 179.83605 * 25 24 23 46 46 H 1.07995 * 120.00640 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.00158 * 359.97438 * 27 22 12 48 48 H 1.08998 * 109.58477 * 65.92890 * 28 8 7 49 49 H 1.08997 * 109.58805 * 186.35283 * 28 8 7 50 50 H 1.09001 * 109.49773 * 298.56334 * 29 4 3 51 51 H 1.09003 * 109.49666 * 58.66131 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9647 0.5801 -1.2224 6 6 4.1574 2.5772 0.1252 7 6 5.6840 2.4555 0.0894 8 7 6.1075 1.5092 1.1305 9 6 7.0330 1.8627 2.0443 10 8 7.5242 2.9710 2.0125 11 6 7.4565 0.8810 3.1064 12 6 8.5090 1.5283 4.0086 13 1 9.3359 1.8926 3.3989 14 6 7.8898 2.6813 4.7557 15 1 6.8562 2.6315 5.0649 16 6 8.6442 3.7973 5.0494 17 7 9.9298 3.8135 4.7724 18 14 7.8405 5.2864 5.8406 19 1 6.3949 5.0170 6.0478 20 1 8.4860 5.5603 7.1496 21 1 8.0014 6.4659 4.9528 22 6 9.0220 0.5092 4.9933 23 6 8.1578 -0.0656 5.9063 24 6 8.6274 -1.0036 6.8067 25 6 9.9630 -1.3600 6.7999 26 6 10.8282 -0.7814 5.8903 27 6 10.3577 0.1534 4.9870 28 6 5.5075 0.1683 1.1528 29 6 3.9787 0.3175 1.1800 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8462 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.6083 -0.3069 -1.3688 36 1 3.8505 3.0288 1.0685 37 1 3.8227 3.2013 -0.7034 38 1 6.1329 3.4308 0.2775 39 1 5.9986 2.0886 -0.8877 40 1 7.8785 -0.0060 2.6338 41 1 6.5908 0.5969 3.7047 42 1 10.4605 4.5987 4.9787 43 1 7.1151 0.2154 5.9139 44 1 7.9514 -1.4559 7.5171 45 1 10.3304 -2.0909 7.5050 46 1 11.8715 -1.0602 5.8847 47 1 11.0336 0.6054 4.2763 48 1 5.8079 -0.3813 0.2607 49 1 5.8398 -0.3660 2.0428 50 1 3.6735 0.7904 2.1135 51 1 3.5168 -0.6667 1.1022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356567582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:23 Heat of formation + Delta-G solvation = -129.641451 kcal Electronic energy + Delta-G solvation = -31597.178930 eV Core-core repulsion = 27460.417723 eV Total energy + Delta-G solvation = -4136.761206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.33252 -40.11907 -39.52451 -38.04878 -36.25518 -35.75201 -33.58034 -32.96873 -32.07356 -31.48634 -30.32636 -29.03754 -27.58164 -26.70860 -24.78967 -24.36035 -23.61972 -23.08465 -21.74650 -21.08217 -19.78325 -18.49752 -18.13120 -17.66437 -17.35665 -17.20425 -16.81163 -16.68406 -16.36373 -16.14280 -15.89692 -15.66529 -15.45294 -15.19524 -14.72899 -14.59842 -14.41182 -14.09155 -14.05951 -13.88042 -13.60625 -13.46504 -13.26414 -13.17249 -12.95573 -12.88806 -12.77434 -12.47430 -12.43046 -12.37441 -12.19947 -12.10724 -11.81324 -11.66929 -11.47046 -11.28748 -10.94232 -10.81535 -10.64640 -10.56839 -10.29824 -9.52763 -9.45353 -9.17702 -8.03243 -6.05551 0.79299 0.85659 1.34250 1.38263 1.45487 1.97104 2.20758 2.46346 2.71452 3.19875 3.25967 3.37054 3.67006 3.77791 3.88413 4.07026 4.11844 4.26182 4.33570 4.36898 4.37547 4.39080 4.41892 4.54076 4.56071 4.58670 4.60971 4.61845 4.70023 4.72428 4.76260 4.87474 4.88294 4.90042 4.93868 4.98317 5.02595 5.13051 5.25030 5.31665 5.39285 5.53744 5.64372 5.77751 5.80182 5.85128 5.97077 6.14276 6.19295 6.42705 6.47918 6.63086 6.88245 7.02236 7.55650 7.58161 9.06741 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.003173 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.115481 B = 8823.377514 C =10033.025308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.041 3.959 4 C 0.148 3.852 5 O -0.561 6.561 6 C -0.115 4.115 7 C 0.120 3.880 8 N -0.620 5.620 9 C 0.511 3.489 10 O -0.559 6.559 11 C -0.111 4.111 12 C 0.083 3.917 13 H 0.021 0.979 14 C -0.481 4.481 15 H 0.046 0.954 16 C 0.023 3.977 17 N -0.917 5.917 18 Si 0.935 3.065 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.293 1.293 22 C -0.046 4.046 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.147 4.147 26 C -0.128 4.128 27 C -0.143 4.143 28 C 0.111 3.889 29 C -0.148 4.148 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.391 0.609 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.253 0.747 43 H 0.116 0.884 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.131 0.869 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.067 0.933 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 -13.235 -8.064 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.036 4.036 4 C 0.107 3.893 5 O -0.369 6.369 6 C -0.153 4.153 7 C -0.003 4.003 8 N -0.356 5.356 9 C 0.300 3.700 10 O -0.435 6.435 11 C -0.151 4.151 12 C 0.064 3.936 13 H 0.039 0.961 14 C -0.519 4.519 15 H 0.064 0.936 16 C -0.176 4.176 17 N -0.557 5.557 18 Si 0.762 3.238 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.220 1.220 22 C -0.046 4.046 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.165 4.165 26 C -0.146 4.146 27 C -0.162 4.162 28 C -0.011 4.011 29 C -0.186 4.186 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.241 0.759 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.062 0.938 43 H 0.134 0.866 44 H 0.160 0.840 45 H 0.162 0.838 46 H 0.149 0.851 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.110 0.890 50 H 0.086 0.914 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.346 -12.125 -8.123 21.913 hybrid contribution -0.431 1.338 0.364 1.452 sum -16.777 -10.787 -7.759 21.402 Atomic orbital electron populations 1.22907 0.79488 1.03899 1.00599 1.87760 1.21330 1.27500 1.95566 1.23204 0.93503 0.85430 1.01507 1.21004 0.90500 0.92928 0.84912 1.86492 1.74687 1.36276 1.39413 1.21821 0.94625 0.95513 1.03360 1.21318 0.94548 0.93619 0.90823 1.48280 1.41558 1.15555 1.30195 1.21102 0.78435 0.88463 0.82002 1.90718 1.55517 1.23940 1.73329 1.21660 1.00932 0.96830 0.95641 1.17617 0.93831 0.90693 0.91438 0.96053 1.20983 0.95897 1.00471 1.34583 0.93559 1.25482 0.95132 1.00579 0.96390 1.70060 1.06592 1.29415 1.49667 0.85862 0.79282 0.80837 0.77778 1.18924 1.20781 1.21955 1.20560 0.93621 0.93069 0.97364 1.21026 0.99804 0.97512 0.96200 1.21370 0.96367 0.97800 0.98771 1.21260 0.93665 1.01736 0.99869 1.21279 1.00232 0.97117 0.96009 1.21092 0.95687 0.98776 1.00631 1.21893 0.92996 0.82657 1.03589 1.22530 0.95225 1.02276 0.98611 0.93656 0.93352 0.88233 0.92169 0.91881 0.75915 0.90648 0.88855 0.91988 0.90907 0.89531 0.88744 0.93838 0.86606 0.84025 0.83839 0.85138 0.89064 0.90127 0.88970 0.91414 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.08 9.46 -144.35 -1.37 -7.45 16 3 C 0.04 0.63 5.09 71.98 0.37 1.00 16 4 C 0.15 2.76 0.80 -10.76 -0.01 2.75 16 5 O -0.56 -10.41 11.70 -144.35 -1.69 -12.10 16 6 C -0.11 -2.62 5.11 30.67 0.16 -2.46 16 7 C 0.12 3.59 6.19 86.36 0.53 4.13 16 8 N -0.62 -20.03 2.97 -818.09 -2.43 -22.45 16 9 C 0.51 21.78 7.45 87.66 0.65 22.43 16 10 O -0.56 -30.23 14.40 -3.02 -0.04 -30.27 16 11 C -0.11 -4.44 3.28 29.85 0.10 -4.34 16 12 C 0.08 4.20 1.67 -12.28 -0.02 4.18 16 13 H 0.02 1.27 6.97 -2.39 -0.02 1.26 16 14 C -0.48 -26.95 6.43 25.60 0.16 -26.79 16 15 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 16 C 0.02 1.34 5.45 84.65 0.46 1.80 16 17 N -0.92 -57.42 12.86 21.45 0.28 -57.15 16 18 Si 0.93 47.46 29.54 68.60 2.03 49.49 16 19 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 21 H -0.29 -15.12 7.11 99.48 0.71 -14.42 16 22 C -0.05 -2.07 4.77 -19.87 -0.09 -2.16 16 23 C -0.13 -4.98 8.86 22.27 0.20 -4.78 16 24 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 25 C -0.15 -4.61 10.05 22.27 0.22 -4.38 16 26 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 27 C -0.14 -6.30 9.67 22.27 0.22 -6.09 16 28 C 0.11 2.58 6.13 86.51 0.53 3.11 16 29 C -0.15 -2.83 4.92 30.82 0.15 -2.68 16 30 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.39 5.07 8.73 -74.06 -0.65 4.43 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 2.24 7.01 -2.39 -0.02 2.22 16 39 H 0.07 2.09 7.81 -2.39 -0.02 2.07 16 40 H 0.09 3.03 7.93 -2.38 -0.02 3.01 16 41 H 0.09 3.39 7.25 -2.39 -0.02 3.37 16 42 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.12 4.33 7.71 -2.91 -0.02 4.31 16 44 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 45 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 46 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 47 H 0.09 4.29 7.95 -2.91 -0.02 4.27 16 48 H 0.08 1.70 7.81 -2.39 -0.02 1.68 16 49 H 0.09 2.05 5.93 -2.39 -0.01 2.04 16 50 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.10 1.61 7.51 -2.39 -0.02 1.60 16 Total: -1.00 -76.57 407.25 2.37 -74.20 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.27 Total: 26.68 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 5.32 Total: -20.96 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -2.15 Total: -79.60 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -3.10 Total: -49.81 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -76.57 2.37 -74.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356567582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.443 kcal (2) G-P(sol) polarization free energy of solvation -76.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds